Summary: Transcription factor Tfb4
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Transcription factor Tfb4 Provide feedback
This family appears to be distantly related to the VWA domain.
Internal database links
|Similarity to PfamA using HHSearch:||VWA_2|
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR004600Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits [PUBMED:14534314]. This is the p34 subunit.
The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.
|Cellular component||core TFIIH complex (GO:0000439)|
|Biological process||DNA repair (GO:0006281)|
|regulation of transcription, DNA-dependent (GO:0006355)|
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This example describes an architecture with one
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We make a range of alignments for each Pfam-A family:
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Curation and family details
|Author:||TIGRFAMs, Griffiths-Jones SR, Bateman A|
|Number in seed:||26|
|Number in full:||353|
|Average length of the domain:||246.40 aa|
|Average identity of full alignment:||33 %|
|Average coverage of the sequence by the domain:||81.47 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||9|
|Download:||download the raw HMM for this family|
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