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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
A-2_8-polyST PF07388 Family 3 14 245.60 16 76.25 Changed Alpha-2,8-polysialyltransferase (POLYST)
A1_Propeptide PF07966 Motif 133 939 27.90 38 7.32 Changed A1 Propeptide
A2L_zn_ribbon PF08792 Domain 12 81 31.60 31 13.49 Changed A2L zinc ribbon domain
A2M PF00207 Family 78 5499 89.80 23 5.59 Changed Alpha-2-macroglobulin family
A2M_BRD PF07703 Domain 632 4765 145.20 18 9.23 Changed Alpha-2-macroglobulin bait region domain
A2M_recep PF07677 Domain 269 2376 87.90 29 6.66 Changed A-macroglobulin receptor binding domain
AAA PF00004 Domain 207 131444 130.30 25 21.50 Changed ATPase family associated with various cellular activities (AAA)
AAA-ATPase_like PF09820 Family 59 3082 245.30 26 53.86 Changed Predicted AAA-ATPase
AAA_10 PF12846 Domain 11 2126 302.90 19 41.84 Changed AAA-like domain
AAA_11 PF13086 Domain 45 18966 184.70 17 19.69 Changed AAA domain
AAA_12 PF13087 Domain 107 16968 192.80 25 16.21 Changed AAA domain
AAA_13 PF13166 Domain 16 965 469.00 14 73.39 Changed AAA domain
AAA_14 PF13173 Family 220 7548 126.40 24 31.17 Changed AAA domain
AAA_15 PF13175 Domain 38 5862 241.20 12 51.59 Changed AAA ATPase domain
AAA_16 PF13191 Domain 125 16753 172.20 18 16.95 Changed AAA ATPase domain
AAA_17 PF13207 Domain 305 1346 129.80 20 44.93 Changed AAA domain
AAA_18 PF13238 Domain 58 4289 131.80 18 60.94 Changed AAA domain
AAA_19 PF13245 Domain 38 9191 261.80 18 34.16 Changed AAA domain
AAA_2 PF07724 Domain 138 35039 173.10 37 25.93 Changed AAA domain (Cdc48 subfamily)
AAA_21 PF13304 Domain 79 9658 207.20 15 50.19 Changed AAA domain, putative AbiEii toxin, Type IV TA system
AAA_22 PF13401 Domain 70 8371 134.80 18 26.06 Changed AAA domain
AAA_23 PF13476 Domain 204 10250 262.40 14 33.62 Changed AAA domain
AAA_24 PF13479 Domain 62 1142 204.30 16 68.97 Changed AAA domain
AAA_25 PF13481 Domain 46 9965 167.20 30 35.39 Changed AAA domain
AAA_26 PF13500 Domain 41 8418 206.50 21 49.85 Changed AAA domain
AAA_27 PF13514 Domain 53 1325 185.10 24 19.31 Changed AAA domain
AAA_28 PF13521 Domain 71 3453 164.90 20 61.29 Changed AAA domain
AAA_29 PF13555 Domain 48 1163 59.30 35 5.53 Changed P-loop containing region of AAA domain
AAA_3 PF07726 Domain 51 12257 130.60 57 39.24 Changed ATPase family associated with various cellular activities (AAA)
AAA_30 PF13604 Domain 119 10134 194.50 22 23.53 Changed AAA domain
AAA_31 PF13614 Domain 57 27985 172.10 26 46.98 Changed AAA domain
AAA_32 PF13654 Domain 208 2005 401.00 25 56.56 Changed AAA domain
AAA_33 PF13671 Domain 69 10655 134.70 18 32.18 Changed AAA domain
AAA_34 PF13872 Domain 77 1728 283.20 47 23.08 Changed P-loop containing NTP hydrolase pore-1
AAA_35 PF14516 Family 60 1794 316.40 24 47.07 Changed AAA-like domain
AAA_5 PF07728 Domain 33 22493 131.60 19 24.41 Changed AAA domain (dynein-related subfamily)
AAA_6 PF12774 Domain 117 6628 284.10 45 8.48 Changed Hydrolytic ATP binding site of dynein motor region
AAA_7 PF12775 Domain 431 5921 169.80 30 4.59 Changed P-loop containing dynein motor region
AAA_8 PF12780 Domain 32 6023 240.90 34 6.76 Changed P-loop containing dynein motor region D4
AAA_9 PF12781 Domain 508 5964 205.00 37 5.84 Changed ATP-binding dynein motor region
AAA_assoc PF14363 Family 168 1926 95.80 24 20.11 Changed Domain associated at C-terminal with AAA
AAA_assoc_2 PF16193 Family 800 8258 80.30 36 17.85 Changed AAA C-terminal domain
AAA_assoc_C PF09821 Domain 105 664 118.20 37 28.55 Changed C-terminal AAA-associated domain
AAA_lid_1 PF17857 Domain 3 4094 97.30 33 2.56 New AAA+ lid domain
AAA_lid_10 PF17872 Domain 8 1445 64.10 40 8.91 New AAA lid domain
AAA_lid_11 PF18198 Domain 478 5668 163.90 32 4.56 New Dynein heavy chain AAA lid domain
AAA_lid_2 PF17863 Domain 223 14861 72.80 31 19.94 New AAA lid domain
AAA_lid_3 PF17862 Domain 747 43200 48.30 31 8.23 New AAA+ lid domain
AAA_lid_4 PF17864 Domain 90 7662 73.90 52 21.56 New RuvB AAA lid domain
AAA_lid_5 PF17865 Domain 40 1123 103.50 36 2.33 New Midasin AAA lid domain
AAA_lid_6 PF17866 Domain 210 3824 63.50 25 10.05 New AAA lid domain
AAA_lid_7 PF17867 Domain 148 3048 104.70 22 6.10 New Midasin AAA lid domain
AAA_lid_8 PF17868 Domain 38 734 73.90 31 15.87 New AAA lid domain
AAA_lid_9 PF17871 Domain 286 20380 106.00 41 12.82 New AAA lid domain
AAA_PrkA PF08298 Domain 7 2155 342.60 43 53.95 Changed PrkA AAA domain
AadA_C PF18280 Domain 2 21 103.00 76 24.00 New Aminoglycoside adenyltransferase C-terminal domain
AalphaY_MDB PF04611 Family 1 1 145.00 100 15.61 Changed Mating type protein A alpha Y mating type dependent binding region
AAL_decarboxy PF03306 Domain 164 1149 205.70 31 86.79 Changed Alpha-acetolactate decarboxylase
AAR2 PF05282 Family 106 1088 321.20 23 80.57 Changed AAR2 protein
AARP2CN PF08142 Domain 204 2317 83.30 34 8.61 Changed AARP2CN (NUC121) domain
AAT PF03417 Domain 17 2550 220.40 18 57.11 Changed Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
AATase PF07247 Family 7 1023 343.30 15 73.19 Changed Alcohol acetyltransferase
AATF-Che1 PF13339 Family 193 1094 137.30 25 27.04 Changed Apoptosis antagonizing transcription factor
AA_kinase PF00696 Family 128 40616 236.00 19 62.46 Changed Amino acid kinase family
AA_permease PF00324 Family 25 24669 401.90 22 75.14 Changed Amino acid permease
AA_permease_2 PF13520 Family 50 44050 414.80 17 82.69 Changed Amino acid permease
AA_permease_C PF13906 Domain 45 2966 49.80 40 8.28 Changed C-terminus of AA_permease
AA_permease_N PF08403 Family 12 507 65.40 41 6.61 Changed Amino acid permease N-terminal
AA_synth PF06684 Family 57 1017 174.80 44 89.90 Changed Amino acid synthesis
Aa_trans PF01490 Family 23 22416 341.30 16 77.02 Changed Transmembrane amino acid transporter protein
ABATE PF07336 Family 259 3507 127.90 19 65.87 Changed Putative stress-induced transcription regulator
ABA_GPCR PF12430 Family 74 1058 171.50 33 33.83 Changed Abscisic acid G-protein coupled receptor
ABA_WDS PF02496 Family 20 344 74.20 59 43.54 Changed ABA/WDS induced protein
AbbA_antirepres PF14156 Family 5 48 60.70 44 96.62 Changed Antirepressor AbbA
ABC-3 PF00950 Family 14 10685 250.80 27 88.79 Changed ABC 3 transport family
ABC1 PF03109 Family 29 15304 115.20 29 20.73 Changed ABC1 family
ABC2_membrane PF01061 Family 229 50475 206.10 15 42.62 Changed ABC-2 type transporter
ABC2_membrane_2 PF12679 Domain 21 10299 268.10 12 83.28 Changed ABC-2 family transporter protein
ABC2_membrane_3 PF12698 Family 138 25664 334.90 11 55.89 Changed ABC-2 family transporter protein
ABC2_membrane_4 PF12730 Family 48 4203 181.70 14 64.60 Changed ABC-2 family transporter protein
ABC2_membrane_5 PF13346 Family 58 1438 201.80 15 84.53 Changed ABC-2 family transporter protein
ABC2_membrane_6 PF06182 Family 12 3904 228.20 19 87.06 Changed ABC-2 family transporter protein
ABC_ATPase PF09818 Family 31 847 409.20 43 76.28 Changed Predicted ATPase of the ABC class
ABC_cobalt PF09819 Family 124 1202 121.10 33 60.46 Changed ABC-type cobalt transport system, permease component
ABC_export PF16962 Family 32 168 499.30 18 96.05 Changed Putative ABC exporter
ABC_membrane PF00664 Family 70 111317 263.40 14 40.83 Changed ABC transporter transmembrane region
ABC_membrane_2 PF06472 Family 26 4727 256.50 24 40.61 Changed ABC transporter transmembrane region 2
ABC_membrane_3 PF13748 Family 9 123 225.10 33 80.85 Changed ABC transporter transmembrane region
ABC_sub_bind PF04392 Family 7 4149 275.50 25 76.38 Changed ABC transporter substrate binding protein
ABC_tran PF00005 Domain 55 681506 148.80 26 38.88 Changed ABC transporter
ABC_transp_aux PF09822 Family 148 2432 244.50 20 43.58 Changed ABC-type uncharacterized transport system
ABC_trans_aux PF03886 Family 66 2922 159.20 18 75.75 Changed ABC-type transport auxiliary lipoprotein component
ABC_trans_CmpB PF06541 Family 579 2124 149.40 25 62.45 Changed Putative ABC-transporter type IV
ABC_trans_N PF14510 Domain 396 5060 104.50 18 7.47 Changed ABC-transporter N-terminal
ABC_tran_2 PF16949 Family 5 374 476.80 16 88.04 Changed Putative ATP-binding cassette
ABC_tran_CTD PF16326 Domain 840 7668 69.40 25 11.19 Changed ABC transporter C-terminal domain
ABC_tran_Xtn PF12848 Domain 157 25148 85.70 22 14.44 Changed ABC transporter
Abdominal-A PF12407 Family 3 87 24.00 87 7.11 Changed Homeobox protein
AbfB PF05270 Domain 100 1547 126.60 29 16.36 Changed Alpha-L-arabinofuranosidase B (ABFB) domain
AbfS_sensor PF18225 Domain 6 29 60.90 27 13.19 New Sensor histidine kinase (AbfS) sensor domain
ABG_transport PF03806 Family 9 1820 452.90 38 96.05 Changed AbgT putative transporter family
Abhydrolase_1 PF00561 Domain 48 80360 214.80 16 60.70 Changed alpha/beta hydrolase fold
Abhydrolase_2 PF02230 Domain 10 9054 191.00 20 77.20 Changed Phospholipase/Carboxylesterase
Abhydrolase_3 PF07859 Domain 100 37233 189.70 21 54.74 Changed alpha/beta hydrolase fold
Abhydrolase_4 PF08386 Family 33 4324 100.20 22 19.72 Changed TAP-like protein
Abhydrolase_5 PF12695 Domain 6 831 155.90 31 60.11 Changed Alpha/beta hydrolase family
Abhydrolase_6 PF12697 Domain 445 61087 239.70 13 76.48 Changed Alpha/beta hydrolase family
Abhydrolase_7 PF12715 Domain 9 341 301.40 22 77.89 Changed Abhydrolase family
Abhydrolase_8 PF06259 Family 5 1626 170.90 30 34.13 Changed Alpha/beta hydrolase
Abhydrolase_9 PF10081 Family 79 897 260.00 41 50.76 Changed Alpha/beta-hydrolase family
Abhydrolase_9_N PF15420 Family 103 797 205.60 30 36.83 Changed Alpha/beta-hydrolase family N-terminus
Abhydro_lipase PF04083 Family 65 3061 64.60 35 13.56 Changed Partial alpha/beta-hydrolase lipase region
AbiEii PF08843 Domain 170 6011 210.90 14 82.38 Changed Nucleotidyl transferase AbiEii toxin, Type IV TA system
AbiEi_1 PF09407 Domain 9 511 135.70 18 54.21 Changed AbiEi antitoxin C-terminal domain
AbiEi_2 PF09952 Family 8 353 143.90 23 43.82 Changed Transcriptional regulator, AbiEi antitoxin, Type IV TA system
AbiEi_3 PF11459 Family 24 457 153.10 33 60.37 Changed Transcriptional regulator, AbiEi antitoxin, Type IV TA system
AbiEi_3_N PF17194 Domain 24 471 91.10 33 35.70 Changed Transcriptional regulator, AbiEi antitoxin N-terminal domain
AbiEi_4 PF13338 Domain 108 1551 47.70 24 19.95 Changed Transcriptional regulator, AbiEi antitoxin
AbiGi PF10899 Family 5 108 174.20 18 68.40 Changed Putative abortive phage resistance protein AbiGi, antitoxin
AbiGii_2 PF16873 Domain 4 11 379.40 22 95.65 Changed Putative abortive phage resistance protein AbiGii toxin
AbiH PF14253 Family 36 424 262.50 18 82.70 Changed Bacteriophage abortive infection AbiH
AbiJ_NTD3 PF18860 Domain 94 145 161.50 26 39.32 New AbiJ N-terminal domain 3
AbiJ_NTD4 PF18863 Domain 97 211 156.90 17 55.49 New AbiJ N-terminal domain 4
AbiJ_NTD5 PF18865 Domain 24 47 90.80 29 35.31 New AbiJ N-terminal domain 5
AbiTii PF18864 Domain 91 247 183.40 19 66.67 New AbiTii
Abi_2 PF07751 Family 196 1624 179.30 21 62.31 Changed Abi-like protein
Abi_C PF14355 Family 63 490 78.50 24 29.17 Changed Abortive infection C-terminus
Abi_HHR PF07815 Family 24 911 76.90 58 17.15 Changed Abl-interactor HHR
AbLIM_anchor PF16182 Family 49 1571 214.50 30 58.30 Changed Putative adherens-junction anchoring region of AbLIM
ABM PF03992 Domain 94 17242 76.60 16 59.45 Changed Antibiotic biosynthesis monooxygenase
Abp2 PF09441 Family 34 269 163.20 56 22.55 Changed ARS binding protein 2
AbrB PF05145 Family 145 2349 287.30 23 89.36 Changed Transition state regulatory protein AbrB
AbrB-like PF14250 Family 40 396 68.60 57 50.99 Changed AbrB-like transcriptional regulator
AbrB_C PF18277 Domain 14 383 36.90 55 39.40 New AbrB C-terminal domain
Ac110_PIF PF07280 Family 23 52 43.10 36 75.78 Changed Per os infectivity factor AC110
Ac76 PF05814 Family 15 62 80.40 44 94.50 Changed Orf76 (Ac76)
Ac81 PF05820 Family 6 72 173.30 43 78.41 Changed Baculoviridae AC81
ACAS_N PF16177 Family 794 12497 56.70 31 8.76 Changed Acetyl-coenzyme A synthetase N-terminus
Acatn PF13000 Family 16 3127 181.00 16 69.57 Changed Acetyl-coenzyme A transporter 1
ACBP PF00887 Domain 518 5211 82.40 32 31.01 Changed Acyl CoA binding protein
ACCA PF03255 Family 338 5367 136.80 48 40.24 Changed Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
ACC_central PF08326 Family 120 2125 541.50 25 29.65 Changed Acetyl-CoA carboxylase, central region
ACC_epsilon PF13822 Family 112 1422 59.40 32 77.56 Changed Acyl-CoA carboxylase epsilon subunit
ACD PF16671 Domain 3 8 377.00 43 15.16 Changed Actin cross-linking domain
ACDC PF14733 Family 31 404 92.50 23 6.43 Changed AP2-coincident C-terminal
AceK PF06315 Family 64 819 546.80 45 95.45 Changed Isocitrate dehydrogenase kinase/phosphatase (AceK)
Acetate_kinase PF00871 Family 9 8070 367.00 35 95.04 Changed Acetokinase family
AcetDehyd-dimer PF09290 Domain 106 1456 145.30 60 47.93 Changed Prokaryotic acetaldehyde dehydrogenase, dimerisation
Acetone_carb_G PF08882 Domain 32 253 108.60 38 51.53 Changed Acetone carboxylase gamma subunit
AcetylCoA_hydro PF02550 Domain 5 4119 191.60 24 40.04 Changed Acetyl-CoA hydrolase/transferase N-terminal domain
AcetylCoA_hyd_C PF13336 Domain 181 4812 150.00 39 31.00 Changed Acetyl-CoA hydrolase/transferase C-terminal domain
Acetyltransf_1 PF00583 Family 223 120379 121.00 15 52.87 Changed Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 Domain 63 26461 119.40 16 62.68 Changed Acetyltransferase (GNAT) domain
Acetyltransf_11 PF13720 Domain 547 4481 82.20 33 31.10 Changed Udp N-acetylglucosamine O-acyltransferase; Domain 2
Acetyltransf_13 PF13880 Domain 106 1045 67.80 40 13.54 Changed ESCO1/2 acetyl-transferase
Acetyltransf_14 PF03421 Family 10 70 167.40 21 48.79 Changed YopJ Serine/Threonine acetyltransferase
Acetyltransf_15 PF17013 Family 10 21 215.70 24 87.59 Changed Putative acetyl-transferase
Acetyltransf_16 PF05301 Family 36 567 152.20 38 49.91 Changed GNAT acetyltransferase, Mec-17
Acetyltransf_17 PF17668 Domain 252 2285 117.10 22 28.88 New Acetyltransferase (GNAT) domain
Acetyltransf_18 PF18014 Domain 32 1986 120.30 24 40.93 New Acetyltransferase (GNAT) domain
Acetyltransf_19 PF18015 Domain 16 75 113.50 24 44.60 New Acetyltransferase (GNAT) domain
Acetyltransf_2 PF00797 Family 26 2948 236.10 25 81.54 Changed N-acetyltransferase
Acetyltransf_3 PF13302 Domain 170 43042 140.40 19 65.78 Changed Acetyltransferase (GNAT) domain
Acetyltransf_4 PF13420 Domain 10 5332 152.40 28 84.25 Changed Acetyltransferase (GNAT) domain
Acetyltransf_5 PF13444 Domain 153 3836 103.00 29 29.70 Changed Acetyltransferase (GNAT) domain
Acetyltransf_6 PF13480 Domain 141 6027 142.10 14 39.05 Changed Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 Domain 2199 9516 90.20 18 47.59 Changed Acetyltransferase (GNAT) domain
Acetyltransf_8 PF13523 Domain 195 3128 143.20 25 43.78 Changed Acetyltransferase (GNAT) domain
Acetyltransf_9 PF13527 Domain 72 6051 125.10 18 39.83 Changed Acetyltransferase (GNAT) domain
Acetyltransf_CG PF14542 Domain 213 5190 78.70 28 72.43 Changed GCN5-related N-acetyl-transferase
AChE_tetra PF08674 Domain 9 174 36.80 68 7.37 Changed Acetylcholinesterase tetramerisation domain
ACI44 PF15270 Family 3 2 40.00 0 54.05 Changed Metallo-carboxypeptidase inhibitor
Acid_phosphat_B PF03767 Family 31 2535 197.30 23 80.93 Changed HAD superfamily, subfamily IIIB (Acid phosphatase)
Acid_PPase PF12689 Family 32 1079 147.50 35 73.06 Changed Acid Phosphatase
AcMNPV_Ac109 PF05054 Family 2 83 257.50 35 97.33 Changed Autographa californica nuclear polyhedrosis virus (AcMNPV) protein
Aconitase PF00330 Family 688 22427 430.60 31 65.22 Changed Aconitase family (aconitate hydratase)
Aconitase_2_N PF06434 Family 51 1937 213.00 54 24.82 Changed Aconitate hydratase 2 N-terminus
Aconitase_B_N PF11791 Domain 173 1929 152.70 51 17.82 Changed Aconitate B N-terminal domain
Aconitase_C PF00694 Domain 12 19224 119.90 31 21.34 Changed Aconitase C-terminal domain
ACOX PF01756 Family 269 3730 161.50 23 24.73 Changed Acyl-CoA oxidase
ACP PF06857 Family 142 1095 82.00 32 76.29 Changed Malonate decarboxylase delta subunit (MdcD)
Acp26Ab PF05777 Family 2 8 88.60 50 75.59 Changed Drosophila accessory gland-specific peptide 26Ab (Acp26Ab)
ACP53EA PF06313 Family 13 43 89.70 26 72.53 Changed Drosophila ACP53EA protein
ACPS PF01648 Domain 151 13419 110.60 19 35.34 Changed 4'-phosphopantetheinyl transferase superfamily
ACP_PD PF04336 Family 146 1171 104.80 28 53.51 Changed Acyl carrier protein phosphodiesterase
ACP_syn_III PF08545 Domain 136 13023 80.20 34 23.38 Changed 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
ACP_syn_III_C PF08541 Domain 152 15846 89.40 30 24.85 Changed 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AcrZ PF10766 Family 9 135 47.00 64 88.60 Changed Multidrug efflux pump-associated protein AcrZ
ACR_tran PF00873 Family 15 39964 878.10 24 95.88 Changed AcrB/AcrD/AcrF family
ACT PF01842 Domain 131 27769 65.00 18 17.24 Changed ACT domain
Act-Frag_cataly PF09192 Domain 7 257 277.10 45 34.89 Changed Actin-fragmin kinase, catalytic
ActA PF05058 Family 1 1 633.00 100 99.06 Changed ActA Protein
ACTH_assoc PF16102 Family 26 1 29.00 100 10.94 Changed ACTH-associated domain
ACTH_domain PF00976 Family 23 303 19.00 58 19.34 Changed Corticotropin ACTH domain
Actin PF00022 Family 25 20085 299.10 26 81.74 Changed Actin
Actino_peptide PF14408 Family 17 122 61.60 34 64.26 Changed Ribosomally synthesised peptide in actinomycetes
Actin_micro PF17003 Family 7 36 242.20 17 60.74 Changed Putative actin-like family
Activator-TraM PF11657 Family 5 76 134.60 32 95.46 Changed Transcriptional activator TraM
Activator_LAG-3 PF11498 Family 2 55 231.10 17 33.40 Changed Transcriptional activator LAG-3
Activin_recp PF01064 Domain 18 1768 83.90 25 15.04 Changed Activin types I and II receptor domain
ACTL7A_N PF16840 Domain 15 41 64.90 64 14.85 Changed Actin-like protein 7A N-terminus
ACT_3 PF10000 Domain 76 841 68.70 33 46.22 Changed ACT domain
ACT_4 PF13291 Domain 116 9193 78.60 23 11.25 Changed ACT domain
ACT_5 PF13710 Domain 44 4923 62.90 44 37.15 Changed ACT domain
ACT_6 PF13740 Domain 45 4874 75.60 22 32.41 Changed ACT domain
ACT_7 PF13840 Domain 139 10389 64.90 31 16.36 Changed ACT domain
acVLRF1 PF18859 Family 135 384 128.80 34 49.64 New Actinobacteria/chloroflexi VLRF1 release factor
Acyl-ACP_TE PF01643 Family 9 2925 209.70 20 84.75 Changed Acyl-ACP thioesterase
Acyl-CoA_dh_1 PF00441 Domain 49 78566 150.90 24 34.38 Changed Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2 PF08028 Domain 21 6727 133.20 22 33.64 Changed Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_C PF12806 Domain 499 5773 126.10 25 21.31 Changed Acetyl-CoA dehydrogenase C-terminal like
Acyl-CoA_dh_M PF02770 Domain 43 73321 98.60 29 21.67 Changed Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_N PF02771 Domain 790 75441 113.00 21 26.36 Changed Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_ox_N PF14749 Domain 132 2036 113.20 24 17.43 Changed Acyl-coenzyme A oxidase N-terminal
Acyl-thio_N PF12590 Family 17 236 121.40 58 30.91 Changed Acyl-ATP thioesterase
AcylCoA_dehyd_C PF12186 Domain 50 243 109.50 35 20.19 Changed Acyl-CoA dehydrogenase C terminal
AcylCoA_DH_N PF12418 Family 258 4757 31.30 32 5.26 Changed Acyl-CoA dehydrogenase N terminal
Acylphosphatase PF00708 Domain 52 7777 84.00 31 30.73 Changed Acylphosphatase
Acyltransferase PF01553 Family 46 39498 135.50 20 36.41 Changed Acyltransferase
Acyltransf_C PF16076 Family 80 2435 74.20 24 18.81 Changed Acyltransferase C-terminus
Acyl_CoA_thio PF02551 Domain 9 103 112.30 29 54.34 Changed Acyl-CoA thioesterase
Acyl_transf_1 PF00698 Domain 8 28877 297.40 26 20.26 Changed Acyl transferase domain
Acyl_transf_2 PF02273 Domain 4 30 255.30 28 49.43 Changed Acyl transferase
Acyl_transf_3 PF01757 Family 100 26036 333.40 14 74.17 Changed Acyltransferase family
AC_N PF16214 Family 3 1744 229.60 29 21.94 Changed Adenylyl cyclase N-terminal extracellular and transmembrane region
AD PF09793 Domain 107 800 86.50 31 39.15 Changed Anticodon-binding domain
Ada3 PF10198 Family 85 916 131.00 27 20.36 Changed Histone acetyltransferases subunit 3
ADAM17_MPD PF16698 Domain 28 332 60.60 48 8.40 Changed Membrane-proximal domain, switch, for ADAM17
ADAM_CR PF08516 Family 377 2970 113.40 32 14.52 Changed ADAM cysteine-rich
ADAM_CR_2 PF17771 Domain 91 3328 68.40 37 6.57 New ADAM cysteine-rich domain
ADAM_spacer1 PF05986 Family 21 3407 113.50 31 9.99 Changed ADAM-TS Spacer 1
Adaptin_binding PF10199 Family 29 769 145.50 21 39.64 Changed Alpha and gamma adaptin binding protein p34
Adaptin_N PF01602 Family 30 11872 477.00 20 58.43 Changed Adaptin N terminal region
Adap_comp_sub PF00928 Family 46 6598 262.30 25 52.88 Changed Adaptor complexes medium subunit family
Ada_Zn_binding PF02805 Family 301 4057 63.70 43 17.59 Changed Metal binding domain of Ada
ADC PF06314 Family 72 2101 222.60 17 68.96 Changed Acetoacetate decarboxylase (ADC)
ADD_ATRX PF17981 Domain 10 329 54.50 46 3.29 New Cysteine Rich ADD domain
ADD_DNMT3 PF17980 Domain 24 443 55.30 53 6.80 New Cysteine rich ADD domain in DNMT3
Adenine_deam_C PF13382 Family 304 2867 166.00 34 29.17 Changed Adenine deaminase C-terminal domain
Adenine_glyco PF03352 Family 567 6315 165.60 39 78.30 Changed Methyladenine glycosylase
Adenosine_kin PF04008 Family 98 461 152.00 57 94.70 Changed Adenosine specific kinase
Adeno_100 PF02438 Family 3 89 579.20 51 73.83 Changed Late 100kD protein
Adeno_52K PF03052 Family 17 102 192.30 43 54.81 Changed Adenoviral protein L1 52/55-kDa
Adeno_E1A PF02703 Family 1 93 129.60 22 85.10 Changed Early E1A protein
Adeno_E1B_19K PF01691 Family 16 61 135.40 37 75.53 Changed Adenovirus E1B 19K protein / small t-antigen
Adeno_E1B_55K PF01696 Family 15 85 320.80 30 71.46 Changed Adenovirus EB1 55K protein / large t-antigen
Adeno_E1B_55K_N PF04623 Family 5 38 69.20 36 15.76 Changed Adenovirus E1B protein N-terminus
Adeno_E3 PF06040 Family 4 16 126.20 50 77.83 Changed Adenovirus E3 protein
Adeno_E3A PF05248 Family 1 36 104.70 54 97.62 Changed Adenovirus E3A
Adeno_E3B PF03376 Family 1 33 67.00 52 73.43 Changed Adenovirus E3B protein
Adeno_E3_14_5 PF04834 Family 1 30 100.40 38 80.39 Changed Early E3 14.5 kDa protein
Adeno_E3_15_3 PF03307 Family 1 40 116.60 52 89.61 Changed Adenovirus 15.3kD protein in E3 region
Adeno_E3_CR1 PF02440 Domain 20 38 93.60 29 47.39 Changed Adenovirus E3 region protein CR1
Adeno_E3_CR2 PF02439 Family 9 34 37.40 36 10.44 Changed Adenovirus E3 region protein CR2
Adeno_E4 PF05385 Family 1 34 107.20 46 88.09 Changed Mastadenovirus early E4 13 kDa protein
Adeno_E4_34 PF04528 Family 1 57 144.90 41 52.30 Changed Adenovirus early E4 34 kDa protein conserved region
Adeno_E4_ORF3 PF06931 Family 1 36 112.90 63 95.96 Changed Mastadenovirus E4 ORF3 protein
Adeno_GP19K PF04881 Family 2 22 128.10 43 73.80 Changed Adenovirus GP19K
Adeno_hexon PF01065 Domain 3 96 475.20 53 54.27 Changed Hexon, adenovirus major coat protein, N-terminal domain
Adeno_hexon_C PF03678 Domain 3 90 227.10 68 24.40 Changed Hexon, adenovirus major coat protein, C-terminal domain
Adeno_IVa2 PF02456 Domain 3 97 328.50 49 79.86 Changed Adenovirus IVa2 protein
Adeno_knob PF00541 Domain 1 56 171.40 33 37.20 Changed Adenoviral fibre protein (knob domain)
Adeno_Penton_B PF01686 Family 4 91 472.10 62 93.59 Changed Adenovirus penton base protein
Adeno_PIX PF03955 Family 1 62 96.90 47 69.53 Changed Adenovirus hexon-associated protein (IX)
Adeno_PV PF03910 Family 1 78 246.60 40 88.64 Changed Adenovirus minor core protein PV
Adeno_PVIII PF01310 Family 3 94 204.20 43 96.25 Changed Adenovirus hexon associated protein, protein VIII
Adeno_PX PF05829 Family 3 77 42.00 62 44.03 Changed Adenovirus late L2 mu core protein (Protein X)
Adeno_shaft PF00608 Repeat 8 540 31.30 23 43.30 Changed Adenoviral fibre protein (repeat/shaft region)
Adeno_terminal PF02459 Family 4 92 530.10 47 87.49 Changed Adenoviral DNA terminal protein
Adeno_VII PF03228 Family 2 77 118.30 43 76.45 Changed Adenoviral core protein VII
AdenylateSensor PF16579 Domain 14 1084 90.10 33 14.91 Changed Adenylate sensor of SNF1-like protein kinase
Adenylate_cycl PF01295 Family 30 548 530.70 37 63.98 Changed Adenylate cyclase, class-I
Adenylsucc_synt PF00709 Domain 755 9983 384.60 42 95.69 Changed Adenylosuccinate synthetase
Adenyl_cycl_N PF12633 Domain 58 527 192.40 42 22.49 Changed Adenylate cyclase NT domain
Adenyl_transf PF04439 Family 55 766 250.90 26 94.50 Changed Streptomycin adenylyltransferase
AdHead_fibreRBD PF16812 Domain 2 17 196.40 27 36.18 Changed C-terminal head domain of the fowl adenovirus type 1 long fibre
Adhes-Ig_like PF09085 Domain 10 76 109.40 67 30.41 Changed Adhesion molecule, immunoglobulin-like
Adhesin_Dr PF04619 Family 6 0 0.00 0 0.00 Changed Dr-family adhesin
Adhesin_E PF16747 Domain 6 41 117.30 26 77.46 Changed Surface-adhesin protein E
Adhesin_P1 PF03257 Family 6 10 91.00 63 14.03 Changed Mycoplasma adhesin P1
Adhesin_P1_N PF18652 Domain 15 45 65.80 35 5.62 New Adhesin P1 N-terminal domain
ADH_N PF08240 Domain 68 96469 100.50 25 24.15 Changed Alcohol dehydrogenase GroES-like domain
ADH_N_2 PF16884 Family 67 6842 107.60 31 31.60 Changed N-terminal domain of oxidoreductase
ADH_N_assoc PF13823 Domain 88 3376 22.80 49 5.95 Changed Alcohol dehydrogenase GroES-associated
adh_short PF00106 Domain 44 152101 182.60 23 62.26 Changed short chain dehydrogenase
adh_short_C2 PF13561 Domain 358 148335 230.10 26 86.15 Changed Enoyl-(Acyl carrier protein) reductase
ADH_zinc_N PF00107 Family 88 91553 128.10 20 31.52 Changed Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 Domain 137 18657 131.80 21 19.83 Changed Zinc-binding dehydrogenase
ADIP PF11559 Coiled-coil 19 886 146.60 27 26.07 Changed Afadin- and alpha -actinin-Binding
Adipogenin PF15202 Family 3 44 70.80 69 60.92 Changed Adipogenin
Adipokin_hormo PF06377 Family 15 93 52.90 41 47.95 Changed Adipokinetic hormone
ADK PF00406 Domain 21 16759 167.40 32 63.47 Changed Adenylate kinase
ADK_lid PF05191 Domain 578 7201 36.30 47 15.90 Changed Adenylate kinase, active site lid
AdoHcyase PF05221 Domain 165 11735 276.90 35 95.51 Changed S-adenosyl-L-homocysteine hydrolase
AdoHcyase_NAD PF00670 Domain 15 7700 159.30 52 35.57 Changed S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AdoMetDC_leader PF08132 Family 3 170 49.30 75 25.12 Changed S-adenosyl-l-methionine decarboxylase leader peptide
AdoMet_dc PF02675 Family 266 3190 114.90 30 61.24 Changed S-adenosylmethionine decarboxylase
AdoMet_MTase PF07757 Family 3 902 106.50 42 20.46 Changed Predicted AdoMet-dependent methyltransferase
AdoMet_Synthase PF01941 Family 101 507 377.00 43 97.68 Changed S-adenosylmethionine synthetase (AdoMet synthetase)
ADPrib_exo_Tox PF03496 Family 22 469 178.70 17 27.90 Changed ADP-ribosyltransferase exoenzyme
ADPRTs_Tse2 PF18648 Domain 6 51 118.90 25 70.92 New Tse2 ADP-ribosyltransferase toxins
ADP_PFK_GK PF04587 Family 79 629 378.40 26 85.09 Changed ADP-specific Phosphofructokinase/Glucokinase conserved region
ADP_ribosyl_GH PF03747 Family 774 7844 276.90 20 74.70 Changed ADP-ribosylglycohydrolase
ADSL_C PF10397 Domain 811 6694 80.50 26 17.73 Changed Adenylosuccinate lyase C-terminus
Ad_cyc_g-alpha PF08509 Domain 23 292 46.80 34 2.25 Changed Adenylate cyclase G-alpha binding domain
Ad_Cy_reg PF16701 Domain 13 667 155.80 30 42.54 Changed Adenylate cyclase regulatory domain
Aegerolysin PF06355 Family 18 260 124.20 25 81.68 Changed Aegerolysin
AEP1 PF17049 Family 13 35 351.30 21 69.48 Changed ATPase expression protein 1
Aerolysin PF01117 Domain 5 160 239.10 19 51.40 Changed Aerolysin toxin
AF-4 PF05110 Family 33 1123 600.20 24 85.40 Changed AF-4 proto-oncoprotein
AF0941-like PF14591 Domain 7 26 88.70 35 88.82 Changed AF0941-like
AF2331-like PF14556 Domain 3 3 91.00 47 97.50 Changed AF2331-like
AfaD PF05775 Family 1 8 104.40 30 72.99 Changed Enterobacteria AfaD invasin protein
Afaf PF15339 Family 12 54 152.60 59 57.94 Changed Acrosome formation-associated factor
AFG1_ATPase PF03969 Family 7 6474 279.90 26 82.11 Changed AFG1-like ATPase
Afi1 PF07792 Domain 24 559 113.80 41 14.44 Changed Docking domain of Afi1 for Arf3 in vesicle trafficking
AflR PF08493 Family 5 334 240.00 15 56.00 Changed Aflatoxin regulatory protein
AFOR_C PF01314 Domain 250 2517 366.60 26 62.37 Changed Aldehyde ferredoxin oxidoreductase, domains 2 & 3
AFOR_N PF02730 Domain 474 2458 198.80 35 33.26 Changed Aldehyde ferredoxin oxidoreductase, N-terminal domain
AFP PF02420 Repeat 9 8 10.20 85 23.84 Changed Insect antifreeze protein repeat
AFP_2 PF18815 Repeat 5 11 51.40 53 1.98 New Bacterial antifreeze protein repeat
AfsA PF03756 Domain 15 1091 125.30 21 70.39 Changed A-factor biosynthesis hotdog domain
AFT PF08731 Family 8 137 94.90 28 19.72 Changed Transcription factor AFT
Aft1_HRA PF11786 Domain 10 423 76.10 56 13.86 Changed Aft1 HRA domain
Aft1_HRR PF11787 Domain 43 298 75.90 49 14.61 Changed Aft1 HRR domain
Aft1_OSA PF11785 Domain 28 411 50.50 41 9.50 Changed Aft1 osmotic stress response (OSM) domain
AftA_C PF12249 Family 37 288 172.00 48 27.43 Changed Arabinofuranosyltransferase A C terminal
AftA_N PF12250 Family 34 305 416.80 41 68.40 Changed Arabinofuranosyltransferase N terminal
Ag332 PF04671 Repeat 25 363 20.90 53 10.61 Changed Erythrocyte membrane-associated giant protein antigen 332
AGA2 PF17366 Family 15 22 59.00 41 61.79 Changed A-agglutinin-binding subunit Aga2
Agarase_CBM PF17992 Domain 13 125 173.30 23 22.22 New Agarase CBM like domain
Agenet PF05641 Domain 172 3307 63.10 28 11.35 Changed Agenet domain
Agglutinin PF07468 Domain 2 233 136.30 24 51.10 Changed Agglutinin domain
Agglutinin_C PF18021 Domain 23 57 89.80 31 34.53 New Agglutinin C-terminal
AGH PF17558 Family 4 0 0.00 0 0.00 Changed Androgenic gland hormone
AgI_II_C2 PF17998 Domain 57 198 159.00 24 21.94 New Cell surface antigen I/II C2 terminal domain
AglB_L1 PF18079 Domain 23 242 92.70 33 10.51 New Archaeal glycosylation protein B long peripheral domain
AGOG PF09171 Domain 15 69 221.10 28 81.53 Changed N-glycosylase/DNA lyase
Agouti PF05039 Family 17 204 88.40 35 65.27 Changed Agouti protein
Ago_hook PF10427 Family 25 500 149.10 41 8.86 Changed Argonaute hook
AGO_N PF18236 Domain 10 11 125.80 57 10.17 New Argonaute N domain
Ago_N_1 PF18351 Domain 8 11 96.90 54 7.84 New Fungal Argonaute N-terminal domain
Ago_PAZ PF18309 Domain 9 16 89.10 35 12.55 New Argonaute PAZ domain
AGP PF06376 Family 19 465 35.20 61 43.97 Changed Arabinogalactan peptide
aGPT-Pplase1 PF18723 Domain 95 237 261.30 30 62.41 New alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1
aGPT-Pplase2 PF18724 Domain 27 39 229.30 24 70.81 New Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 2
aGPT-Pplase3 PF18746 Domain 16 21 252.00 36 88.96 New Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 3
AgrB PF04647 Family 221 922 172.40 18 89.73 Changed Accessory gene regulator B
AgrD PF05931 Family 2 26 43.00 41 94.59 Changed Staphylococcal AgrD protein
Agro_virD5 PF04730 Family 2 11 289.80 30 38.18 Changed Agrobacterium VirD5 protein
AGS_C PF18134 Domain 74 232 129.70 27 30.40 New Adenylyl/Guanylyl and SMODS C-terminal sensor domain
AGT PF11440 Family 1 8 319.50 31 71.82 Changed DNA alpha-glucosyltransferase
AGTRAP PF06396 Family 13 245 133.30 34 81.80 Changed Angiotensin II, type I receptor-associated protein (AGTRAP)
Aha1_N PF09229 Domain 237 1670 131.10 26 41.15 Changed Activator of Hsp90 ATPase, N-terminal
AHD PF17793 Domain 13 353 62.10 61 10.64 New ANC1 homology domain (AHD)
AHH PF14412 Family 83 542 107.80 17 21.16 Changed A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
AHJR-like PF18743 Domain 12 71 115.20 25 58.47 New REase_AHJR-like
AHL_synthase PF17327 Family 10 36 345.80 30 94.80 Changed Acyl homoserine lactone synthase
AhpC-TSA PF00578 Domain 96 43155 126.50 22 57.39 Changed AhpC/TSA family
AhpC-TSA_2 PF13911 Domain 49 1773 121.00 19 41.20 Changed AhpC/TSA antioxidant enzyme
AHSA1 PF08327 Family 93 15181 127.50 18 71.60 Changed Activator of Hsp90 ATPase homolog 1-like protein
AHSP PF09236 Domain 13 44 85.20 67 85.72 Changed Alpha-haemoglobin stabilising protein
AI-2E_transport PF01594 Family 29 21687 320.40 18 85.07 Changed AI-2E family transporter
AIB PF15334 Family 15 46 289.70 58 81.94 Changed Aurora kinase A and ninein interacting protein
AICARFT_IMPCHas PF01808 Family 747 8643 298.20 38 59.57 Changed AICARFT/IMPCHase bienzyme
AID PF18767 Family 5 13 84.20 30 53.94 New Activation induced deaminase
AIDA PF16168 Repeat 15 353 55.40 37 17.13 Changed Adhesin of bacterial autotransporter system, probable stalk
Aida_C2 PF14186 Domain 17 233 135.20 52 24.51 Changed Cytoskeletal adhesion
Aida_N PF08910 Family 14 173 88.50 59 32.21 Changed Aida N-terminus
AidB_N PF18158 Domain 47 3087 157.00 29 27.76 New Adaptive response protein AidB N-terminal domain
AIF-MLS PF14962 Family 12 156 142.10 32 34.10 Changed Mitochondria Localisation Sequence
AIF_C PF14721 Domain 36 623 88.30 38 19.55 Changed Apoptosis-inducing factor, mitochondrion-associated, C-term
AIG1 PF04548 Domain 32 4508 183.80 24 43.44 Changed AIG1 family
AIG2_2 PF13772 Family 19 1631 84.00 33 43.11 Changed AIG2-like family
Ail_Lom PF06316 Family 2 122 179.30 33 93.49 Changed Enterobacterial Ail/Lom protein
Aim19 PF10315 Family 35 175 115.60 27 73.79 Changed Altered inheritance of mitochondria protein 19
Aim21 PF11489 Family 12 377 673.40 34 77.56 Changed Altered inheritance of mitochondria protein 21
AIM24 PF01987 Family 517 5937 205.00 25 75.29 Changed Mitochondrial biogenesis AIM24
AIM3 PF17096 Family 21 59 89.10 31 12.13 Changed Altered inheritance of mitochondria protein 3
AIM5 PF17050 Family 108 367 64.70 29 33.58 Changed Altered inheritance of mitochondria 5
AIMP2_LysRS_bd PF16780 Domain 10 91 46.10 53 15.18 Changed AIMP2 lysyl-tRNA synthetase binding domain
AIP3 PF03915 Family 96 1458 277.50 22 28.07 Changed Actin interacting protein 3
AIPR PF10592 Family 65 980 299.80 20 51.87 Changed AIPR protein
AIRC PF00731 Domain 700 10123 144.30 44 64.06 Changed AIR carboxylase
AIRS PF00586 Domain 1289 27545 120.40 23 31.46 Changed AIR synthase related protein, N-terminal domain
AIRS_C PF02769 Domain 132 34111 158.00 18 34.78 Changed AIR synthase related protein, C-terminal domain
AJAP1_PANP_C PF15298 Family 10 194 139.90 43 47.69 Changed AJAP1/PANP C-terminus
AKAP28 PF14469 Family 32 220 109.70 28 40.92 Changed 28 kDa A-kinase anchor
AKAP2_C PF15304 Family 15 369 202.60 23 31.74 Changed A-kinase anchor protein 2 C-terminus
AKAP7_NLS PF10469 Domain 33 1605 206.60 21 56.81 Changed AKAP7 2'5' RNA ligase-like domain
AKAP7_RIRII_bdg PF10470 Domain 7 184 56.50 52 32.67 Changed PKA-RI-RII subunit binding domain of A-kinase anchor protein
AKAP95 PF04988 Family 13 404 145.30 54 28.47 Changed A-kinase anchoring protein 95 (AKAP95)
AKAP_110 PF05716 Family 7 401 232.70 24 29.47 Changed A-kinase anchor protein 110 kDa (AKAP 110)
AKNA PF12443 Family 24 125 95.70 35 9.57 Changed AT-hook-containing transcription factor
ALAD PF00490 Domain 683 7411 310.60 47 93.16 Changed Delta-aminolevulinic acid dehydratase
AlaDh_PNT_C PF01262 Domain 75 11002 207.90 32 47.17 Changed Alanine dehydrogenase/PNT, C-terminal domain
AlaDh_PNT_N PF05222 Domain 281 11755 133.30 32 28.80 Changed Alanine dehydrogenase/PNT, N-terminal domain
AlaE PF06610 Family 12 193 135.30 47 92.37 Changed L-alanine exporter
Alanine_zipper PF11839 Family 25 380 65.00 32 47.07 Changed Alanine-zipper, major outer membrane lipoprotein
Ala_racemase_C PF00842 Domain 1075 8436 125.60 35 30.91 Changed Alanine racemase, C-terminal domain
Ala_racemase_N PF01168 Domain 314 22226 220.50 20 64.72 Changed Alanine racemase, N-terminal domain
Alb1 PF09135 Family 88 443 105.90 31 56.78 Changed Alb1
Alba PF01918 Family 87 2402 65.20 28 33.18 Changed Alba
AlbA_2 PF04326 Domain 86 5530 122.80 20 27.14 Changed Putative DNA-binding domain
Albumin_I PF08027 Domain 2 39 35.30 62 27.35 Changed Albumin I chain b
Albumin_I_a PF16720 Domain 1 79 47.50 62 37.38 Changed Albumin I chain a
ALC PF17527 Family 2 32 160.80 36 97.17 Changed Phage ALC protein
AlcCBM31 PF11606 Family 3 14 87.70 34 10.13 Changed Family 31 carbohydrate binding protein
Aldedh PF00171 Family 96 98431 410.70 25 83.73 Changed Aldehyde dehydrogenase family
Aldolase PF01081 Domain 5 7289 192.10 32 88.19 Changed KDPG and KHG aldolase
Aldolase_II PF00596 Domain 389 16928 183.50 22 58.24 Changed Class II Aldolase and Adducin N-terminal domain
Aldose_epim PF01263 Family 65 14081 287.30 18 88.37 Changed Aldose 1-epimerase
Aldo_ket_red PF00248 Domain 34 76331 260.80 23 84.74 Changed Aldo/keto reductase family
Ald_deCOase PF11266 Domain 22 189 211.10 54 83.54 Changed Long-chain fatty aldehyde decarbonylase
Ald_Xan_dh_C PF01315 Domain 25 13053 110.40 31 12.88 Changed Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Ald_Xan_dh_C2 PF02738 Family 520 26496 352.20 18 63.94 Changed Molybdopterin-binding domain of aldehyde dehydrogenase
ALF PF03752 Repeat 135 1248 41.20 33 21.82 Changed Short repeats of unknown function
Alfin PF12165 Family 28 1077 117.20 69 49.60 Changed Alfin
ALG11_N PF15924 Family 169 1172 195.70 45 39.52 Changed ALG11 mannosyltransferase N-terminus
Alg14 PF08660 Family 23 1717 149.20 28 70.41 Changed Oligosaccharide biosynthesis protein Alg14 like
ALG3 PF05208 Family 150 1184 314.20 40 77.91 Changed ALG3 protein
Alg6_Alg8 PF03155 Family 223 2586 361.60 29 81.89 Changed ALG6, ALG8 glycosyltransferase family
AlgF PF11182 Family 6 216 179.30 31 82.11 Changed Alginate O-acetyl transferase AlgF
Alginate_exp PF13372 Domain 18 1812 350.10 16 76.61 Changed Alginate export
Alginate_lyase PF05426 Domain 54 2506 254.70 16 48.32 Changed Alginate lyase
Alginate_lyase2 PF08787 Domain 67 1129 220.20 24 71.34 Changed Alginate lyase
ALGX PF16822 Domain 31 1128 213.70 17 52.23 Changed SGNH hydrolase-like domain, acetyltransferase AlgX
ALIX_LYPXL_bnd PF13949 Domain 191 2042 280.40 22 29.98 Changed ALIX V-shaped domain binding to HIV
AlkA_N PF06029 Domain 54 1875 117.90 37 25.84 Changed AlkA N-terminal domain
Alkyl_sulf_C PF14864 Domain 83 1310 121.20 24 20.43 Changed Alkyl sulfatase C-terminal
Alkyl_sulf_dimr PF14863 Domain 164 1592 135.60 38 23.33 Changed Alkyl sulfatase dimerisation
Alk_phosphatase PF00245 Domain 10 5867 364.40 27 77.63 Changed Alkaline phosphatase
Allantoicase PF03561 Family 330 3386 144.40 37 67.87 Changed Allantoicase repeat
Allatostatin PF05953 Repeat 3 309 10.60 60 28.30 Changed Allatostatin
Allene_ox_cyc PF06351 Family 10 212 163.70 65 68.48 Changed Allene oxide cyclase
Allexi_40kDa PF05549 Family 7 10 249.20 32 74.52 Changed Allexivirus 40kDa protein
Alliinase_C PF04864 Domain 10 608 295.00 43 79.51 Changed Allinase
ALMS_motif PF15309 Family 19 443 121.80 30 8.46 Changed ALMS motif
ALMS_repeat PF18727 Repeat 22 1714 46.10 48 35.80 New Alstrom syndrome repeat
ALMT PF11744 Family 16 1509 326.30 32 71.73 Changed Aluminium activated malate transporter
ALO PF04030 Family 26 4237 196.10 22 41.53 Changed D-arabinono-1,4-lactone oxidase
Alpha-2-MRAP_C PF06401 Domain 31 301 197.20 37 61.91 Changed Alpha-2-macroglobulin RAP, C-terminal domain
Alpha-2-MRAP_N PF06400 Domain 25 233 103.40 45 30.74 Changed Alpha-2-macroglobulin RAP, N-terminal domain
Alpha-amylase PF00128 Domain 19 49581 233.90 19 37.95 Changed Alpha amylase, catalytic domain
Alpha-amylase_C PF02806 Domain 242 8576 94.10 26 13.57 Changed Alpha amylase, C-terminal all-beta domain
Alpha-amylase_N PF02903 Domain 35 1124 117.00 24 19.13 Changed Alpha amylase, N-terminal ig-like domain
Alpha-amyl_C PF09071 Domain 3 5 66.00 31 15.17 Changed Alpha-amylase, C terminal
Alpha-amyl_C2 PF07821 Domain 65 709 59.10 43 10.18 Changed Alpha-amylase C-terminal beta-sheet domain
Alpha-E PF04168 Family 396 3870 301.50 25 63.13 Changed A predicted alpha-helical domain with a conserved ER motif.
alpha-hel2 PF14456 Family 9 56 290.70 18 83.11 Changed Alpha-helical domain 2
Alpha-L-AF_C PF06964 Domain 272 4430 201.00 22 34.24 Changed Alpha-L-arabinofuranosidase C-terminal domain
Alpha-mann_mid PF09261 Domain 45 5196 96.90 27 9.62 Changed Alpha mannosidase middle domain
AlphaC_C PF17480 Domain 2 4 71.20 60 11.60 Changed AlphaC C-terminal
AlphaC_N PF08829 Domain 2 4 105.50 61 17.18 Changed Alpha C protein N terminal
Alpha_adaptinC2 PF02883 Domain 98 4235 109.20 19 13.25 Changed Adaptin C-terminal domain
Alpha_adaptin_C PF02296 Family 19 1192 108.90 40 11.77 Changed Alpha adaptin AP2, C-terminal domain
Alpha_E1_glycop PF01589 Family 2 5 323.80 53 30.03 Changed Alphavirus E1 glycoprotein
Alpha_E2_glycop PF00943 Family 3 5 405.00 54 37.56 Changed Alphavirus E2 glycoprotein
Alpha_E3_glycop PF01563 Family 3 5 57.40 63 5.32 Changed Alphavirus E3 glycoprotein
Alpha_GJ PF03229 Family 5 31 104.00 17 32.48 Changed Alphavirus glycoprotein J
Alpha_Helical PF18489 Domain 17 57 122.50 38 52.14 New Alpha helical domain
Alpha_kinase PF02816 Family 194 2081 175.70 23 22.24 Changed Alpha-kinase family
Alpha_L_fucos PF01120 Domain 121 6012 323.10 25 62.96 Changed Alpha-L-fucosidase
Alpha_TIF PF02232 Family 3 27 340.00 42 75.02 Changed Alpha trans-inducing protein (Alpha-TIF)
Alph_Pro_TM PF09608 Family 71 903 228.40 34 88.48 Changed Putative transmembrane protein (Alph_Pro_TM)
ALP_N PF17989 Domain 74 1099 151.60 19 44.44 New Actin like proteins N terminal domain
ALS2CR11 PF15729 Family 9 101 270.10 42 39.18 Changed Amyotrophic lateral sclerosis 2 candidate 11
ALS2CR8 PF15299 Family 20 237 195.90 37 33.06 Changed Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
ALS_ss_C PF10369 Family 685 7453 73.40 36 39.26 Changed Small subunit of acetolactate synthase
AltA1 PF16541 Domain 63 266 117.20 23 63.66 Changed Alternaria alternata allergen 1
Alveol-reg_P311 PF11092 Family 7 110 60.40 60 87.32 Changed Neuronal protein 3.1 (p311)
AMA-1 PF02430 Family 5 148 271.50 26 38.31 Changed Apical membrane antigen 1
Amastin PF07344 Family 73 378 156.80 22 71.01 Changed Amastin surface glycoprotein
Amb_V_allergen PF03913 Family 3 0 0.00 0 0.00 Changed Amb V Allergen
Amdase PF17645 Family 12 2396 194.00 25 76.77 New Arylmalonate decarboxylase
Amdo_NSP PF12475 Family 2 4 39.20 49 19.85 Changed Amdovirus non-structural protein
Amelin PF05111 Family 11 78 323.50 58 94.28 Changed Ameloblastin precursor (Amelin)
Amelogenin PF02948 Family 3 114 149.10 64 70.63 Changed Amelogenin
Amelotin PF15757 Family 15 47 180.10 66 86.46 Changed Amelotin
amfpi-1 PF12190 Family 2 9 88.80 37 53.09 Changed Fungal protease inhibitor
AMH_N PF04709 Family 19 94 288.30 35 62.06 Changed Anti-Mullerian hormone, N terminal region
Amidase PF01425 Family 34 36981 373.50 24 80.53 Changed Amidase
Amidase02_C PF12123 Domain 7 29 45.10 42 17.47 Changed N-acetylmuramoyl-l-alanine amidase
Amidase_2 PF01510 Domain 623 11334 137.30 22 43.38 Changed N-acetylmuramoyl-L-alanine amidase
Amidase_3 PF01520 Domain 71 12261 192.50 27 50.58 Changed N-acetylmuramoyl-L-alanine amidase
Amidase_5 PF05382 Family 4 261 136.00 29 37.65 Changed Bacteriophage peptidoglycan hydrolase
Amidase_6 PF12671 Domain 34 1144 157.20 27 47.85 Changed Putative amidase domain
Amidinotransf PF02274 Family 31 6346 287.60 20 85.03 Changed Amidinotransferase
Amidohydro_1 PF01979 Domain 57 62127 321.70 14 69.71 Changed Amidohydrolase family
Amidohydro_2 PF04909 Domain 81 21908 287.10 14 84.55 Changed Amidohydrolase
Amidohydro_3 PF07969 Domain 42 18567 378.20 16 78.28 Changed Amidohydrolase family
Amidoligase_2 PF12224 Family 24 1382 235.20 16 58.99 Changed Putative amidoligase enzyme
Amido_AtzD_TrzD PF09663 Family 21 284 339.90 46 94.33 Changed Amidohydrolase ring-opening protein (Amido_AtzD_TrzD)
AMIN PF11741 Family 121 4806 98.30 19 19.38 Changed AMIN domain
Aminoglyc_resit PF10706 Family 2 295 113.50 23 61.51 Changed Aminoglycoside-2''-adenylyltransferase
Aminopep PF10023 Family 44 549 313.30 38 88.75 Changed Putative aminopeptidase
Aminotran_1_2 PF00155 Domain 48 104216 339.00 17 81.25 Changed Aminotransferase class I and II
Aminotran_3 PF00202 Domain 14 48480 383.10 26 84.65 Changed Aminotransferase class-III
Aminotran_4 PF01063 Domain 70 21470 226.60 23 68.59 Changed Amino-transferase class IV
Aminotran_5 PF00266 Domain 35 51858 328.00 18 81.66 Changed Aminotransferase class-V
Aminotran_MocR PF12897 Domain 4 1004 407.20 49 97.63 Changed Alanine-glyoxylate amino-transferase
Amino_oxidase PF01593 Domain 83 34345 376.80 13 77.01 Changed Flavin containing amine oxidoreductase
AmiS_UreI PF02293 Family 51 352 164.20 37 87.46 Changed AmiS/UreI family transporter
Amj PF10997 Family 50 347 243.00 37 93.78 Changed Alternate to MurJ
AMMECR1 PF01871 Family 377 2836 172.40 30 61.89 Changed AMMECR1
Ammonium_transp PF00909 Family 25 14028 377.10 30 84.57 Changed Ammonium Transporter Family
Amnionless PF14828 Family 35 306 323.40 20 80.09 Changed Amnionless
AMNp_N PF10423 Domain 101 1363 155.90 36 31.91 Changed Bacterial AMP nucleoside phosphorylase N-terminus
AMO PF02461 Family 10 102 233.90 51 91.03 Changed Ammonia monooxygenase
AmoC PF04896 Family 13 171 214.90 43 91.62 Changed Ammonia monooxygenase/methane monooxygenase, subunit C
AMOP PF03782 Domain 44 943 145.80 31 16.39 Changed AMOP domain
AMP-binding PF00501 Family 145 157533 384.80 20 51.83 Changed AMP-binding enzyme
AMP-binding_C PF13193 Domain 272 97760 77.00 29 10.21 Changed AMP-binding enzyme C-terminal domain
AMP-binding_C_2 PF14535 Domain 171 3949 94.80 31 21.44 Changed AMP-binding enzyme C-terminal domain
AmpE PF17113 Family 8 437 248.80 27 91.15 Changed Regulatory signalling modulator protein AmpE
AMPK1_CBM PF16561 Family 98 4544 83.80 26 19.31 Changed Glycogen recognition site of AMP-activated protein kinase
AMPKBI PF04739 Family 101 1632 75.60 46 21.73 Changed 5'-AMP-activated protein kinase beta subunit, interaction domain
AMP_N PF05195 Domain 522 6341 122.40 24 25.81 Changed Aminopeptidase P, N-terminal domain
ANAPC1 PF12859 Family 63 754 116.00 25 6.45 Changed Anaphase-promoting complex subunit 1
ANAPC10 PF03256 Family 8 2134 166.60 26 12.31 Changed Anaphase-promoting complex, subunit 10 (APC10)
ANAPC15 PF15243 Family 39 325 90.70 40 73.21 Changed Anaphase-promoting complex subunit 15
ANAPC16 PF17256 Family 38 137 70.90 90 70.60 Changed Anaphase-promoting complex, subunit 16
ANAPC2 PF08672 Domain 95 903 58.60 39 7.46 Changed Anaphase promoting complex (APC) subunit 2
ANAPC3 PF12895 Domain 79 4909 80.00 18 12.90 Changed Anaphase-promoting complex, cyclosome, subunit 3
ANAPC4 PF12896 Domain 98 960 192.00 24 25.20 Changed Anaphase-promoting complex, cyclosome, subunit 4
ANAPC4_WD40 PF12894 Repeat 24 12765 84.50 17 12.72 Changed Anaphase-promoting complex subunit 4 WD40 domain
ANAPC5 PF12862 Family 26 1354 89.10 23 13.30 Changed Anaphase-promoting complex subunit 5
ANAPC8 PF04049 Family 70 1013 141.90 31 23.72 Changed Anaphase promoting complex subunit 8 / Cdc23
ANAPC9 PF12856 Family 11 47 122.10 23 36.61 Changed Anaphase-promoting complex subunit 9
ANAPC_CDC26 PF10471 Family 37 420 75.60 24 52.31 Changed Anaphase-promoting complex APC subunit CDC26
ANATO PF01821 Domain 119 651 35.80 40 2.64 Changed Anaphylotoxin-like domain
Androgen_recep PF02166 Family 2 131 328.90 60 51.91 Changed Androgen receptor
Anemone_cytotox PF06369 Family 3 79 144.20 27 79.65 Changed Sea anemone cytotoxic protein
AnfG_VnfG PF03139 Family 22 76 111.00 48 76.34 Changed Vanadium/alternative nitrogenase delta subunit
AnfO_nitrog PF09582 Family 41 144 189.30 27 89.38 Changed Iron only nitrogenase protein AnfO (AnfO_nitrog)
ANF_receptor PF01094 Family 74 17818 304.60 14 39.60 Changed Receptor family ligand binding region
Angiomotin_C PF12240 Family 18 514 193.60 54 23.73 Changed Angiomotin C terminal
Anillin PF08174 Domain 87 1193 142.10 22 15.18 Changed Cell division protein anillin
Anillin_N PF16018 Family 21 248 83.30 37 9.83 Changed Anillin N-terminus
Ank PF00023 Repeat 1063 12100 33.70 30 4.67 Changed Ankyrin repeat
ANKH PF07260 Family 3 197 285.20 54 67.38 Changed Progressive ankylosis protein (ANKH)
AnkUBD PF18418 Domain 2 229 92.30 64 13.23 New Ankyrin ubiquitin-binding domain
Ank_2 PF12796 Repeat 199 255525 88.20 23 29.73 Changed Ankyrin repeats (3 copies)
Ank_3 PF13606 Repeat 167 3312 29.80 31 4.32 Changed Ankyrin repeat
Ank_4 PF13637 Repeat 62 33865 53.40 29 8.25 Changed Ankyrin repeats (many copies)
Ank_5 PF13857 Repeat 52 20100 54.00 29 7.59 Changed Ankyrin repeats (many copies)
AnmK PF03702 Family 8 4057 355.40 34 95.09 Changed Anhydro-N-acetylmuramic acid kinase
Annexin PF00191 Family 100 18048 64.70 28 60.85 Changed Annexin
Annexin_like PF18411 Domain 4 291 91.70 80 8.67 New Annexin-like domain
Anoctamin PF04547 Family 370 4491 442.10 25 58.87 Changed Calcium-activated chloride channel
Anoct_dimer PF16178 Family 131 1915 204.50 31 24.60 Changed Dimerisation domain of Ca+-activated chloride-channel, anoctamin
Anophelin PF10731 Family 1 11 64.70 63 65.44 Changed Thrombin inhibitor from mosquito
ANP PF00212 Family 29 345 31.10 53 21.56 Changed Atrial natriuretic peptide
Anp1 PF03452 Family 132 1441 253.60 44 58.63 Changed Anp1
ANT PF03374 Family 133 1500 104.70 24 42.83 Changed Phage antirepressor protein KilAC domain
AntA PF08346 Family 67 549 69.50 37 30.16 Changed AntA/AntB antirepressor
ANTAR PF03861 Domain 737 7907 53.70 30 22.57 Changed ANTAR domain
ANTH PF07651 Domain 28 4685 240.40 24 36.78 Changed ANTH domain
Anthrax-tox_M PF09156 Domain 1 3 139.30 63 41.84 Changed Anthrax toxin lethal factor, middle domain
Anthrax_toxA PF03497 Family 6 61 156.10 27 20.50 Changed Anthrax toxin LF subunit
Anth_Ig PF05587 Domain 44 416 98.60 52 21.16 Changed Anthrax receptor extracellular domain
Anth_synt_I_N PF04715 Family 55 10146 143.50 22 26.96 Changed Anthranilate synthase component I, N terminal region
Anti-adapt_IraP PF10796 Family 19 122 84.40 40 90.49 Changed Sigma-S stabilisation anti-adaptor protein
Anti-TRAP PF15777 Domain 4 25 54.80 39 82.00 Changed Tryptophan RNA-binding attenuator protein inhibitory protein
Antibiotic_NAT PF02522 Domain 127 1173 220.70 29 80.65 Changed Aminoglycoside 3-N-acetyltransferase
Anticodon_1 PF08264 Domain 161 35429 143.80 19 16.06 Changed Anticodon-binding domain of tRNA
Antifungal_pept PF11410 Family 6 87 32.30 47 42.10 Changed Antifungal peptide
Antifungal_prot PF11402 Family 9 41 48.60 43 53.75 Changed Antifungal protein
Antigen_Bd37 PF11641 Family 4 0 0.00 0 0.00 Changed Glycosylphosphatidylinositol-anchored merozoite surface protein
Antigen_C PF16364 Domain 18 100 162.60 37 14.59 Changed Cell surface antigen C-terminus
Antig_Caf1 PF09255 Domain 1 1 136.00 100 80.00 Changed Caf1 Capsule antigen
Antimicrobial10 PF08105 Family 2 6 50.00 72 96.15 Changed Metchnikowin family
Antimicrobial11 PF08106 Family 2 0 0.00 0 0.00 Changed Formaecin family
Antimicrobial12 PF08107 Family 4 5 39.80 45 46.50 Changed Pleurocidin family
Antimicrobial13 PF08108 Family 2 0 0.00 0 0.00 Changed Halocidin family
Antimicrobial14 PF08109 Family 2 0 0.00 0 0.00 Changed Lactocin 705 family
Antimicrobial15 PF08110 Family 3 0 0.00 0 0.00 Changed Ocellatin family
Antimicrobial17 PF08129 Family 2 0 0.00 0 0.00 Changed Alpha/beta enterocin family
Antimicrobial18 PF08130 Family 2 0 0.00 0 0.00 Changed Type A lantibiotic family
Antimicrobial19 PF08225 Family 2 0 0.00 0 0.00 Changed Pseudin antimicrobial peptide
Antimicrobial20 PF08256 Family 14 0 0.00 0 0.00 Changed Aurein-like antibiotic peptide
Antimicrobial21 PF14861 Domain 30 124 30.20 41 40.89 Changed Plant antimicrobial peptide
Antimicrobial22 PF16047 Family 9 0 0.00 0 0.00 Changed Frog antimicrobial peptide
Antimicrobial23 PF16048 Family 5 0 0.00 0 0.00 Changed Frog antimicrobial peptide
Antimicrobial24 PF16049 Family 3 0 0.00 0 0.00 Changed Frog antimicrobial peptide
Antimicrobial25 PF16839 Domain 6 110 50.30 58 59.06 Changed Nematode antimicrobial peptide
Antimicrobial_1 PF08018 Family 25 1 24.00 100 53.33 Changed Frog antimicrobial peptide
Antimicrobial_2 PF08023 Family 18 5 27.60 36 48.08 Changed Frog antimicrobial peptide
Antimicrobial_3 PF08025 Family 2 0 0.00 0 0.00 Changed Spider antimicrobial peptide
Antimicrobial_4 PF08024 Family 5 0 0.00 0 0.00 Changed Ant antimicrobial peptide
Antimicrobial_5 PF08026 Family 6 11 29.50 71 51.02 Changed Bee antimicrobial peptide
Antimicrobial_6 PF08036 Family 3 10 38.80 55 50.46 Changed Diapausin family of antimicrobial peptide
Antimicrobial_7 PF08102 Family 4 0 0.00 0 0.00 Changed Scorpion antimicrobial peptide
Antimicrobial_8 PF08103 Family 4 0 0.00 0 0.00 Changed Uperin family
Antimicrobial_9 PF08104 Family 2 0 0.00 0 0.00 Changed Ponericin L family
Antirestrict PF03230 Family 27 299 92.40 34 64.35 Changed Antirestriction protein
Antistasin PF02822 Domain 210 1439 27.40 42 8.51 Changed Antistasin family
Antiterm PF03589 Domain 22 250 86.70 28 70.18 Changed Antitermination protein
Ant_C PF05586 Family 22 395 90.00 68 22.56 Changed Anthrax receptor C-terminus region
ANXA2R PF15721 Family 7 27 160.80 41 90.21 Changed Annexin-2 receptor
An_peroxidase PF03098 Domain 393 8150 350.00 20 52.50 Changed Animal haem peroxidase
AOC_like PF18678 Domain 13 37 120.80 28 65.38 New Allene oxide cyclase barrel like domain
AOX PF01786 Family 119 1598 200.60 41 63.54 Changed Alternative oxidase
AP-5_subunit_s1 PF15001 Family 16 145 170.40 36 79.23 Changed AP-5 complex subunit sigma-1
AP1AR PF15745 Family 5 190 216.90 62 84.82 Changed AP-1 complex-associated regulatory protein
AP2 PF00847 Domain 73 18629 52.60 39 15.46 Changed AP2 domain
AP3B1_C PF14796 Family 44 595 140.90 29 13.61 Changed Clathrin-adaptor complex-3 beta-1 subunit C-terminal
AP3D1 PF06375 Family 23 363 137.10 36 12.98 Changed AP-3 complex subunit delta-1
AP4E_app_platf PF14807 Domain 28 174 98.50 33 9.70 Changed Adaptin AP4 complex epsilon appendage platform
APA3_viroporin PF11289 Family 1 8 204.10 49 86.45 Changed Coronavirus accessory protein 3a
APAF1_C PF17908 Domain 6 460 122.90 24 9.92 New APAF-1 helical domain
ApbA PF02558 Family 81 9743 151.20 20 43.19 Changed Ketopantoate reductase PanE/ApbA
ApbA_C PF08546 Family 86 9186 126.40 22 35.79 Changed Ketopantoate reductase PanE/ApbA C terminal
ApbE PF02424 Family 827 7142 248.80 25 82.17 Changed ApbE family
Apc13p PF05839 Family 7 572 79.50 35 45.60 Changed Apc13p protein
Apc15p PF05841 Family 22 354 99.30 28 26.60 Changed Apc15p protein
APC1_C PF18122 Domain 33 456 162.80 24 9.81 New Anaphase-promoting complex sub unit 1 C-terminal domain
APCDDC PF14921 Domain 25 532 200.30 36 79.05 Changed Adenomatosis polyposis coli down-regulated 1
APC_15aa PF05972 Motif 11 671 15.00 58 1.69 Changed APC 15 residue motif
APC_basic PF05956 Family 13 239 318.10 52 12.92 Changed APC basic domain
APC_N_CC PF16689 Family 6 234 51.90 81 2.37 Changed Coiled-coil N-terminus of APC, dimerisation domain
APC_r PF05923 Motif 50 1714 23.70 50 4.79 Changed APC repeat
APC_rep PF18797 Repeat 7 380 71.70 53 3.22 New Adenomatous polyposis coli (APC) repeat
APC_u13 PF16634 Disordered 10 146 53.80 70 1.97 Changed Unstructured region on APC between APC_crr and SAMP
APC_u14 PF16635 Disordered 11 147 93.00 71 3.39 Changed Unstructured region on APC between SAMP and APC_crr
APC_u15 PF16636 Disordered 10 148 76.40 66 2.79 Changed Unstructured region on APC between APC_crr regions 5 and 6
APC_u5 PF16630 Disordered 9 149 100.10 78 3.67 Changed Unstructured region on APC between 1st and 2nd catenin-bdg motifs
APC_u9 PF16633 Disordered 10 149 87.30 72 3.19 Changed Unstructured region on APC between 1st two creatine-rich regions
ApeA_NTD1 PF18862 Domain 31 161 252.30 14 57.70 New ApeA N-terminal domain 1
ApeC PF16977 Family 32 188 191.00 25 31.79 Changed C-terminal domain of apextrin
Apelin PF15360 Family 8 32 54.70 64 68.07 Changed APJ endogenous ligand
APG12 PF04110 Family 6 967 83.50 41 56.31 Changed Ubiquitin-like autophagy protein Apg12
APG17 PF04108 Family 83 670 343.90 20 57.85 Changed Autophagy protein Apg17
APG5 PF04106 Family 151 1175 215.40 28 68.33 Changed Autophagy protein Apg5
APG6 PF04111 Domain 128 1306 173.90 43 37.46 Changed Apg6 BARA domain
APG6_N PF17675 Coiled-coil 132 1129 130.30 28 27.56 New Apg6 coiled-coil region
APG9 PF04109 Family 117 1364 405.60 34 55.19 Changed Autophagy protein Apg9
APH PF01636 Family 156 42203 228.80 12 61.34 Changed Phosphotransferase enzyme family
Aph-1 PF06105 Family 54 707 201.30 33 72.19 Changed Aph-1 protein
AphA_like PF14557 Domain 4 53 174.40 39 94.24 Changed Putative AphA-like transcriptional regulator
APH_6_hur PF04655 Family 6 1505 234.90 28 81.38 Changed Aminoglycoside/hydroxyurea antibiotic resistance kinase
API5 PF05918 Family 20 728 383.90 32 80.83 Changed Apoptosis inhibitory protein 5 (API5)
Apidaecin PF00807 Family 2 47 29.00 88 79.37 Changed Apidaecin
Apis_Csd PF11671 Family 5 21 108.50 51 29.76 Changed Complementary sex determiner protein
Apo-CII PF05355 Family 12 65 74.00 49 58.19 Changed Apolipoprotein C-II
Apo-CIII PF05778 Family 16 56 66.60 57 66.76 Changed Apolipoprotein CIII (Apo-CIII)
Apo-VLDL-II PF05418 Family 3 49 78.30 71 74.28 Changed Apovitellenin I (Apo-VLDL-II)
ApoA-II PF04711 Family 12 65 71.40 55 65.50 Changed Apolipoprotein A-II (ApoA-II)
ApoB100_C PF12491 Family 16 77 56.20 56 1.34 Changed Apolipoprotein B100 C terminal
APOBEC1 PF18769 Family 10 16 92.50 60 49.20 New APOBEC1
APOBEC2 PF18772 Family 45 198 168.00 51 69.97 New APOBEC2
APOBEC3 PF18771 Family 8 21 133.00 41 69.27 New APOBEC3
APOBEC4 PF18775 Family 13 52 74.00 47 63.70 New APOBEC4
APOBEC4_like PF18774 Family 6 33 128.50 51 65.73 New APOBEC4-like -AID/APOBEC-deaminase
APOBEC_C PF05240 Domain 80 87 76.10 37 34.63 Changed APOBEC-like C-terminal domain
APOBEC_N PF08210 Domain 26 135 190.70 34 37.31 Changed APOBEC-like N-terminal domain
ApoC-I PF04691 Family 11 66 52.60 53 58.79 Changed Apolipoprotein C-I (ApoC-1)
APOC4 PF15119 Family 13 44 84.70 56 65.09 Changed Apolipoprotein C4
Apocytochr_F_C PF01333 Domain 57 306 114.70 59 35.41 Changed Apocytochrome F, C-terminal
Apocytochr_F_N PF16639 Domain 29 367 132.90 63 44.14 Changed Apocytochrome F, N-terminal
ApoL PF05461 Family 40 727 220.30 23 58.15 Changed Apolipoprotein L
Apolipoprotein PF01442 Domain 117 4368 174.60 12 81.65 Changed Apolipoprotein A1/A4/E domain
Apolipo_F PF15148 Family 16 90 158.70 38 56.77 Changed Apolipoprotein F
ApoLp-III PF07464 Family 12 68 138.90 27 63.24 Changed Apolipophorin-III precursor (apoLp-III)
ApoM PF11032 Domain 2 127 162.20 32 77.86 Changed ApoM domain
ApoO PF09769 Family 115 1030 134.60 24 53.56 Changed Apolipoprotein O
APO_RNA-bind PF05634 Family 15 900 157.90 34 77.16 Changed APO RNA-binding
APP_amyloid PF10515 Family 20 777 51.50 61 7.44 Changed Beta-amyloid precursor protein C-terminus
APP_Cu_bd PF12924 Domain 30 747 57.00 58 8.14 Changed Copper-binding of amyloid precursor, CuBD
APP_E2 PF12925 Domain 20 819 176.60 52 25.87 Changed E2 domain of amyloid precursor protein
APP_N PF02177 Domain 25 784 96.40 54 14.19 Changed Amyloid A4 N-terminal heparin-binding
Apq12 PF12716 Family 66 290 53.20 30 30.22 Changed Nuclear pore assembly and biogenesis
APS-reductase_C PF12139 Family 14 244 80.00 47 52.84 Changed Adenosine-5'-phosphosulfate reductase beta subunit
APS_kinase PF01583 Domain 18 6885 152.60 46 39.80 Changed Adenylylsulphate kinase
APT PF03440 Domain 3 28 80.80 38 17.50 Changed Aerolysin/Pertussis toxin (APT) domain
Apt1 PF10351 Family 150 1372 421.90 23 19.83 Changed Golgi-body localisation protein domain
Apyrase PF06079 Family 55 657 244.60 41 69.06 Changed Apyrase
AP_endonuc_2 PF01261 Domain 180 35198 211.90 14 68.44 Changed Xylose isomerase-like TIM barrel
AP_endonuc_2_N PF07582 Family 121 3017 53.00 34 16.11 Changed AP endonuclease family 2 C terminus
Aquarius_N PF16399 Family 68 1245 570.60 32 50.66 Changed Intron-binding protein aquarius N-terminus
ARA70 PF12489 Family 33 307 133.70 33 42.18 Changed Nuclear coactivator
ArabFuran-catal PF09206 Domain 56 639 302.10 57 59.83 Changed Alpha-L-arabinofuranosidase B, catalytic
Arabinose_bd PF12625 Domain 104 6089 180.60 18 53.06 Changed Arabinose-binding domain of AraC transcription regulator, N-term
Arabinose_Isome PF02610 Family 147 1938 339.70 41 69.85 Changed L-arabinose isomerase
Arabinose_Iso_C PF11762 Domain 138 1524 113.40 49 23.16 Changed L-arabinose isomerase C-terminal domain
Arabinose_trans PF04602 Family 23 782 451.50 46 42.94 Changed Mycobacterial cell wall arabinan synthesis protein
Arabino_trans_C PF14896 Domain 65 823 340.90 38 34.48 Changed EmbC C-terminal domain
Arabino_trans_N PF17689 Domain 65 757 159.00 36 14.90 New Arabinosyltransferase concanavalin like domain
AraC_binding PF02311 Domain 58 19815 129.40 12 44.96 Changed AraC-like ligand binding domain
AraC_binding_2 PF14525 Domain 115 4247 174.30 14 52.51 Changed AraC-binding-like domain
AraC_N PF06719 Family 335 3145 151.40 27 50.40 Changed AraC-type transcriptional regulator N-terminus
ArAE_1 PF06081 Family 27 2259 141.30 24 42.18 Changed Aromatic acid exporter family member 1
ArAE_1_C PF11728 Domain 77 669 164.40 29 51.22 Changed Putative aromatic acid exporter C-terminal domain
ArAE_2 PF10334 Family 20 1015 212.30 18 20.45 Changed Aromatic acid exporter family member 2
ArAE_2_N PF10337 Family 15 1401 307.40 15 34.04 Changed Putative ER transporter, 6TM, N-terminal
Arb1 PF09692 Family 54 426 328.80 24 64.65 Changed Argonaute siRNA chaperone (ARC) complex subunit Arb1
Arb2 PF09757 Domain 47 664 235.10 24 35.80 Changed Arb2 domain
Arc PF03869 Domain 3 1097 46.10 27 51.16 Changed Arc-like DNA binding domain
Arcadin_1 PF18653 Domain 8 31 107.60 30 95.56 New Arcadin 1
Archaeal_AmoA PF12942 Family 2 17 172.60 87 85.42 Changed Archaeal ammonia monooxygenase subunit A (AmoA)
Archease PF01951 Domain 222 1386 133.60 28 78.36 Changed Archease protein family (MTH1598/TM1083)
Arch_flagellin PF01917 Family 43 867 172.50 19 87.31 Changed Archaebacterial flagellin
Arch_fla_DE PF04659 Family 54 220 92.90 30 25.71 Changed Archaeal flagella protein
Arc_C PF18162 Domain 3 84 82.90 89 20.91 New Arc C-lobe
Arc_PepC PF06819 Domain 9 57 106.90 28 30.22 Changed Archaeal Peptidase A24 C-terminal Domain
Arc_PepC_II PF06847 Domain 26 203 84.70 24 30.03 Changed Archaeal Peptidase A24 C-terminus Type II
Arc_trans_TRASH PF08394 Domain 7 115 36.40 32 21.30 Changed Archaeal TRASH domain
ARD PF03079 Domain 10 2407 149.20 30 77.28 Changed ARD/ARD' family
ArdA PF07275 Family 73 847 158.60 23 54.83 Changed Antirestriction protein (ArdA)
AreA_N PF07573 Family 5 58 80.90 48 9.20 Changed Nitrogen regulatory protein AreA N terminus
ArenaCapSnatch PF17296 Domain 3 13 171.50 38 7.87 Changed Arenavirus cap snatching domain
Arena_glycoprot PF00798 Family 3 12 403.40 40 98.55 Changed Arenavirus glycoprotein
Arena_ncap_C PF17290 Domain 3 13 180.20 43 31.61 Changed Arenavirus nucleocapsid C-terminal domain
Arena_nucleocap PF00843 Domain 3 13 332.20 44 58.26 Changed Arenavirus nucleocapsid N-terminal domain
Arena_RNA_pol PF06317 Family 3 16 1608.10 31 76.53 Changed Arenavirus RNA polymerase
Arf PF00025 Domain 20 16015 159.50 35 74.53 Changed ADP-ribosylation factor family
ARF7EP_C PF14949 Family 36 400 100.50 43 49.42 Changed ARF7 effector protein C-terminus
ArfA PF03889 Domain 67 371 41.60 50 62.21 Changed Alternative ribosome-rescue factor A
Arfaptin PF06456 Domain 11 1591 204.80 30 54.00 Changed Arfaptin-like domain
ArfGap PF01412 Domain 123 11266 114.10 32 18.35 Changed Putative GTPase activating protein for Arf
Arginase PF00491 Domain 235 13894 271.50 24 83.99 Changed Arginase family
Arginosuc_synth PF00764 Family 11 8220 375.50 40 92.60 Changed Arginosuccinate synthase
ArgJ PF01960 Family 738 5875 380.00 40 93.96 Changed ArgJ family
ARGLU PF15346 Family 24 580 141.80 43 56.42 Changed Arginine and glutamate-rich 1
ArgoL1 PF08699 Domain 256 4677 51.20 35 5.58 Changed Argonaute linker 1 domain
ArgoL2 PF16488 Family 380 4142 47.40 33 5.15 Changed Argonaute linker 2 domain
ArgoMid PF16487 Domain 34 2738 80.30 30 8.75 Changed Mid domain of argonaute
ArgoN PF16486 Domain 316 4373 138.20 25 15.08 Changed N-terminal domain of argonaute
Argos PF11581 Family 6 66 121.90 54 39.69 Changed Antagonist of EGFR signalling, Argos
Arg_decarbox_C PF17944 Domain 80 1469 51.80 32 8.20 New Arginine decarboxylase C-terminal helical extension
Arg_decarb_HB PF17810 Domain 68 1514 84.30 27 13.31 New Arginine decarboxylase helical bundle domain
Arg_repressor PF01316 Domain 9 3597 69.20 37 43.15 Changed Arginine repressor, DNA binding domain
Arg_repressor_C PF02863 Domain 422 3566 67.80 33 42.72 Changed Arginine repressor, C-terminal domain
Arg_tRNA_synt_N PF03485 Domain 119 9686 86.50 27 15.12 Changed Arginyl tRNA synthetase N terminal domain
ARHGEF5_35 PF15441 Family 14 48 418.30 45 30.88 Changed Rho guanine nucleotide exchange factor 5/35
ARID PF01388 Domain 432 6304 87.50 28 7.91 Changed ARID/BRIGHT DNA binding domain
Arif-1 PF06770 Family 1 26 170.90 30 52.12 Changed Actin-rearrangement-inducing factor (Arif-1)
ARL17 PF15840 Family 4 18 60.80 90 54.78 Changed ADP-ribosylation factor-like protein 17
ARL2_Bind_BART PF11527 Family 95 864 112.00 28 39.32 Changed The ARF-like 2 binding protein BART
ARL6IP6 PF15062 Family 8 131 76.90 42 37.49 Changed Haemopoietic lineage transmembrane helix
ArlS_N PF18719 Domain 89 368 135.20 18 28.00 New ArlS sensor domain
Arm PF00514 Repeat 197 43284 40.70 25 18.14 Changed Armadillo/beta-catenin-like repeat
Arm-DNA-bind_1 PF09003 Domain 11 145 69.10 33 19.90 Changed Bacteriophage lambda integrase, Arm DNA-binding domain
Arm-DNA-bind_2 PF12167 Domain 23 573 64.20 30 17.04 Changed Arm DNA-binding domain
Arm-DNA-bind_3 PF13356 Domain 570 6362 86.60 27 22.21 Changed Arm DNA-binding domain
Arm-DNA-bind_4 PF14657 Domain 51 1609 44.30 29 12.50 Changed Arm DNA-binding domain
Arm-DNA-bind_5 PF17293 Domain 180 3044 87.00 19 22.74 Changed Arm DNA-binding domain
Armet PF10208 Family 32 450 128.50 46 56.51 Changed Degradation arginine-rich protein for mis-folding
Arm_2 PF04826 Family 8 798 207.80 26 40.13 Changed Armadillo-like
Arm_3 PF16186 Family 162 2834 52.70 41 10.04 Changed Atypical Arm repeat
Arm_APC_u3 PF16629 Disordered 6 292 249.80 50 11.28 Changed Armadillo-associated region on APC
Arm_vescicular PF18770 Repeat 39 355 60.00 51 6.59 New Armadillo tether-repeat of vescicular transport factor
ArnB_C PF18677 Domain 15 29 79.20 42 20.87 New Archaellum regulatory network B, C-terminal domain
Arnt_C PF18583 Domain 52 242 104.30 34 18.64 New Aminoarabinose transferase C-terminal domain
AroM PF07302 Family 34 333 212.40 30 91.01 Changed AroM protein
Aromatic_hydrox PF11723 Domain 4 96 180.60 26 48.13 Changed Homotrimeric ring hydroxylase
AROS PF15684 Family 27 189 116.50 31 75.84 Changed Active regulator of SIRT1, or 40S ribosomal protein S19-binding 1
ARPC4 PF05856 Family 45 1114 153.30 66 84.71 Changed ARP2/3 complex 20 kDa subunit (ARPC4)
Arr-ms PF12120 Domain 42 617 97.40 61 64.54 Changed Rifampin ADP-ribosyl transferase
Arrestin_C PF02752 Domain 149 5867 149.90 17 29.84 Changed Arrestin (or S-antigen), C-terminal domain
Arrestin_N PF00339 Domain 26 6330 139.60 18 29.30 Changed Arrestin (or S-antigen), N-terminal domain
ARS2 PF04959 Family 9 1136 198.40 23 24.69 Changed Arsenite-resistance protein 2
ArsA_ATPase PF02374 Domain 10 7155 242.30 23 78.17 Changed Anion-transporting ATPase
ArsA_HSP20 PF17886 Domain 65 1733 65.50 29 19.76 New HSP20-like domain found in ArsA
ArsB PF02040 Family 1 2257 371.00 34 87.97 Changed Arsenical pump membrane protein
ArsC PF03960 Family 36 9557 105.40 20 85.18 Changed ArsC family
ArsD PF06953 Domain 54 647 116.30 35 91.88 Changed Arsenical resistance operon trans-acting repressor ArsD
ArsP_1 PF03773 Family 11 5151 280.30 21 84.84 Changed Predicted permease
ArsP_2 PF11449 Family 19 563 232.00 21 90.24 Changed Putative, 10TM heavy-metal exporter
ArsR PF09824 Family 32 75 158.10 38 94.07 Changed ArsR transcriptional regulator
ART PF01129 Family 8 821 201.20 27 53.50 Changed NAD:arginine ADP-ribosyltransferase
ART-PolyVal PF18760 Family 28 129 146.20 20 13.29 New ADP-Ribosyltransferase in polyvalent proteins
ARTD15_N PF18084 Domain 58 233 82.40 35 21.47 New ARTD15 N-terminal domain
Arteri_env PF01606 Family 3 6 169.00 36 73.48 Changed Arterivirus envelope protein
Arteri_Gl PF00951 Family 11 31 163.70 25 80.99 Changed Arterivirus GL envelope glycoprotein
Arteri_GP4 PF02497 Family 3 10 161.80 26 90.59 Changed Arterivirus glycoprotein
Arteri_nsp7a PF16749 Domain 7 22 129.00 41 4.52 Changed Arterivirus nonstructural protein 7 alpha
Arteri_nucleo PF01481 Family 4 17 108.80 22 89.89 Changed Arterivirus nucleocapsid protein
Arv1 PF04161 Family 81 1243 176.70 25 66.45 Changed Arv1-like family
Arylesterase PF01731 Family 6 604 84.90 33 23.13 Changed Arylesterase
Arylsulfotrans PF05935 Family 32 995 325.00 18 60.71 Changed Arylsulfotransferase (ASST)
Arylsulfotran_2 PF14269 Family 23 1942 272.80 25 50.87 Changed Arylsulfotransferase (ASST)
Arylsulfotran_N PF17425 Domain 33 397 86.60 27 15.14 Changed Arylsulfotransferase Ig-like domain
ASC PF00858 Family 415 6486 333.40 15 73.54 Changed Amiloride-sensitive sodium channel
ASCH PF04266 Domain 80 3344 111.00 17 53.18 Changed ASCH domain
ASD1 PF08688 Family 45 405 157.40 32 13.06 Changed Apx/Shroom domain ASD1
ASD2 PF08687 Family 60 749 242.60 39 22.57 Changed Apx/Shroom domain ASD2
ASF1_hist_chap PF04729 Family 84 1378 146.00 51 61.98 Changed ASF1 like histone chaperone
ASFV_360 PF01671 Family 5 7 191.00 47 60.88 Changed African swine fever virus multigene family 360 protein
ASFV_J13L PF05568 Family 2 8 101.50 14 20.38 Changed African swine fever virus J13L protein
ASFV_L11L PF05293 Family 2 0 0.00 0 0.00 Changed African swine fever virus (ASFV) L11L protein
ASFV_p27 PF06556 Family 1 1 131.00 100 58.48 Changed IAP-like protein p27 C-terminus
ASH PF15780 Domain 35 1350 94.10 19 6.61 Changed Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
Ashwin PF15323 Family 16 196 169.60 41 86.64 Changed Developmental protein
AsiA PF09010 Domain 2 41 80.80 40 88.37 Changed Anti-Sigma Factor A
ASL_C PF08328 Family 233 3198 115.20 52 25.25 Changed Adenylosuccinate lyase C-terminal
ASL_C2 PF14698 Domain 720 7436 69.90 38 14.85 Changed Argininosuccinate lyase C-terminal
AsmA PF05170 Family 9 4085 325.50 12 49.75 Changed AsmA family
AsmA_1 PF13109 Family 11 141 201.30 24 20.77 Changed AsmA-like C-terminal region
AsmA_2 PF13502 Family 71 4326 219.90 14 21.96 Changed AsmA-like C-terminal region
AsnA PF03590 Domain 169 1266 225.30 52 68.95 Changed Aspartate-ammonia ligase
AsnC_trans_reg PF01037 Domain 237 33553 73.00 21 47.37 Changed Lrp/AsnC ligand binding domain
AsnC_trans_reg2 PF17805 Domain 91 2011 84.30 28 49.89 New AsnC-like ligand binding domain
Asn_synthase PF00733 Domain 78 17022 263.40 20 56.15 Changed Asparagine synthase
Asp PF00026 Family 24 15592 283.80 21 68.02 Changed Eukaryotic aspartyl protease
Asp-Al_Ex PF06826 Family 31 3938 168.20 27 62.13 Changed Predicted Permease Membrane Region
Asp-B-Hydro_N PF05279 Family 9 434 186.90 36 41.58 Changed Aspartyl beta-hydroxylase N-terminal region
Asp1 PF16993 Family 3 172 403.90 18 85.39 Changed Accessory Sec system protein Asp1
Asp2 PF16929 Family 11 154 408.50 26 87.41 Changed Accessory Sec system GspB-transporter
Asp23 PF03780 Family 140 5649 105.30 29 73.32 Changed Asp23 family, cell envelope-related function
Asp4 PF16996 Family 1 8 53.60 58 90.89 Changed Accessory secretory protein Sec Asp4
Asp5 PF17000 Family 5 8 70.90 40 95.62 Changed Accessory secretory protein Sec, Asp5
Asparaginase PF00710 Domain 119 7546 189.90 29 52.65 Changed Asparaginase, N-terminal
Asparaginase_2 PF01112 Domain 53 6221 257.80 27 80.97 Changed Asparaginase
Asparaginase_C PF17763 Domain 365 6689 114.10 26 30.18 New Glutaminase/Asparaginase C-terminal domain
Asparaginase_II PF06089 Family 215 2155 309.40 37 93.59 Changed L-asparaginase II
ASPRs PF17641 Family 43 293 109.50 18 72.06 Changed Ancylostoma-associated secreted protein related
Aspzincin_M35 PF14521 Domain 59 836 133.40 25 36.65 Changed Lysine-specific metallo-endopeptidase
Asp_Arg_Hydrox PF05118 Domain 128 2453 151.90 26 40.92 Changed Aspartyl/Asparaginyl beta-hydroxylase
Asp_decarbox PF02261 Domain 389 4293 114.10 51 88.99 Changed Aspartate decarboxylase
Asp_Glu_race PF01177 Family 45 12240 210.90 21 81.37 Changed Asp/Glu/Hydantoin racemase
Asp_Glu_race_2 PF14669 Family 10 97 164.30 57 12.26 Changed Putative aspartate racemase
Asp_protease PF09668 Family 10 1379 116.10 42 29.38 Changed Aspartyl protease
Asp_protease_2 PF13650 Domain 147 5681 92.20 16 24.20 Changed Aspartyl protease
Asr PF06392 Repeat 2 8 19.90 83 16.41 Changed Acid shock protein repeat
ASRT PF07100 Family 31 231 116.70 45 92.71 Changed Anabaena sensory rhodopsin transducer
AstA PF04958 Domain 97 1472 331.70 40 97.71 Changed Arginine N-succinyltransferase beta subunit
Astacin PF01400 Domain 22 8275 165.30 27 37.76 Changed Astacin (Peptidase family M12A)
AstB PF04996 Family 57 903 427.50 54 99.06 Changed Succinylarginine dihydrolase
AstE_AspA PF04952 Domain 31 6285 253.30 19 77.75 Changed Succinylglutamate desuccinylase / Aspartoacylase family
ASTN_2_hairpin PF18577 Domain 7 132 46.60 77 5.17 New Astrotactin-2 C-terminal beta-hairpin domain
Astro_capsid_N PF03115 Family 2 3 385.30 23 55.39 Changed Astrovirus capsid protein precursor
Astro_capsid_p PF12226 Family 13 4 186.20 14 38.68 Changed Turkey astrovirus capsid protein
Astro_capsid_p2 PF16580 Domain 9 0 0.00 0 0.00 Changed C-terminal tail of astrovirus capsid projection or spike
ASXH PF13919 Domain 66 1076 128.70 28 14.03 Changed Asx homology domain
ATAD4 PF15321 Family 36 153 86.20 47 73.99 Changed ATPase family AAA domain containing 4
ATC_hydrolase PF14196 Family 75 932 141.20 16 71.86 Changed L-2-amino-thiazoline-4-carboxylic acid hydrolase
ATE_C PF04377 Family 364 3605 129.10 35 39.87 Changed Arginine-tRNA-protein transferase, C terminus
ATE_N PF04376 Family 290 3331 70.80 34 21.56 Changed Arginine-tRNA-protein transferase, N terminus
ATF7IP_BD PF16788 Family 29 243 187.70 38 22.60 Changed ATF-interacting protein binding domain
ATG101 PF07855 Family 107 1009 158.20 29 69.65 Changed Autophagy-related protein 101
ATG11 PF10377 Family 76 1143 136.20 28 11.70 Changed Autophagy-related protein 11
ATG13 PF10033 Family 105 1223 183.00 25 28.32 Changed Autophagy-related protein 13
Atg14 PF10186 Family 28 1643 291.20 17 53.84 Changed Vacuolar sorting 38 and autophagy-related subunit 14
ATG16 PF08614 Coiled-coil 111 1133 172.20 24 43.75 Changed Autophagy protein 16 (ATG16)
ATG19_autophagy PF12744 Domain 7 40 227.10 23 47.51 Changed Autophagy protein Atg19, Atg8-binding
ATG22 PF11700 Family 35 5172 357.60 21 85.24 Changed Vacuole effluxer Atg22 like
ATG27 PF09451 Family 94 902 258.80 21 79.44 Changed Autophagy-related protein 27
Atg29_N PF18388 Domain 64 372 52.80 45 12.11 New Atg29 N-terminal domain
ATG2_CAD PF13329 Family 95 620 146.90 23 7.52 Changed Autophagy-related protein 2 CAD motif
Atg31 PF09795 Family 12 34 164.70 37 96.90 Changed Autophagy-related protein 31
ATG7_N PF16420 Domain 142 1294 278.90 27 42.78 Changed Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
Atg8 PF02991 Domain 9 2750 100.00 50 67.43 Changed Autophagy protein Atg8 ubiquitin like
ATG_C PF09333 Family 116 1751 93.50 29 4.22 Changed Autophagy-related protein C terminal domain
ATHILA PF03078 Family 11 157 212.20 18 53.54 Changed ATHILA ORF-1 family
ATLF PF07737 Domain 3 29 124.50 24 43.57 Changed Anthrax toxin lethal factor, N- and C-terminal domain
ATP-cone PF03477 Domain 129 14545 89.00 24 19.19 Changed ATP cone domain
ATP-grasp PF02222 Family 20 8633 171.00 32 42.63 Changed ATP-grasp domain
ATP-grasp_2 PF08442 Domain 20 9034 197.70 37 47.15 Changed ATP-grasp domain
ATP-grasp_3 PF02655 Family 15 2030 171.30 17 42.26 Changed ATP-grasp domain
ATP-grasp_4 PF13535 Domain 18 3423 149.60 22 32.82 Changed ATP-grasp domain
ATP-grasp_5 PF13549 Domain 170 5537 213.30 31 28.68 Changed ATP-grasp domain
ATP-grasp_6 PF18419 Domain 36 294 54.00 52 7.80 New ATP-grasp-like domain
ATP-gua_Ptrans PF00217 Domain 61 2509 196.70 35 50.02 Changed ATP:guanido phosphotransferase, C-terminal catalytic domain
ATP-gua_PtransN PF02807 Domain 106 1412 67.20 46 15.74 Changed ATP:guanido phosphotransferase, N-terminal domain
ATP-sulfurylase PF01747 Domain 185 3174 210.50 40 42.60 Changed ATP-sulfurylase
ATP-synt PF00231 Domain 1029 9662 280.80 32 95.65 Changed ATP synthase
ATP-synt_10 PF05176 Family 42 790 223.60 27 74.97 Changed ATP10 protein
ATP-synt_8 PF00895 Family 19 72 53.90 32 90.59 Changed ATP synthase protein 8
ATP-synt_A PF00119 Domain 699 8328 212.10 28 79.87 Changed ATP synthase A chain
ATP-synt_ab PF00006 Domain 495 36428 213.90 34 43.47 Changed ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C PF00306 Domain 240 9360 124.20 42 24.25 Changed ATP synthase alpha/beta chain, C terminal domain
ATP-synt_ab_N PF02874 Domain 128 25579 67.60 27 13.45 Changed ATP synthase alpha/beta family, beta-barrel domain
ATP-synt_ab_Xtn PF16886 Family 424 2868 119.70 42 19.59 Changed ATPsynthase alpha/beta subunit N-term extension
ATP-synt_B PF00430 Family 14 9730 131.00 24 72.98 Changed ATP synthase B/B' CF(0)
ATP-synt_C PF00137 Family 1075 18583 61.60 28 66.32 Changed ATP synthase subunit C
ATP-synt_D PF01813 Family 312 2963 184.50 32 81.82 Changed ATP synthase subunit D
ATP-synt_DE PF00401 Domain 393 3387 46.50 35 32.89 Changed ATP synthase, Delta/Epsilon chain, long alpha-helix domain
ATP-synt_DE_N PF02823 Domain 225 9327 80.00 29 59.13 Changed ATP synthase, Delta/Epsilon chain, beta-sandwich domain
ATP-synt_E PF05680 Family 16 842 82.40 27 76.52 Changed ATP synthase E chain
ATP-synt_Eps PF04627 Family 111 1008 47.80 40 37.84 Changed Mitochondrial ATP synthase epsilon chain
ATP-synt_E_2 PF08112 Family 2 7 49.70 42 58.98 Changed ATP synthase epsilon subunit
ATP-synt_F PF01990 Family 314 2414 95.00 30 80.35 Changed ATP synthase (F/14-kDa) subunit
ATP-synt_F6 PF05511 Family 20 379 91.60 37 11.06 Changed Mitochondrial ATP synthase coupling factor 6
ATP-synt_G PF04718 Family 126 1160 98.70 28 60.47 Changed Mitochondrial ATP synthase g subunit
ATP-synt_I PF03899 Family 95 2268 96.90 18 73.13 Changed ATP synthase I chain
ATP-synt_J PF04911 Family 58 380 49.60 44 71.35 Changed ATP synthase j chain
ATP-synt_S1 PF05827 Family 34 569 144.80 31 36.78 Changed Vacuolar ATP synthase subunit S1 (ATP6S1)
ATP-synt_Z PF16594 Family 11 105 51.50 50 43.74 Changed Putative AtpZ or ATP-synthase-associated
ATP11 PF06644 Family 129 1032 237.00 28 79.24 Changed ATP11 protein
ATP12 PF07542 Family 245 2029 123.30 34 40.23 Changed ATP12 chaperone protein
ATP13 PF12921 Family 36 302 118.00 26 17.69 Changed Mitochondrial ATPase expression
ATP19 PF11022 Family 78 524 67.20 37 78.09 Changed ATP synthase subunit K
ATP1G1_PLM_MAT8 PF02038 Family 29 483 46.10 47 36.70 Changed ATP1G1/PLM/MAT8 family
ATPase PF06745 Domain 26 5118 211.20 23 75.92 Changed KaiC
ATPase-cat_bd PF12156 Family 87 1415 79.10 30 9.99 Changed Putative metal-binding domain of cation transport ATPase
ATPase_2 PF01637 Domain 29 1918 210.90 20 49.72 Changed ATPase domain predominantly from Archaea
ATPase_gene1 PF09527 Family 388 3314 53.50 24 56.07 Changed Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
ATPgrasp_N PF18130 Domain 20 1018 80.60 22 15.15 New ATP-grasp N-terminal domain
ATPgrasp_ST PF14397 Family 21 1265 259.70 27 70.83 Changed Sugar-transfer associated ATP-grasp
ATPgrasp_Ter PF15632 Domain 30 1136 133.90 21 34.01 Changed ATP-grasp in the biosynthetic pathway with Ter operon
ATPgrasp_TupA PF14305 Family 5 833 232.70 27 72.78 Changed TupA-like ATPgrasp
ATPgrasp_YheCD PF14398 Family 103 1876 249.80 25 66.47 Changed YheC/D like ATP-grasp
AtpR PF12966 Family 25 433 84.10 26 74.05 Changed N-ATPase, AtpR subunit
ATP_bind_1 PF03029 Domain 30 7738 197.00 27 74.70 Changed Conserved hypothetical ATP binding protein
ATP_bind_2 PF03668 Domain 4 5364 270.70 39 91.31 Changed P-loop ATPase protein family
ATP_bind_3 PF01171 Family 28 13285 176.90 25 45.77 Changed PP-loop family
ATP_Ca_trans_C PF12424 Family 15 1245 45.80 48 4.73 Changed Plasma membrane calcium transporter ATPase C terminal
ATP_sub_h PF10775 Family 77 527 67.80 45 52.52 Changed ATP synthase complex subunit h
ATP_synth_reg PF14960 Family 18 207 47.00 46 57.42 Changed ATP synthase regulation
ATP_synt_H PF05493 Family 124 972 61.70 35 65.80 Changed ATP synthase subunit H
ATP_transf PF09830 Family 226 1006 65.00 31 19.32 Changed ATP adenylyltransferase
ATR13 PF16829 Family 3 2 62.50 17 66.84 Changed Avirulence protein ATR13, RxLR effector
Atracotoxin PF05353 Family 5 0 0.00 0 0.00 Changed Delta Atracotoxin
Atrophin-1 PF03154 Family 6 625 496.90 30 52.12 Changed Atrophin-1 family
ATS PF15445 Domain 24 1042 288.00 44 22.67 Changed acidic terminal segments, variant surface antigen of PfEMP1
ATS3 PF06232 Domain 8 355 122.80 40 66.73 Changed Embryo-specific protein 3, (ATS3)
Attachment_P66 PF11263 Family 3 4 237.50 58 44.64 Changed Borrelia burgdorferi attachment protein P66
Attacin_C PF03769 Family 17 181 104.00 30 52.60 Changed Attacin, C-terminal region
Attacin_N PF03768 Family 13 90 65.30 41 29.79 Changed Attacin, N-terminal region
Atthog PF18800 Family 12 251 130.20 62 72.04 New Attenuator of Hedgehog
Attractin PF08037 Family 2 0 0.00 0 0.00 Changed Attractin family
Atu4866 PF11512 Family 20 372 74.10 60 62.97 Changed Agrobacterium tumefaciens protein Atu4866
AtuA PF07287 Family 206 3340 323.10 31 60.90 Changed Acyclic terpene utilisation family protein AtuA
Atx10homo_assoc PF09759 Domain 88 999 93.00 29 14.58 Changed Spinocerebellar ataxia type 10 protein domain
ATXN-1_C PF12547 Family 6 98 38.40 75 4.96 Changed Capicua transcriptional repressor modulator
ATX_III PF08098 Family 2 0 0.00 0 0.00 Changed Anemonia sulcata toxin III family
Atypical_Card PF18461 Domain 20 94 94.50 51 5.58 New Atypical caspase recruitment domain
AT_hook PF02178 Motif 39 3710 12.60 52 9.58 Changed AT hook motif
AUDH_Cupin PF18637 Domain 19 56 139.90 39 22.55 New Aldos-2-ulose dehydratase/isomerase (AUDH) Cupin domain
Augurin PF15187 Family 11 129 108.70 66 81.46 Changed Oesophageal cancer-related gene 4
AurF PF11583 Domain 81 1769 273.30 24 84.58 Changed P-aminobenzoate N-oxygenase AurF
Aurora-A_bind PF09041 Domain 12 130 63.00 51 8.77 Changed Aurora-A binding
Autoind_bind PF03472 Domain 100 3014 143.50 16 59.31 Changed Autoinducer binding domain
Autoind_synth PF00765 Family 4 1307 174.60 24 82.10 Changed Autoinducer synthase
Autophagy_act_C PF03987 Domain 215 2007 65.50 35 22.32 Changed Autophagocytosis associated protein, active-site domain
Autophagy_C PF10381 Domain 42 1071 24.80 66 7.26 Changed Autophagocytosis associated protein C-terminal
Autophagy_N PF03986 Domain 104 1187 155.40 34 46.35 Changed Autophagocytosis associated protein (Atg3), N-terminal domain
Autotransporter PF03797 Domain 735 5464 237.70 15 26.47 Changed Autotransporter beta-domain
Auto_anti-p27 PF06677 Family 122 890 40.10 37 18.99 Changed Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
Auts2 PF15336 Family 21 620 186.30 46 19.70 Changed Autism susceptibility gene 2 protein
Auxin_BP PF02041 Domain 3 179 142.80 52 74.63 Changed Auxin binding protein
Auxin_canalis PF05703 Family 45 994 200.40 35 56.82 Changed Auxin canalisation
Auxin_inducible PF02519 Family 147 6795 95.90 31 76.27 Changed Auxin responsive protein
Auxin_repressed PF05564 Family 12 564 108.00 32 82.85 Changed Dormancy/auxin associated protein
Auxin_resp PF06507 Family 93 3173 81.40 48 10.68 Changed Auxin response factor
AUX_IAA PF02309 Family 102 5307 151.20 29 36.43 Changed AUX/IAA family
AveC_like PF17198 Family 18 361 225.60 29 67.56 Changed Spirocyclase AveC-like
Avian_gp85 PF03708 Family 1 7 109.90 36 18.00 Changed Avian retrovirus envelope protein, gp85
Avidin PF01382 Domain 39 394 108.50 31 61.32 Changed Avidin family
AviRa PF11599 Family 15 58 216.90 37 89.44 Changed RRNA methyltransferase AviRa
Avl9 PF09794 Family 21 1325 309.00 29 47.65 Changed Transport protein Avl9
AvrB_AvrC PF05394 Family 6 29 165.70 20 42.12 Changed Avirulence protein
AvrD PF05655 Family 6 100 258.10 24 95.97 Changed Pseudomonas avirulence D protein (AvrD)
AvrE_T3Es PF11725 Family 2 60 1007.30 20 92.36 Changed AvrE-family Type-III effector proteins (T3Es)
AvrL567-A PF11529 Family 3 1 126.00 100 83.44 Changed Melampsora lini avirulence protein AvrL567-A
AvrLm4-7 PF18661 Domain 16 27 89.80 26 68.80 New Avirulence Effector AvrLm4-7
AvrM-A PF18241 Domain 4 8 148.00 33 27.27 New Flax-rust effector AvrM-A
AvrM_N PF18247 Domain 4 6 63.50 37 11.75 New Flax-rust effector AvrM N-terminal domain
AvrPphF-ORF-2 PF09143 Domain 4 12 149.10 32 70.13 Changed AvrPphF-ORF-2
AvrPto PF11592 Family 1 2 105.00 35 67.96 Changed Central core of the bacterial effector protein AvrPto
AvrPtoB-E3_ubiq PF09046 Domain 1 3 125.70 72 35.27 Changed AvrPtoB E3 ubiquitin ligase
AvrPtoB_bdg PF16847 Domain 1 3 88.00 61 24.70 Changed Avirulence AvrPtoB, BAK1-binding domain
AvrRpt-cleavage PF05627 Domain 18 1111 36.00 50 22.36 Changed Cleavage site for pathogenic type III effector avirulence factor Avr
Av_adeno_fibre PF06536 Family 6 64 54.10 30 21.13 Changed Avian adenovirus fibre, N-terminal
AWPM-19 PF05512 Family 37 518 126.20 47 77.79 Changed AWPM-19-like family
AWS PF17907 Domain 10 2368 38.50 43 2.95 New AWS domain
AXE1 PF05448 Domain 9 2208 253.80 25 66.45 Changed Acetyl xylan esterase (AXE1)
AXH PF08517 Family 49 574 115.30 43 20.04 Changed Ataxin-1 and HBP1 module (AXH)
AXIN1_TNKS_BD PF16646 Domain 24 298 70.60 58 9.20 Changed Axin-1 tankyrase binding domain
Axin_b-cat_bind PF08833 Domain 8 459 44.40 44 5.64 Changed Axin beta-catenin binding domain
Ax_dynein_light PF10211 Family 88 798 176.40 35 44.78 Changed Axonemal dynein light chain
AzlC PF03591 Family 687 5374 139.70 26 58.28 Changed AzlC protein
AzlD PF05437 Family 155 5430 96.40 21 90.70 Changed Branched-chain amino acid transport protein (AzlD)
AZUL PF16558 Domain 75 956 56.60 35 6.01 Changed Amino-terminal Zinc-binding domain of ubiquitin ligase E3A
A_amylase_inhib PF01356 Domain 6 46 68.20 35 62.26 Changed Alpha amylase inhibitor
A_deamin PF02137 Family 98 2269 277.50 26 54.60 Changed Adenosine-deaminase (editase) domain
A_deaminase PF00962 Domain 12 11249 312.80 22 70.54 Changed Adenosine/AMP deaminase
A_deaminase_N PF08451 Family 19 450 90.00 28 17.79 Changed Adenosine/AMP deaminase N-terminal
a_DG1_N2 PF18424 Domain 5 192 123.50 49 13.68 New Alpha-Dystroglycan N-terminal domain 2
A_thal_3526 PF09713 Domain 49 957 51.50 55 20.46 Changed Plant protein 1589 of unknown function (A_thal_3526)
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