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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
H-kinase_dim PF02895 Domain 66 1212 74.00 30 8.97 Changed Signal transducing histidine kinase, homodimeric domain
H-K_ATPase_N PF09040 Domain 2 40 40.80 80 4.09 Changed Gastric H+/K+-ATPase, N terminal domain
H2TH PF06831 Domain 14 2023 90.30 29 29.48 Changed Formamidopyrimidine-DNA glycosylase H2TH domain
HA PF03457 Domain 426 1020 65.20 27 32.25 Changed Helicase associated domain
HA2 PF04408 Domain 449 5890 97.30 30 9.56 Changed Helicase associated domain (HA2)
HABP4_PAI-RBP1 PF04774 Family 86 589 100.90 25 28.33 Changed Hyaluronan / mRNA binding family
HAD PF12710 Family 108 3231 177.80 18 56.35 Changed haloacid dehalogenase-like hydrolase
HAD_2 PF13419 Family 51 13118 176.30 17 70.30 Changed Haloacid dehalogenase-like hydrolase
Haemadin PF09065 Domain 2 0 0.00 0 0.00 Changed Haemadin
Haemagg_act PF05860 Domain 43 814 121.30 27 6.81 Changed haemagglutination activity domain
Haemocyan_bet_s PF14830 Family 27 1 104.00 100 12.53 Changed Haemocyanin beta-sandwich
Haemolytic PF01809 Family 820 1410 66.50 45 72.91 Changed Haemolytic domain
Haem_bd PF14376 Family 113 173 128.50 27 48.95 Changed Haem-binding domain
Haem_degrading PF03928 Family 595 1079 128.00 25 74.61 Changed Haem-degrading
Haem_oxygenas_2 PF14518 Family 147 484 175.80 17 47.82 Changed Iron-containing redox enzyme
HAGH_C PF16123 Family 525 1125 82.50 34 28.75 Changed Hydroxyacylglutathione hydrolase C-terminus
Hairpins PF04877 Family 11 19 191.50 17 77.87 Changed HrpZ
Hairy_orange PF07527 Domain 124 985 40.20 33 13.86 Changed Hairy Orange
Halogen_Hydrol PF10112 Family 36 196 210.00 18 71.19 Changed 5-bromo-4-chloroindolyl phosphate hydrolysis protein
Halo_GVPC PF05465 Repeat 27 31 31.70 32 42.94 Changed Halobacterial gas vesicle protein C (GVPC) repeat
HalX PF08663 Domain 45 72 67.20 28 31.67 Changed HalX domain
HALZ PF02183 Family 129 804 39.20 43 14.23 Changed Homeobox associated leucine zipper
Ham1p_like PF01725 Domain 1300 2223 183.70 34 89.31 Changed Ham1 family
Hamartin PF04388 Family 28 281 502.70 25 59.85 Changed Hamartin protein
HAMP PF00672 Family 213 20584 70.80 20 11.90 Changed HAMP domain
HAND PF09110 Domain 111 534 99.70 41 9.84 Changed HAND
Hanta_G1 PF01567 Family 1 1 523.00 100 46.08 Changed Hantavirus glycoprotein G1
Hanta_G2 PF01561 Family 6 1 486.00 100 42.82 Changed Hantavirus glycoprotein G2
Hanta_nucleocap PF00846 Family 1 1 429.00 100 100.00 Changed Hantavirus nucleocapsid protein
HAP PF03866 Family 2 0 0.00 0 0.00 Changed Hydrophobic abundant protein (HAP)
HAP1_N PF04849 Family 30 360 222.30 37 33.52 Changed HAP1 N-terminal conserved region
HAP2-GCS1 PF10699 Domain 44 133 47.60 41 6.73 Changed Male gamete fusion factor
Hap4_Hap_bind PF10297 Motif 15 202 16.70 79 3.12 Changed Minimal binding motif of Hap4 for binding to Hap2/3/5
HapK PF11639 Family 2 10 101.80 31 98.07 Changed REDY-like protein HapK
Harakiri PF15196 Family 2 16 88.60 90 100.00 Changed Activator of apoptosis harakiri
HARE-HTH PF05066 Family 43 486 68.80 29 8.34 Changed HB1, ASXL, restriction endonuclease HTH domain
HARP PF07443 Family 70 188 54.40 43 11.15 Changed HepA-related protein (HARP)
HAS-barrel PF09378 Domain 38 135 97.00 20 19.97 Changed HAS barrel domain
HasA PF06438 Domain 6 11 196.70 27 72.91 Changed Heme-binding protein A (HasA)
HAT PF02184 Family 3 570 32.10 47 6.74 Changed HAT (Half-A-TPR) repeat
Hat1_N PF10394 Domain 182 401 157.50 28 35.03 Changed Histone acetyl transferase HAT1 N-terminus
HATPase_c PF02518 Domain 658 55059 117.80 24 17.65 Changed Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_2 PF13581 Domain 78 3331 121.00 20 39.23 Changed Histidine kinase-like ATPase domain
HATPase_c_3 PF13589 Domain 24 4535 129.10 24 17.94 Changed Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_4 PF13749 Domain 89 842 85.80 25 18.77 Changed Putative ATP-dependent DNA helicase recG C-terminal
HATPase_c_5 PF14501 Domain 41 1067 102.90 22 25.40 Changed GHKL domain
HAT_KAT11 PF08214 Domain 25 672 295.00 30 21.68 Changed Histone acetylation protein
HAUS-augmin3 PF14932 Family 45 168 232.60 28 43.01 Changed HAUS augmin-like complex subunit 3
HAUS2 PF15003 Family 7 131 163.20 37 71.25 Changed HAUS augmin-like complex subunit 2
HAUS4 PF14735 Family 23 141 205.80 31 60.06 Changed HAUS augmin-like complex subunit 4
HAUS5 PF14817 Family 25 144 482.20 26 88.93 Changed HAUS augmin-like complex subunit 5
HAUS6_N PF14661 Family 58 273 219.40 22 31.33 Changed HAUS augmin-like complex subunit 6 N-terminus
HAV_VP PF12944 Domain 2 2 165.50 48 7.59 Changed Hepatitis A virus viral protein VP
HBB PF06777 Domain 39 492 144.30 40 19.21 Changed Helical and beta-bridge domain
HBM PF16591 Family 15 115 224.30 15 35.84 Changed Helical bimodular sensor domain
HbrB PF08539 Domain 80 325 134.80 31 23.31 Changed HbrB-like
HBS1_N PF08938 Domain 103 295 85.80 23 12.59 Changed HBS1 N-terminus
Hc1 PF07432 Family 4 81 63.40 41 91.22 Changed Histone H1-like protein Hc1
HC2 PF07382 Family 8 111 153.30 39 42.67 Changed Histone H1-like nucleoprotein HC2
HCaRG PF07258 Family 265 1120 158.40 16 80.37 Changed HCaRG protein
HCBP_related PF06594 Domain 165 404 42.00 28 8.56 Changed Haemolysin-type calcium binding protein related domain
Hce2 PF14856 Family 98 188 101.70 26 20.12 Changed Pathogen effector; putative necrosis-inducing factor
HCMVantigenic_N PF12154 Family 3 1 36.00 100 3.97 Changed Glycoprotein B N-terminal antigenic domain of HCMV
HCMV_UL139 PF12507 Family 8 25 123.00 44 54.77 Changed Human Cytomegalovirus UL139 protein
HCNGP PF07818 Family 103 362 94.70 34 31.72 Changed HCNGP-like protein
HCO3_cotransp PF00955 Family 92 2655 292.80 25 53.15 Changed HCO3- transporter family
HCR PF07111 Coiled-coil 3 111 414.30 47 89.29 Changed Alpha helical coiled-coil rod protein (HCR)
HCV_capsid PF01543 Family 5 2 120.50 12 7.60 Changed Hepatitis C virus capsid protein
HCV_core PF01542 Family 1 1 75.00 100 2.49 Changed Hepatitis C virus core protein
HCV_env PF01539 Family 4 1 190.00 100 6.31 Changed Hepatitis C virus envelope glycoprotein E1
HCV_NS1 PF01560 Family 10 1 344.00 100 11.42 Changed Hepatitis C virus non-structural protein E2/NS1
HCV_NS2 PF01538 Family 29 2 196.00 22 6.56 Changed Hepatitis C virus non-structural protein NS2
HCV_NS4a PF01006 Family 15 3 62.30 20 2.56 Changed Hepatitis C virus non-structural protein NS4a
HCV_NS4b PF01001 Family 11 2 192.00 22 6.42 Changed Hepatitis C virus non-structural protein NS4b
HCV_NS5a PF01506 Family 19 2 23.00 22 0.77 Changed Hepatitis C virus non-structural 5a protein membrane anchor
HCV_NS5a_1a PF08300 Domain 1 2 56.50 31 1.89 Changed Hepatitis C virus non-structural 5a zinc finger domain
HCV_NS5a_1b PF08301 Domain 20 2 100.00 17 3.35 Changed Hepatitis C virus non-structural 5a domain 1b
HCV_NS5a_C PF12941 Family 1 1 242.00 100 8.04 Changed HCV NS5a protein C-terminal region
HcyBio PF01837 Domain 100 204 355.10 44 85.00 Changed Homocysteine biosynthesis enzyme, sulfur-incorporation
HD PF01966 Family 154 11487 122.70 17 29.45 Changed HD domain
HD-ZIP_N PF04618 Domain 24 101 103.50 41 36.18 Changed HD-ZIP protein N terminus
HDA2-3 PF11496 Domain 22 130 278.10 24 33.66 Changed Class II histone deacetylase complex subunits 2 and 3
HDAC4_Gln PF12203 Domain 11 222 88.40 67 9.59 Changed Glutamine rich N terminal domain of histone deacetylase 4
HDC PF02329 Domain 5 14 268.60 38 90.82 Changed Histidine carboxylase PI chain
HdeA PF06411 Domain 30 60 89.30 20 83.24 Changed HdeA/HdeB family
hDGE_amylase PF14701 Domain 60 402 371.50 38 28.39 Changed Glucanotransferase of human glycogen debranching enzyme
HDNR PF15115 Family 16 93 156.30 34 83.78 Changed Domain of unknown function with conserved HDNR motif
HDOD PF08668 Domain 53 1568 177.50 20 46.77 Changed HDOD domain
HDPD PF02924 Domain 70 91 130.50 25 88.15 Changed Bacteriophage lambda head decoration protein D
HDV_ag PF01517 Family 1 2 195.00 100 95.35 Changed Hepatitis delta virus delta antigen
HD_2 PF12917 Family 2 80 200.80 38 91.87 Changed HD containing hydrolase-like enzyme
HD_3 PF13023 Domain 87 1214 157.40 25 69.34 Changed HD domain
HD_4 PF13328 Family 64 2784 147.00 36 23.90 Changed HD domain
HD_5 PF13487 Domain 45 1740 63.70 33 13.53 Changed HD domain
HD_assoc PF13286 Domain 175 1117 92.00 22 23.00 Changed Phosphohydrolase-associated domain
Head-tail_con PF12236 Family 40 65 453.60 24 84.56 Changed Bacteriophage head to tail connecting protein
Headcase PF16002 Family 14 145 172.20 49 40.96 Changed Headcase protein
Head_binding PF09008 Domain 4 12 110.10 44 16.87 Changed Head binding
HEAT PF02985 Repeat 446 2031 30.60 27 3.31 Changed HEAT repeat
HEAT_2 PF13646 Family 141 7642 87.20 21 25.88 Changed HEAT repeats
HEAT_EZ PF13513 Repeat 147 1607 55.40 31 5.41 Changed HEAT-like repeat
HEAT_PBS PF03130 Repeat 221 353 27.20 31 10.35 Changed PBS lyase HEAT-like repeat
HECA PF15353 Family 19 127 97.30 55 19.84 Changed Headcase protein family homologue
HECT PF00632 Domain 88 5449 294.30 28 20.47 Changed HECT-domain (ubiquitin-transferase)
HECT_2 PF09814 Family 102 404 325.80 17 76.51 Changed HECT-like Ubiquitin-conjugating enzyme (E2)-binding
HECW_N PF16562 Domain 14 143 111.80 68 8.50 Changed N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
hEGF PF12661 Domain 442 6458 13.00 50 2.06 Changed Human growth factor-like EGF
HeH PF12949 Domain 40 225 34.70 43 5.24 Changed HeH/LEM domain
Helicase_C PF00271 Family 423 56017 117.60 20 13.06 Changed Helicase conserved C-terminal domain
Helicase_C_2 PF13307 Domain 102 2749 171.00 25 21.70 Changed Helicase C-terminal domain
Helicase_C_3 PF13625 Domain 127 871 124.90 33 17.35 Changed Helicase conserved C-terminal domain
Helicase_C_4 PF13871 Domain 73 465 249.90 47 21.31 Changed C-terminal domain on Strawberry notch homologue
Helicase_IV_N PF12462 Family 34 67 164.20 37 23.07 Changed DNA helicase IV / RNA helicase N terminal
Helicase_RecD PF05127 Domain 100 643 190.10 46 20.80 Changed Helicase
Helicase_Sgs1 PF11408 Family 5 26 80.00 34 5.94 Changed Sgs1 RecQ helicase
Helitron_like_N PF14214 Family 145 1445 146.60 24 17.24 Changed Helitron helicase-like domain at N-terminus
HeLo PF14479 Domain 100 410 190.90 17 32.56 Changed Prion-inhibition and propagation
Helo_like_N PF17111 Family 33 422 170.60 16 30.17 Changed Fungal N-terminal domain of STAND proteins
HELP PF03451 Family 58 907 66.90 40 8.50 Changed HELP motif
HEM4 PF02602 Family 79 2012 224.10 20 66.71 Changed Uroporphyrinogen-III synthase HemD
Hemagglutinin PF00509 Family 3 3 554.30 42 96.85 Changed Haemagglutinin
Hema_esterase PF03996 Domain 3 3 387.30 28 77.52 Changed Hemagglutinin esterase
Hema_HEFG PF02710 Family 3 3 148.30 28 29.69 Changed Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein
Hema_stalk PF08720 Domain 1 1 175.00 100 26.72 Changed Influenza C hemagglutinin stalk
HemeBinding_Shp PF11545 Family 1 15 142.90 32 47.36 Changed Cell surface heme-binding protein Shp
Hemerythrin PF01814 Domain 188 3179 128.50 15 47.28 Changed Hemerythrin HHE cation binding domain
Heme_oxygenase PF01126 Domain 18 800 192.50 23 70.65 Changed Heme oxygenase
HemN_C PF06969 Domain 49 1611 65.70 21 16.20 Changed HemN C-terminal domain
Hemocyanin_C PF03723 Domain 109 283 234.90 30 34.53 Changed Hemocyanin, ig-like domain
Hemocyanin_M PF00372 Domain 92 263 261.00 29 38.16 Changed Hemocyanin, copper containing domain
Hemocyanin_N PF03722 Domain 92 257 118.30 27 16.90 Changed Hemocyanin, all-alpha domain
HemolysinCabind PF00353 Repeat 1386 19916 17.70 42 25.17 Changed Haemolysin-type calcium-binding repeat (2 copies)
Hemolysin_N PF12563 Family 3 6 181.50 34 26.44 Changed Hemolytic toxin N terminal
Hemopexin PF00045 Repeat 76 5446 44.70 26 26.60 Changed Hemopexin
hemP PF10636 Family 99 168 37.00 47 54.81 Changed Hemin uptake protein hemP
HemS PF05171 Domain 63 237 130.00 28 60.11 Changed Haemin-degrading HemS.ChuX domain
HemX PF04375 Family 26 254 325.40 24 78.01 Changed HemX, putative uroporphyrinogen-III C-methyltransferase
HemY_N PF07219 Family 199 355 108.00 25 24.93 Changed HemY protein N-terminus
Hen1_L PF12623 Domain 61 105 233.90 51 50.46 Changed RNA repair, ligase-Pnkp-associating, region of Hen1
Hepar_II_III PF07940 Family 75 716 238.60 14 34.83 Changed Heparinase II/III-like protein
Hepar_II_III_N PF16889 Domain 28 233 272.40 18 42.72 Changed Heparinase II/III N-terminus
Hepatitis_core PF00906 Domain 2 8 113.20 28 94.18 Changed Hepatitis core antigen
Hepcidin PF06446 Domain 19 53 52.50 43 61.42 Changed Hepcidin
HEPN PF05168 Family 85 883 117.60 17 16.79 Changed HEPN domain
HEPPP_synt_1 PF07307 Family 16 60 202.20 25 78.12 Changed Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
Hepsin-SRCR PF09272 Domain 2 62 103.10 64 23.92 Changed Hepsin, SRCR
Hep_59 PF07052 Family 98 323 99.20 34 32.26 Changed Hepatocellular carcinoma-associated antigen 59
Hep_core_N PF08290 Domain 1 1 27.00 100 12.74 Changed Hepatitis core protein, putative zinc finger
Herp-Cyclin PF09241 Domain 1 1 106.00 100 41.73 Changed Herpesviridae viral cyclin
Herpes_alk_exo PF01771 Family 9 40 274.60 16 56.84 Changed Herpesvirus alkaline exonuclease
Herpes_BBRF1 PF04793 Family 4 5 281.80 28 92.27 Changed BRRF1-like protein
Herpes_BLLF1 PF05109 Family 1 8 301.50 33 75.87 Changed Herpes virus major outer envelope glycoprotein (BLLF1)
Herpes_BLRF2 PF05812 Family 5 6 122.30 34 88.43 Changed Herpesvirus BLRF2 protein
Herpes_BMRF2 PF04633 Family 5 6 348.50 30 97.80 Changed Herpesvirus BMRF2 protein
Herpes_BTRF1 PF04682 Family 5 6 256.00 38 67.34 Changed Herpesvirus BTRF1 protein conserved region
Herpes_capsid PF06112 Family 4 7 159.10 35 87.85 Changed Gammaherpesvirus capsid protein
Herpes_DNAp_acc PF04929 Family 5 6 394.00 34 98.62 Changed Herpes DNA replication accessory factor
Herpes_env PF01673 Family 5 22 290.60 20 84.22 Changed Herpesvirus putative major envelope glycoprotein
Herpes_gE PF02480 Family 5 17 209.10 14 55.91 Changed Alphaherpesvirus glycoprotein E
Herpes_gI PF01688 Domain 5 5 156.60 31 41.67 Changed Alphaherpesvirus glycoprotein I
Herpes_glycop PF01528 Family 7 14 363.90 27 90.98 Changed Herpesvirus glycoprotein M
Herpes_glycop_D PF01537 Domain 22 5 122.80 26 27.02 Changed Herpesvirus glycoprotein D/GG/GX domain
Herpes_glycop_H PF02489 Family 9 15 584.10 20 77.22 Changed Herpesvirus glycoprotein H
Herpes_gp2 PF05955 Family 5 0 0.00 0 0.00 Changed Equine herpesvirus glycoprotein gp2
Herpes_Helicase PF02689 Family 9 574 98.70 35 18.83 Changed Helicase
Herpes_heli_pri PF05774 Family 3 4 121.20 21 43.58 Changed Herpesvirus helicase-primase complex component
Herpes_HEPA PF03324 Family 9 14 94.60 27 14.20 Changed Herpesvirus DNA helicase/primase complex associated protein
Herpes_ICP4_C PF03585 Family 3 4 430.80 51 27.58 Changed Herpesvirus ICP4-like protein C-terminal region
Herpes_ICP4_N PF03584 Family 4 5 175.60 42 10.60 Changed Herpesvirus ICP4-like protein N-terminal region
Herpes_IE1 PF07340 Family 1 2 243.50 89 45.47 Changed Cytomegalovirus IE1 protein
Herpes_IE2_3 PF03361 Family 5 7 161.70 29 21.28 Changed Herpes virus intermediate/early protein 2/3
Herpes_IE68 PF02479 Family 4 5 118.40 26 40.88 Changed Herpesvirus immediate early protein
Herpes_IR6 PF06307 Family 4 0 0.00 0 0.00 Changed Herpesvirus IR6 protein
Herpes_LAMP2 PF06126 Family 2 1 488.00 100 99.80 Changed Herpesvirus Latent membrane protein 2
Herpes_LMP1 PF05297 Family 2 2 378.50 97 100.00 Changed Herpesvirus latent membrane protein 1 (LMP1)
Herpes_LMP2 PF07415 Family 1 3 373.00 50 95.56 Changed Gammaherpesvirus latent membrane protein (LMP2) protein
Herpes_LP PF03363 Family 2 12 139.30 98 165.22 Changed Herpesvirus leader protein
Herpes_MCP PF03122 Family 11 14 1356.40 36 98.54 Changed Herpes virus major capsid protein
Herpes_ORF11 PF04797 Family 9 13 359.80 19 84.91 Changed Herpesvirus dUTPase protein
Herpes_ori_bp PF02399 Family 5 50 259.80 18 35.91 Changed Origin of replication binding protein
Herpes_PAP PF03325 Family 1 3 231.00 57 58.14 Changed Herpesvirus polymerase accessory protein
Herpes_pp38 PF04846 Family 2 2 63.00 32 28.31 Changed Herpesvirus pp38 phosphoprotein
Herpes_pp85 PF04637 Family 2 4 456.50 32 72.58 Changed Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
Herpes_TAF50 PF03326 Family 4 9 335.40 18 80.21 Changed Herpesvirus transcription activation factor (transactivator)
Herpes_teg_N PF04843 Family 11 41 173.00 20 8.63 Changed Herpesvirus tegument protein, N-terminal conserved region
Herpes_TK PF00693 Domain 5 11 260.70 26 54.33 Changed Thymidine kinase from herpesvirus
Herpes_TK_C PF08465 Family 5 6 33.00 48 5.67 Changed Thymidine kinase from Herpesvirus C-terminal
Herpes_U15 PF05613 Family 2 2 110.00 84 73.09 Changed Human herpesvirus U15 protein
Herpes_U26 PF07402 Family 2 2 293.00 93 99.32 Changed Human herpesvirus U26 protein
Herpes_U30 PF04523 Family 7 9 919.90 23 88.36 Changed Herpes virus tegument protein U30
Herpes_U34 PF04541 Family 5 13 197.10 28 67.87 Changed Herpesvirus virion protein U34
Herpes_U44 PF04533 Family 3 9 204.90 34 87.31 Changed Herpes virus U44 protein
Herpes_U47 PF05467 Family 1 3 433.00 57 93.52 Changed Herpesvirus glycoprotein U47
Herpes_U5 PF05999 Family 2 3 429.70 45 65.93 Changed Herpesvirus U5-like family
Herpes_U55 PF06501 Family 3 2 430.00 94 93.07 Changed Human herpesvirus U55 protein
Herpes_U59 PF04529 Family 8 3 364.70 50 96.90 Changed Herpesvirus U59 protein
Herpes_UL1 PF05259 Family 4 5 103.60 26 52.64 Changed Herpesvirus glycoprotein L
Herpes_UL14 PF03580 Family 4 5 148.20 37 68.87 Changed Herpesvirus UL14-like protein
Herpes_UL16 PF03044 Family 12 14 325.40 24 93.94 Changed Herpesvirus UL16/UL94 family
Herpes_UL17 PF04559 Family 36 16 467.80 18 95.55 Changed Herpesvirus UL17 protein
Herpes_UL20 PF04544 Family 4 5 177.40 29 76.07 Changed Herpesvirus egress protein UL20
Herpes_UL21 PF03252 Family 3 5 505.20 31 92.77 Changed Herpesvirus UL21
Herpes_UL24 PF01646 Family 10 14 180.40 32 66.41 Changed Herpes virus proteins UL24 and UL76
Herpes_UL25 PF01499 Family 10 14 539.70 26 93.84 Changed Herpesvirus UL25 family
Herpes_UL3 PF03369 Family 3 4 134.50 64 58.67 Changed Herpesvirus UL3 protein
Herpes_UL31 PF02718 Family 8 14 261.50 27 85.60 Changed Herpesvirus UL31-like protein
Herpes_UL32 PF06070 Family 2 6 457.70 23 98.88 Changed Herpesvirus large structural phosphoprotein UL32
Herpes_UL33 PF03581 Family 10 13 76.50 33 63.35 Changed Herpesvirus UL33-like protein
Herpes_UL35 PF04496 Family 3 4 99.50 39 67.46 Changed Herpesvirus UL35 family
Herpes_UL36 PF03586 Family 4 5 253.60 33 8.14 Changed Herpesvirus UL36 tegument protein
Herpes_UL37_1 PF03970 Family 3 4 271.50 38 25.13 Changed Herpesvirus UL37 tegument protein
Herpes_UL37_2 PF07413 Family 2 3 282.00 44 78.70 Changed Betaherpesvirus immediate-early glycoprotein UL37
Herpes_UL4 PF03277 Family 5 5 192.40 32 82.65 Changed Herpesvirus UL4 family
Herpes_UL42 PF02282 Domain 4 8 138.40 20 63.80 Changed DNA polymerase processivity factor (UL42)
Herpes_UL43 PF05072 Family 4 4 377.50 25 91.13 Changed Herpesvirus UL43 protein
Herpes_UL46 PF03387 Family 3 5 432.60 29 66.03 Changed Herpesvirus UL46 protein
Herpes_UL47 PF03362 Family 3 5 433.60 25 59.87 Changed Herpesvirus UL47 protein
Herpes_UL49_1 PF03117 Family 6 9 242.70 37 49.09 Changed UL49 family
Herpes_UL49_2 PF04823 Family 4 5 95.60 40 33.29 Changed Herpesvirus UL49 tegument protein
Herpes_UL49_5 PF05702 Family 8 2 97.00 24 96.04 Changed Herpesvirus UL49.5 envelope/tegument protein
Herpes_UL51 PF04540 Family 3 5 155.60 40 61.94 Changed Herpesvirus UL51 protein
Herpes_UL52 PF03121 Family 38 184 64.00 37 10.54 Changed Herpesviridae UL52/UL70 DNA primase
Herpes_UL55 PF04537 Family 3 4 165.20 38 92.19 Changed Herpesvirus UL55 protein
Herpes_UL56 PF04534 Family 2 2 196.50 63 90.97 Changed Herpesvirus UL56 protein
Herpes_UL6 PF01763 Family 11 14 553.20 33 84.21 Changed Herpesvirus UL6 like
Herpes_UL69 PF05459 Family 12 15 216.10 22 40.07 Changed Herpesvirus transcriptional regulator family
Herpes_UL7 PF01677 Family 11 14 219.60 24 76.95 Changed Herpesvirus UL7 like
Herpes_UL73 PF03554 Family 9 11 81.60 31 79.26 Changed UL73 viral envelope glycoprotein
Herpes_UL74 PF07982 Family 1 1 418.00 100 88.56 Changed Herpes UL74 glycoproteins
Herpes_UL79 PF03049 Family 6 9 250.60 34 93.96 Changed UL79 family
Herpes_UL82_83 PF05784 Family 3 4 339.50 28 66.67 Changed Betaherpesvirus UL82/83 protein N terminus
Herpes_UL87 PF03043 Family 5 9 516.00 39 68.24 Changed Herpesvirus UL87 family
Herpes_UL92 PF03048 Family 7 22 134.50 26 48.48 Changed UL92 family
Herpes_UL95 PF03038 Family 6 10 338.50 34 94.87 Changed UL95 family
Herpes_US12 PF05363 Family 2 2 84.00 50 96.55 Changed Herpesvirus US12 family
Herpes_US9 PF06072 Family 2 3 59.00 52 62.99 Changed Alphaherpesvirus tegument protein US9
Herpes_V23 PF01802 Family 11 14 298.80 28 97.12 Changed Herpesvirus VP23 like capsid protein
Herpes_VP19C PF03327 Family 11 14 289.30 22 76.14 Changed Herpesvirus capsid shell protein VP19C
Herpeto_peptide PF14409 Family 3 6 56.50 50 98.55 Changed Ribosomally synthesized peptide in Herpetosiphon
HERV-K_env_2 PF13804 Domain 11 30 145.60 45 24.26 Changed Retro-transcribing viruses envelope glycoprotein
HERV-K_REC PF15695 Family 2 20 84.50 68 25.16 Changed Rec (regulator of expression encoded by corf) of HERV-K-113
HET PF06985 Family 99 5147 138.80 21 21.88 Changed Heterokaryon incompatibility protein (HET)
Het-C PF07217 Family 42 318 497.50 43 66.52 Changed Heterokaryon incompatibility protein Het-C
HET-S PF17108 Family 9 14 22.90 55 2.33 Changed N-terminal small S protein of HET, non-prionic
HET-s_218-289 PF11558 Motif 16 26 63.70 36 22.38 Changed Het-s 218-289
HEV_ORF1 PF02444 Family 1 1 114.00 100 100.00 Changed Hepatitis E virus ORF-2 (Putative capsid protein)
Hexapep PF00132 Repeat 216 24887 35.90 24 21.13 Changed Bacterial transferase hexapeptide (six repeats)
Hexapep_2 PF14602 Repeat 57 3379 33.70 31 13.02 Changed Hexapeptide repeat of succinyl-transferase
HEXIM PF15313 Family 33 154 128.30 41 41.18 Changed Hexamethylene bis-acetamide-inducible protein
Hexokinase_1 PF00349 Domain 442 1986 192.90 35 40.62 Changed Hexokinase
Hexokinase_2 PF03727 Domain 464 2074 228.50 33 49.85 Changed Hexokinase
Hexose_dehydrat PF03559 Family 83 110 201.40 37 87.06 Changed NDP-hexose 2,3-dehydratase
Hex_IIIa PF02455 Family 3 4 470.80 29 85.13 Changed Hexon-associated protein (IIIa)
He_PIG PF05345 Family 103 1213 47.80 32 7.39 Changed Putative Ig domain
He_PIG_assoc PF10632 Domain 25 41 29.00 54 4.67 Changed He_PIG associated, NEW1 domain of bacterial glycohydrolase
HflK_N PF12221 Family 107 311 52.50 41 12.94 Changed Bacterial membrane protein N terminal
HGAL PF15666 Family 24 57 85.60 53 53.82 Changed Germinal center-associated lymphoma
HGD-D PF06050 Family 376 1044 310.10 18 44.28 Changed 2-hydroxyglutaryl-CoA dehydratase, D-component
hGDE_central PF14702 Domain 138 366 234.60 36 16.83 Changed Central domain of human glycogen debranching enzyme
hGDE_N PF14699 Family 143 298 93.20 31 6.31 Changed N-terminal domain from the human glycogen debranching enzyme
HgmA PF04209 Family 12 884 369.30 37 90.93 Changed homogentisate 1,2-dioxygenase
HGTP_anticodon PF03129 Domain 99 8889 93.10 21 16.56 Changed Anticodon binding domain
HGTP_anticodon2 PF12745 Domain 60 310 217.60 25 14.82 Changed Anticodon binding domain of tRNAs
HGWP PF03578 Repeat 76 1161 27.50 63 31.12 Changed HGWP repeat
HHA PF05321 Family 8 87 57.50 60 81.66 Changed Haemolysin expression modulating protein
HHH PF00633 Motif 90 3163 29.30 43 9.89 Changed Helix-hairpin-helix motif
HhH-GPD PF00730 Domain 52 5972 142.10 20 44.77 Changed HhH-GPD superfamily base excision DNA repair protein
HHH_2 PF12826 Motif 46 2226 61.20 31 9.63 Changed Helix-hairpin-helix motif
HHH_3 PF12836 Domain 220 3459 63.20 33 14.27 Changed Helix-hairpin-helix motif
HHH_4 PF14490 Family 433 719 90.90 32 12.25 Changed Helix-hairpin-helix containing domain
HHH_5 PF14520 Domain 219 5592 56.70 23 12.38 Changed Helix-hairpin-helix domain
HHH_6 PF14579 Domain 232 2596 91.00 30 7.81 Changed Helix-hairpin-helix motif
HHH_7 PF14635 Domain 3 421 104.60 40 6.95 Changed Helix-hairpin-helix motif
HHH_8 PF14716 Domain 260 1032 67.40 26 12.84 Changed Helix-hairpin-helix domain
HHV-1_VABD PF16852 Domain 2 2 41.00 62 8.01 Changed Herpes viral adaptor-to-host cellular mRNA binding domain
HHV-5_US34A PF17087 Family 1 1 64.00 100 100.00 Changed Herpesvirus US34A protein family
HHV6-IE PF03753 Family 1 4 468.20 35 92.77 Changed Human herpesvirus 6 immediate early protein
HH_signal PF01085 Domain 17 269 139.20 70 31.95 Changed Hedgehog amino-terminal signalling domain
HI0933_like PF03486 Family 47 1786 336.00 28 84.66 Changed HI0933-like protein
HiaBD2 PF15403 Motif 18 0 0.00 0 0.00 Changed HiaBD2_N domain of Trimeric autotransporter adhesin (GIN)
HicA_toxin PF07927 Family 439 950 56.90 24 57.38 Changed HicA toxin of bacterial toxin-antitoxin,
HicB PF05534 Domain 19 391 45.20 30 38.56 Changed HicB family
HicB-like_2 PF15970 Domain 2 17 80.20 31 55.63 Changed HicB_like antitoxin of bacterial toxin-antitoxin system
HicB_lk_antitox PF15919 Domain 28 951 84.80 26 86.33 Changed HicB_like antitoxin of bacterial toxin-antitoxin system
Hid1 PF12722 Family 19 390 601.10 28 89.65 Changed High-temperature-induced dauer-formation protein
HIF-1 PF11413 Family 16 225 31.80 63 4.24 Changed Hypoxia-inducible factor-1
HIF-1a_CTAD PF08778 Domain 11 154 36.80 72 4.27 Changed HIF-1 alpha C terminal transactivation domain
HigB-like_toxin PF05015 Family 6 438 87.60 33 94.71 Changed RelE-like toxin of type II toxin-antitoxin system HigB
HigB_toxin PF09907 Family 164 258 72.50 37 72.86 Changed HigB_toxin, RelE-like toxic component of a toxin-antitoxin system
HIGH_NTase1 PF05636 Family 202 491 365.80 31 95.08 Changed HIGH Nucleotidyl Transferase
HIGH_NTase1_ass PF16581 Domain 8 21 190.80 35 50.28 Changed Cytidyltransferase-related C-terminal region
HIG_1_N PF04588 Family 225 985 51.70 28 34.98 Changed Hypoxia induced protein conserved region
HILPDA PF15220 Family 4 16 63.30 76 87.63 Changed Hypoxia-inducible lipid droplet-associated
HIM1 PF08732 Family 12 102 135.90 29 51.18 Changed HIM1
HIN PF02760 Family 48 150 163.90 51 43.13 Changed HIN-200/IF120x domain
Hint PF01079 Family 29 427 194.10 29 43.52 Changed Hint module
Hint_2 PF13403 Domain 46 300 138.30 32 24.43 Changed Hint domain
HIP1_clath_bdg PF16515 Domain 34 147 97.30 47 9.65 Changed Clathrin-binding domain of Huntingtin-interacting protein 1
HipA_C PF07804 Domain 449 883 144.80 20 36.16 Changed HipA-like C-terminal domain
HipA_N PF07805 Domain 391 845 81.40 27 19.79 Changed HipA-like N-terminal domain
HIPIP PF01355 Domain 37 98 63.90 36 57.74 Changed High potential iron-sulfur protein
Hira PF07569 Family 111 442 194.90 26 21.27 Changed TUP1-like enhancer of split
HIRAN PF08797 Domain 49 736 100.40 21 12.51 Changed HIRAN domain
HIRA_B PF09453 Motif 42 295 22.40 50 2.32 Changed HIRA B motif
Hirudin PF00713 Domain 8 0 0.00 0 0.00 Changed Hirudin
HisG PF01634 Family 751 1645 160.20 34 58.98 Changed ATP phosphoribosyltransferase
HisG_C PF08029 Domain 408 885 74.10 34 24.39 Changed HisG, C-terminal domain
HisKA PF00512 Domain 265 34302 68.20 24 9.84 Changed His Kinase A (phospho-acceptor) domain
HisKA_2 PF07568 Domain 68 1036 75.50 35 12.39 Changed Histidine kinase
HisKA_3 PF07730 Domain 172 5249 67.40 26 14.39 Changed Histidine kinase
HisKA_4TM PF16926 Family 3 34 159.00 21 39.43 Changed Archaeal 4TM region of histidine kinase
HisKA_7TM PF16927 Family 167 456 218.60 15 34.64 Changed N-terminal 7TM region of histidine kinase
HisK_N PF09385 Domain 9 14 129.60 35 39.19 Changed Histidine kinase N terminal
Histidinol_dh PF00815 Family 684 1806 398.10 41 84.84 Changed Histidinol dehydrogenase
Histone PF00125 Domain 30 7393 103.80 31 60.53 Changed Core histone H2A/H2B/H3/H4
Histone_H2A_C PF16211 Family 164 2671 34.10 61 22.72 Changed C-terminus of histone H2A
Histone_HNS PF00816 Family 227 540 91.00 25 76.43 Changed H-NS histone family
Hist_deacetyl PF00850 Domain 83 4541 279.40 29 56.22 Changed Histone deacetylase domain
Hist_rich_Ca-bd PF10529 Repeat 38 175 15.20 61 13.33 Changed Histidine-rich Calcium-binding repeat region
His_binding PF02098 Domain 13 31 132.70 17 76.83 Changed Tick histamine binding protein
His_biosynth PF00977 Family 135 3514 231.40 31 83.86 Changed Histidine biosynthesis protein
His_kinase PF06580 Family 1954 3179 79.80 32 15.70 Changed Histidine kinase
His_leader PF08047 Family 2 4 15.80 93 100.00 Changed Histidine operon leader peptide
His_Phos_1 PF00300 Domain 385 12393 157.30 19 61.84 Changed Histidine phosphatase superfamily (branch 1)
His_Phos_2 PF00328 Family 43 3462 313.00 14 56.51 Changed Histidine phosphatase superfamily (branch 2)
HIT PF01230 Domain 25 4038 96.30 27 59.87 Changed HIT domain
Hjc PF01870 Family 11 125 94.10 29 61.25 Changed Archaeal holliday junction resolvase (hjc)
HJURP_C PF12347 Domain 37 433 63.80 40 14.54 Changed Holliday junction regulator protein family C-terminal repeat
HJURP_mid PF12346 Domain 15 38 109.60 60 16.78 Changed Holliday junction recognition protein-associated repeat
HK PF02110 Domain 8 844 241.90 35 74.94 Changed Hydroxyethylthiazole kinase family
HK97-gp10_like PF04883 Family 59 313 87.50 18 60.64 Changed Bacteriophage HK97-gp10, putative tail-component
HK_sensor PF16750 Domain 28 38 107.30 29 23.67 Changed Sensor domain of 2-component histidine kinase
HLH PF00010 Domain 149 15608 53.70 29 14.13 Changed Helix-loop-helix DNA-binding domain
HlyC PF02794 Family 24 54 126.00 28 75.83 Changed RTX toxin acyltransferase family
HlyD PF00529 Family 43 544 328.60 13 82.45 Changed HlyD membrane-fusion protein of T1SS
HlyD_2 PF12700 Family 1 5 195.60 20 57.70 Changed HlyD family secretion protein
HlyD_3 PF13437 Family 70 3378 113.80 17 27.58 Changed HlyD family secretion protein
HlyD_D23 PF16576 Domain 155 8247 225.40 18 57.66 Changed Barrel-sandwich domain of CusB or HlyD membrane-fusion
HlyD_D4 PF16572 Domain 5 5 56.00 46 11.00 Changed Long alpha hairpin domain of cation efflux system protein, CusB
HlyE PF06109 Family 2 44 233.60 25 72.64 Changed Haemolysin E (HlyE)
HlyIII PF03006 Family 38 2913 208.70 22 68.78 Changed Haemolysin-III related
HlyU PF10115 Family 34 51 92.60 39 94.55 Changed Transcriptional activator HlyU
HMA PF00403 Domain 51 11383 60.70 23 17.62 Changed Heavy-metal-associated domain
HMD PF03201 Family 16 29 96.50 43 28.09 Changed H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
HMG-CoA_red PF00368 Family 278 1047 343.30 38 55.26 Changed Hydroxymethylglutaryl-coenzyme A reductase
HMG14_17 PF01101 Family 75 472 88.90 50 68.10 Changed HMG14 and HMG17
HMGL-like PF00682 Domain 15 6418 263.40 23 48.74 Changed HMGL-like
HMG_box PF00505 Domain 27 7661 67.20 26 15.79 Changed HMG (high mobility group) box
HMG_box_2 PF09011 Domain 9 1198 70.20 34 18.28 Changed HMG-box domain
HMG_box_5 PF14887 Family 3 94 83.10 72 12.93 Changed HMG (high mobility group) box 5
HMG_CoA_synt_C PF08540 Domain 7 882 210.50 29 51.52 Changed Hydroxymethylglutaryl-coenzyme A synthase C terminal
HMG_CoA_synt_N PF01154 Domain 3 815 164.00 47 35.76 Changed Hydroxymethylglutaryl-coenzyme A synthase N terminal
HMMR_C PF15908 Family 8 156 138.10 37 14.13 Changed Hyaluronan mediated motility receptor C-terminal
HMMR_N PF15905 Family 14 97 256.90 43 39.89 Changed Hyaluronan mediated motility receptor N-terminal
HmuY PF14064 Family 46 140 172.10 18 67.01 Changed HmuY protein
HN PF00423 Family 7 7 543.10 23 92.84 Changed Haemagglutinin-neuraminidase
HNF-1A_C PF04813 Family 6 56 83.60 65 14.51 Changed Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
HNF-1B_C PF04812 Family 13 151 225.70 59 41.04 Changed Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
HNF-1_N PF04814 Family 22 313 163.90 41 35.55 Changed Hepatocyte nuclear factor 1 (HNF-1), N terminus
HNF_C PF09354 Domain 17 182 63.10 47 14.82 Changed HNF3 C-terminal domain
HNH PF01844 Family 46 2066 47.60 25 14.04 Changed HNH endonuclease
HNHc_6 PF16784 Family 2 37 198.50 30 86.80 Changed Putative HNHc nuclease
HNH_2 PF13391 Domain 115 1155 73.40 22 20.29 Changed HNH endonuclease
HNH_3 PF13392 Domain 49 407 43.80 28 21.91 Changed HNH endonuclease
HNH_4 PF13395 Domain 37 338 53.20 31 6.52 Changed HNH endonuclease
HNH_5 PF14279 Domain 41 871 53.30 41 25.50 Changed HNH endonuclease
hNIFK_binding PF12196 Domain 25 85 38.30 64 13.98 Changed FHA Ki67 binding domain of hNIFK
HNOB PF07700 Domain 183 714 151.10 25 26.49 Changed Haem-NO-binding
HNOBA PF07701 Domain 69 1141 130.20 29 18.32 Changed Heme NO binding associated
HnRNPA1 PF11627 Family 35 282 37.80 75 13.63 Changed Nuclear factor hnRNPA1
HnRNP_M PF11532 Family 4 68 29.60 88 4.76 Changed Heterogeneous nuclear ribonucleoprotein M
HOASN PF14515 Domain 2 2 90.50 40 26.89 Changed Haem-oxygenase-associated N-terminal helices
HobA PF12163 Domain 20 26 176.70 37 98.46 Changed DNA replication regulator
HOIP-UBA PF16678 Domain 27 116 142.40 40 9.92 Changed UB-associated-like domain of HOIP or E3 ubiquitin-protein ligase
HOK_GEF PF01848 Family 15 38 41.70 39 79.49 Changed Hok/gef family
Holin_2-3 PF13272 Family 16 28 97.80 41 87.44 Changed Putative 2/3 transmembrane domain holin
Holin_9 PF16936 Family 7 11 78.00 60 81.48 Changed Putative holin
Holin_BhlA PF10960 Family 16 55 66.90 26 89.11 Changed BhlA holin family
Holin_BlyA PF05102 Family 3 2 60.00 31 95.24 Changed holin, BlyA family
Holin_SPP1 PF04688 Family 22 55 74.40 32 86.55 Changed SPP1 phage holin
Hol_Tox PF16935 Family 4 41 40.30 40 95.60 Changed Putative Holin-like Toxin (Hol-Tox)
Homeobox PF00046 Domain 157 22978 56.20 34 15.00 Changed Homeobox domain
Homeobox_KN PF05920 Family 73 2942 39.80 51 9.02 Changed Homeobox KN domain
Homez PF11569 Family 4 177 48.70 46 6.54 Changed Homeodomain leucine-zipper encoding, Homez
Homoserine_dh PF00742 Domain 953 2139 184.60 36 37.20 Changed Homoserine dehydrogenase
Hom_end PF05204 Domain 24 80 105.70 25 11.16 Changed Homing endonuclease
Hom_end_hint PF05203 Domain 23 76 336.60 25 29.00 Changed Hom_end-associated Hint
HOOK PF05622 Family 21 708 515.90 24 57.14 Changed HOOK protein
HopJ PF08888 Domain 63 101 107.70 45 83.75 Changed HopJ type III effector protein
HopW1-1 PF15457 Family 5 0 0.00 0 0.00 Changed Type III T3SS secreted effector HopW1-1/HopPmaA
HORMA PF02301 Domain 137 1154 173.00 20 56.11 Changed HORMA domain
Hormone_1 PF00103 Domain 13 422 186.20 28 89.04 Changed Somatotropin hormone family
Hormone_2 PF00123 Family 46 641 27.60 40 29.99 Changed Peptide hormone
Hormone_3 PF00159 Family 19 202 34.90 60 33.38 Changed Pancreatic hormone peptide
Hormone_4 PF00220 Family 4 101 9.00 84 6.21 Changed Neurohypophysial hormones, N-terminal Domain
Hormone_5 PF00184 Family 31 125 77.10 63 53.34 Changed Neurohypophysial hormones, C-terminal Domain
Hormone_6 PF00236 Domain 12 71 93.70 61 77.98 Changed Glycoprotein hormone
Hormone_recep PF00104 Domain 341 6290 185.10 18 39.45 Changed Ligand-binding domain of nuclear hormone receptor
Host_attach PF10116 Family 115 193 130.60 23 84.56 Changed Protein required for attachment to host cells
Hox9_act PF04617 Family 48 243 168.90 36 62.41 Changed Hox9 activation region
HoxA13_N PF12284 Family 24 189 106.90 39 36.20 Changed Hox protein A13 N terminal
HpaB PF03241 Family 151 299 199.70 26 40.34 Changed 4-hydroxyphenylacetate 3-hydroxylase C terminal
HpaB_N PF11794 Family 163 302 265.00 33 53.79 Changed 4-hydroxyphenylacetate 3-hydroxylase N terminal
HpaP PF09483 Family 8 13 176.50 28 87.99 Changed Type III secretion protein (HpaP)
HpcH_HpaI PF03328 Family 19 2484 213.60 21 73.30 Changed HpcH/HpaI aldolase/citrate lyase family
HPD PF05044 Domain 21 238 135.70 64 21.19 Changed Homeo-prospero domain
Hph PF13694 Family 6 28 162.30 31 31.29 Changed Sec63/Sec62 complex-interacting family
HPHLAWLY PF14925 Family 15 50 504.90 41 69.34 Changed Domain of unknown function
HPIH PF13323 Family 74 153 147.20 31 13.47 Changed N-terminal domain with HPIH motif
HPIP PF15226 Family 7 53 104.80 61 67.00 Changed HCF-1 beta-propeller-interacting protein family
HPP PF04982 Family 359 691 120.20 32 42.33 Changed HPP family
HPPK PF01288 Domain 1038 1773 128.80 35 50.49 Changed 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Hpre_diP_synt_I PF07456 Family 41 349 144.20 35 78.10 Changed Heptaprenyl diphosphate synthase component I
Hpr_kinase_C PF07475 Domain 59 725 160.80 42 55.44 Changed HPr Serine kinase C-terminal domain
Hpr_kinase_N PF02603 Family 368 600 125.20 27 39.82 Changed HPr Serine kinase N terminus
HPS3_C PF14763 Domain 15 76 312.20 51 33.17 Changed Hermansky-Pudlak syndrome 3, C-terminal
HPS3_Mid PF14762 Domain 19 106 350.40 36 35.63 Changed Hermansky-Pudlak syndrome 3, middle region
HPS3_N PF14761 Domain 25 106 198.00 39 18.93 Changed Hermansky-Pudlak syndrome 3
HPS6 PF15702 Family 14 61 659.70 46 88.61 Changed Hermansky-Pudlak syndrome 6 protein
Hpt PF01627 Family 229 4759 94.30 17 13.96 Changed Hpt domain
HPTransfase PF10090 Family 70 111 179.80 30 83.56 Changed Histidine phosphotransferase
HpuA PF16960 Family 2 3 183.00 26 75.00 Changed Haemoglobin-haptoglobin utilisation, porphyrin transporter
HP_OMP PF01856 Family 27 165 160.00 22 56.58 Changed Helicobacter outer membrane protein
HP_OMP_2 PF02521 Domain 29 54 418.20 31 93.05 Changed Putative outer membrane protein
HR1 PF02185 Family 216 1444 65.70 26 12.33 Changed Hr1 repeat
HrcA PF01628 Family 732 1111 219.60 24 63.69 Changed HrcA protein C terminal domain
HrcA_DNA-bdg PF03444 Family 13 446 77.10 40 23.74 Changed Winged helix-turn-helix transcription repressor, HrcA DNA-binding
HRCT1 PF15758 Family 7 17 76.30 66 70.30 Changed Histidine-rich carboxyl terminus protein 1
HRDC PF00570 Domain 120 2862 66.90 24 9.76 Changed HRDC domain
HRG PF16954 Family 46 155 55.80 27 59.78 Changed Haem-transporter, endosomal/lysosomal, haem-responsive gene
HRI1 PF16815 Domain 61 153 231.20 25 80.57 Changed Protein HRI1
HRM PF02793 Family 127 1967 65.10 29 8.91 Changed Hormone receptor domain
HrpA_pilin PF09589 Family 1 4 86.50 31 61.13 Changed HrpA pilus formation protein
HrpB1_HrpK PF09613 Family 13 19 126.50 28 74.93 Changed Bacterial type III secretion protein (HrpB1_HrpK)
HrpB2 PF09487 Family 8 12 113.60 30 85.35 Changed Bacterial type III secretion protein (HrpB2)
HrpB4 PF09502 Family 7 12 216.10 30 93.81 Changed Bacterial type III secretion protein (HrpB4)
HrpB7 PF09486 Family 8 12 156.20 25 91.24 Changed Bacterial type III secretion protein (HrpB7)
HrpB_C PF08482 Family 265 462 131.90 46 16.02 Changed ATP-dependent helicase C-terminal
HrpE PF06188 Family 4 29 176.10 18 85.69 Changed HrpE/YscL/FliH and V-type ATPase subunit E
HrpF PF06266 Family 8 12 74.10 41 100.00 Changed HrpF protein
HrpJ PF07201 Domain 34 66 163.50 18 46.24 Changed HrpJ-like domain
Hrs_helical PF12210 Domain 23 133 92.50 61 12.74 Changed Hepatocyte growth factor-regulated tyrosine kinase substrate
HRXXH PF13933 Domain 24 119 226.20 38 78.68 Changed Putative peptidase family
HR_lesion PF05514 Family 7 162 128.20 45 78.65 Changed HR-like lesion-inducing
Hs1pro-1_C PF07014 Family 14 54 257.60 57 58.82 Changed Hs1pro-1 protein C-terminus
Hs1pro-1_N PF07231 Family 10 51 168.40 46 37.35 Changed Hs1pro-1 N-terminus
HS1_rep PF02218 Repeat 97 1057 34.50 59 31.61 Changed Repeat in HS1/Cortactin
HSA PF07529 Domain 181 1140 67.40 24 4.08 Changed HSA
hSac2 PF12456 Family 89 414 107.60 27 14.81 Changed Inositol phosphatase
HsbA PF12296 Family 241 396 120.40 18 52.61 Changed Hydrophobic surface binding protein A
HSBP1 PF06825 Family 66 353 47.80 44 43.99 Changed Heat shock factor binding protein 1
HSCB_C PF07743 Domain 337 616 74.30 25 31.96 Changed HSCB C-terminal oligomerisation domain
HSD3 PF15244 Family 15 104 279.10 39 65.10 Changed Spermatogenesis-associated protein 7, or HSD3
HsdM_N PF12161 Domain 67 1576 134.20 19 24.51 Changed HsdM N-terminal domain
HSDR_N PF04313 Family 75 1288 185.60 18 18.90 Changed Type I restriction enzyme R protein N terminus (HSDR_N)
HSDR_N_2 PF13588 Domain 41 606 108.50 21 23.66 Changed Type I restriction enzyme R protein N terminus (HSDR_N)
HSF_DNA-bind PF00447 Family 429 2632 95.60 37 22.46 Changed HSF-type DNA-binding
hSH3 PF14603 Domain 20 194 82.30 43 15.12 Changed Helically-extended SH3 domain
HSL_N PF06350 Family 29 161 262.80 35 36.49 Changed Hormone-sensitive lipase (HSL) N-terminus
HSNSD PF12062 Family 25 360 403.10 58 55.64 Changed heparan sulfate-N-deacetylase
HSP20 PF00011 Family 25 6373 97.10 22 54.21 Changed Hsp20/alpha crystallin family
HSP33 PF01430 Family 627 1006 274.90 29 91.19 Changed Hsp33 protein
HSP70 PF00012 Family 28 11419 411.20 29 81.27 Changed Hsp70 protein
HSP90 PF00183 Family 114 3081 370.60 30 66.26 Changed Hsp90 protein
HSP9_HSP12 PF04119 Family 89 166 57.90 45 55.76 Changed Heat shock protein 9/12
HSV_VP16_C PF12149 Domain 2 2 30.00 73 6.12 Changed Herpes simplex virus virion protein 16 C terminal
HtaA PF04213 Family 94 150 161.20 27 44.88 Changed Htaa
HTHP PF11534 Family 18 32 71.00 53 86.68 Changed Hexameric tyrosine-coordinated heme protein (HTHP)
HTH_1 PF00126 Domain 1339 25746 59.80 33 19.96 Changed Bacterial regulatory helix-turn-helix protein, lysR family
HTH_10 PF04967 Domain 26 813 52.80 39 15.26 Changed HTH DNA binding domain
HTH_11 PF08279 Domain 92 3622 54.60 25 16.58 Changed HTH domain
HTH_12 PF08461 Domain 9 247 64.40 32 10.06 Changed Ribonuclease R winged-helix domain
HTH_13 PF11972 Domain 11 44 53.60 46 15.22 Changed HTH DNA binding domain
HTH_15 PF12324 Domain 7 23 72.50 37 28.97 Changed Helix-turn-helix domain of alkylmercury lyase
HTH_16 PF12645 Domain 62 160 59.70 28 69.26 Changed Helix-turn-helix domain
HTH_17 PF12728 Domain 237 3646 50.70 22 40.01 Changed Helix-turn-helix domain
HTH_18 PF12833 Domain 326 21284 79.80 26 22.05 Changed Helix-turn-helix domain
HTH_19 PF12844 Domain 39 1545 63.60 22 34.66 Changed Helix-turn-helix domain
HTH_20 PF12840 Domain 88 4175 61.00 27 37.00 Changed Helix-turn-helix domain
HTH_21 PF13276 Domain 218 2687 58.40 25 21.49 Changed HTH-like domain
HTH_22 PF13309 Domain 221 425 62.10 30 28.28 Changed HTH domain
HTH_23 PF13384 Domain 190 1022 47.60 19 19.58 Changed Homeodomain-like domain
HTH_24 PF13412 Domain 279 4842 46.60 28 21.50 Changed Winged helix-turn-helix DNA-binding
HTH_25 PF13413 Domain 139 887 61.80 30 20.45 Changed Helix-turn-helix domain
HTH_26 PF13443 Domain 104 1883 61.40 25 56.79 Changed Cro/C1-type HTH DNA-binding domain
HTH_27 PF13463 Domain 30 655 66.00 21 38.99 Changed Winged helix DNA-binding domain
HTH_28 PF13518 Domain 90 1076 51.90 21 26.89 Changed Helix-turn-helix domain
HTH_29 PF13551 Domain 56 483 60.10 22 21.07 Changed Winged helix-turn helix
HTH_3 PF01381 Domain 175 15916 53.80 23 31.71 Changed Helix-turn-helix
HTH_30 PF13556 Domain 341 2540 58.50 30 13.41 Changed PucR C-terminal helix-turn-helix domain
HTH_31 PF13560 Domain 111 5576 65.40 24 25.75 Changed Helix-turn-helix domain
HTH_32 PF13565 Domain 355 944 76.30 22 24.76 Changed Homeodomain-like domain
HTH_33 PF13592 Domain 133 562 57.00 22 22.71 Changed Winged helix-turn helix
HTH_34 PF13601 Domain 22 360 79.60 32 72.60 Changed Winged helix DNA-binding domain
HTH_35 PF13693 Domain 37 192 72.40 55 82.50 Changed Winged helix-turn-helix DNA-binding
HTH_36 PF13730 Domain 58 435 54.70 23 22.88 Changed Helix-turn-helix domain
HTH_37 PF13744 Domain 28 388 79.00 23 73.63 Changed Helix-turn-helix domain
HTH_38 PF13936 Domain 66 912 42.90 34 13.97 Changed Helix-turn-helix domain
HTH_39 PF14090 Domain 22 55 66.30 27 62.07 Changed Helix-turn-helix domain
HTH_40 PF14493 Domain 286 475 90.60 23 12.38 Changed Helix-turn-helix domain
HTH_41 PF14502 Family 7 40 47.60 40 15.65 Changed Helix-turn-helix domain
HTH_42 PF06224 Family 84 707 318.00 20 75.18 Changed Winged helix DNA-binding domain
HTH_43 PF09904 Family 24 59 89.30 47 89.86 Changed Winged helix-turn helix
HTH_44 PF14641 Domain 53 385 123.80 29 8.36 Changed Helix-turn-helix DNA-binding domain of SPT6
HTH_45 PF14947 Domain 19 206 76.50 24 69.16 Changed Winged helix-turn-helix
HTH_46 PF15977 Family 19 49 67.40 37 33.04 Changed Winged helix-turn-helix DNA binding
HTH_47 PF16221 Domain 19 55 78.10 44 17.88 Changed winged helix-turn-helix
HTH_5 PF01022 Domain 38 4517 46.80 31 31.68 Changed Bacterial regulatory protein, arsR family
HTH_6 PF01418 Domain 10 2437 74.90 24 26.48 Changed Helix-turn-helix domain, rpiR family
HTH_7 PF02796 Domain 14 789 43.80 26 21.41 Changed Helix-turn-helix domain of resolvase
HTH_8 PF02954 Domain 59 7238 41.00 31 8.95 Changed Bacterial regulatory protein, Fis family
HTH_9 PF08221 Domain 17 364 60.40 30 10.80 Changed RNA polymerase III subunit RPC82 helix-turn-helix domain
HTH_AraC PF00165 Domain 55 168 38.20 30 17.10 Changed Bacterial regulatory helix-turn-helix proteins, AraC family
HTH_AsnC-type PF13404 Domain 238 2345 42.00 34 25.39 Changed AsnC-type helix-turn-helix domain
HTH_CodY PF08222 Domain 3 270 60.80 76 23.43 Changed CodY helix-turn-helix domain
HTH_Crp_2 PF13545 Domain 936 4131 71.60 23 30.60 Changed Crp-like helix-turn-helix domain
HTH_DeoR PF08220 Domain 15 3086 55.40 33 21.12 Changed DeoR-like helix-turn-helix domain
HTH_IclR PF09339 Domain 84 4500 50.90 25 19.24 Changed IclR helix-turn-helix domain
HTH_Mga PF08280 Domain 15 108 56.70 21 11.98 Changed M protein trans-acting positive regulator (MGA) HTH domain
HTH_micro PF17007 Family 7 16 298.70 17 50.91 Changed HTH-like
HTH_OrfB_IS605 PF12323 Family 123 1371 45.30 32 12.19 Changed Helix-turn-helix domain
HTH_psq PF05225 Domain 14 1423 43.50 28 10.70 Changed helix-turn-helix, Psq domain
HTH_Tnp_1 PF01527 Family 28 3068 75.30 20 60.20 Changed Transposase
HTH_Tnp_1_2 PF13022 Domain 6 24 114.50 17 84.27 Changed Helix-turn-helix of insertion element transposase
HTH_Tnp_4 PF13613 Domain 80 532 51.10 25 17.45 Changed Helix-turn-helix of DDE superfamily endonuclease
HTH_Tnp_IS1 PF12759 Domain 3 305 38.80 59 44.27 Changed InsA C-terminal domain
HTH_Tnp_IS630 PF01710 Domain 5 272 110.50 27 67.31 Changed Transposase
HTH_Tnp_ISL3 PF13542 Domain 162 602 51.00 19 13.38 Changed Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_Mu_1 PF02316 Family 4 114 107.20 23 27.11 Changed Mu DNA-binding domain
HTH_Tnp_Mu_2 PF09039 Domain 5 43 103.00 23 16.49 Changed Mu DNA binding, I gamma subdomain
HTH_Tnp_Tc3_1 PF11427 Family 2 266 46.60 36 27.78 Changed Tc3 transposase
HTH_Tnp_Tc3_2 PF01498 Family 24 1322 66.60 25 23.26 Changed Transposase
HTH_Tnp_Tc5 PF03221 Domain 154 2446 63.00 21 13.69 Changed Tc5 transposase DNA-binding domain
HTH_WhiA PF02650 Domain 361 729 84.10 41 27.09 Changed WhiA C-terminal HTH domain
HtrL_YibB PF09612 Family 8 62 219.40 23 55.67 Changed Bacterial protein of unknown function (HtrL_YibB)
HTS PF04204 Domain 65 606 294.20 47 95.83 Changed Homoserine O-succinyltransferase
HU-DNA_bdg PF14848 Domain 17 85 121.00 22 53.75 Changed DNA-binding domain
Humanin PF15040 Family 8 33 24.10 75 95.90 Changed Humanin family
Hum_adeno_E3A PF05393 Family 2 3 87.00 23 53.59 Changed Human adenovirus early E3A glycoprotein
HUN PF08729 Domain 46 467 50.20 41 6.37 Changed HPC2 and ubinuclein domain
HupE_UreJ PF04955 Family 49 227 178.90 33 86.51 Changed HupE / UreJ protein
HupE_UreJ_2 PF13795 Family 54 231 153.00 35 52.22 Changed HupE / UreJ protein
HupF_HypC PF01455 Family 437 665 67.00 36 72.87 Changed HupF/HypC family
HupH_C PF04809 Family 56 116 112.10 27 74.20 Changed HupH hydrogenase expression protein, C-terminal conserved region
Hus1 PF04005 Family 27 435 280.50 24 88.59 Changed Hus1-like protein
HutD PF05962 Family 64 232 172.00 25 82.79 Changed HutD
HutP PF09021 Domain 63 106 129.50 38 86.39 Changed HutP
HVSL PF09749 Family 110 378 219.50 23 77.49 Changed Uncharacterised conserved protein
HV_small_capsid PF17086 Family 1 3 75.00 53 89.29 Changed Small capsid protein of Herpesviridae
HWE_HK PF07536 Domain 42 364 82.30 31 14.66 Changed HWE histidine kinase
HxlR PF01638 Domain 13 3757 89.50 33 67.34 Changed HxlR-like helix-turn-helix
HXXEE PF13787 Family 97 139 114.00 20 62.11 Changed Protein of unknown function with HXXEE motif
HxxPF_rpt PF13745 Domain 750 3204 92.90 29 4.84 Changed HxxPF-repeated domain
HXXSHH PF07586 Family 104 131 307.40 24 67.27 Changed Protein of unknown function (DUF1552)
HyaE PF07449 Family 7 49 106.50 30 71.88 Changed Hydrogenase-1 expression protein HyaE
Hyaluronidase_1 PF07212 Family 2 7 215.30 42 70.68 Changed Hyaluronidase protein (HylP)
HycA_repressor PF11046 Family 7 19 145.90 52 94.64 Changed Transcriptional repressor of hyc and hyp operons
Hyccin PF09790 Family 31 308 282.60 34 63.05 Changed Hyccin
HycH PF07450 Family 27 48 128.40 44 91.59 Changed Formate hydrogenlyase maturation protein HycH
HycI PF01750 Domain 19 645 126.90 22 72.70 Changed Hydrogenase maturation protease
Hydantoinase_A PF01968 Family 32 1938 266.00 30 30.30 Changed Hydantoinase/oxoprolinase
Hydantoinase_B PF02538 Family 410 1337 491.50 37 52.97 Changed Hydantoinase B/oxoprolinase
Hydant_A_N PF05378 Family 43 1814 182.60 29 20.08 Changed Hydantoinase/oxoprolinase N-terminal region
Hydrolase PF00702 Domain 227 15372 240.60 21 28.85 Changed haloacid dehalogenase-like hydrolase
Hydrolase_2 PF07486 Family 474 924 104.10 30 41.20 Changed Cell Wall Hydrolase
Hydrolase_3 PF08282 Domain 66 5547 208.40 20 77.05 Changed haloacid dehalogenase-like hydrolase
Hydrolase_4 PF12146 Family 93 8638 190.10 16 56.13 Changed Serine aminopeptidase, S33
Hydrolase_6 PF13344 Domain 147 2649 104.10 25 32.00 Changed Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 Domain 152 3957 74.80 25 25.63 Changed HAD-hyrolase-like
Hydrophobin PF01185 Family 198 439 79.80 32 53.52 Changed Fungal hydrophobin
Hydrophobin_2 PF06766 Family 87 144 63.70 43 45.02 Changed Fungal hydrophobin
Hydrophob_seed PF14547 Domain 17 756 82.40 49 51.28 Changed Hydrophobic seed protein
Hyd_WA PF06462 Family 211 1137 31.00 35 13.77 Changed Propeller
HYLS1_C PF15311 Family 20 97 79.20 42 27.86 Changed Hydrolethalus syndrome protein 1 C-terminus
HypA PF01155 Domain 501 645 112.40 29 94.32 Changed Hydrogenase/urease nickel incorporation, metallochaperone, hypA
HypD PF01924 Family 330 541 346.90 44 95.26 Changed Hydrogenase formation hypA family
Hyphal_reg_CWP PF11765 Domain 73 215 299.20 27 40.14 Changed Hyphally regulated cell wall protein N-terminal
Hypoth_Ymh PF09509 Family 48 80 114.30 27 45.99 Changed Protein of unknown function (Hypoth_ymh)
HYR PF02494 Domain 13 1857 80.60 30 15.66 Changed HYR domain
Hyr1 PF15789 Repeat 17 362 42.40 54 40.23 Changed Hyphally regulated cell wall GPI-anchored protein 1
H_kinase_N PF12282 Family 89 199 144.40 31 29.53 Changed Signal transduction histidine kinase
H_lectin PF09458 Domain 177 374 66.00 22 16.59 Changed H-type lectin domain
H_PPase PF03030 Family 329 1101 626.40 43 92.24 Changed Inorganic H+ pyrophosphatase
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