Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.

Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
R-HINP1I PF11463 Family 4 41 170.50 44 78.04 Changed R.HinP1I restriction endonuclease
R2K_2 PF18299 Domain 58 219 147.00 28 59.77 New ATP-grasp domain, R2K clade family 2
R2K_3 PF14243 Domain 56 343 180.00 20 64.49 Changed ATP-grasp domain, R2K clade family 3
R3H PF01424 Domain 774 8823 60.50 24 11.67 Changed R3H domain
R3H-assoc PF13902 Domain 52 685 121.80 23 38.20 Changed R3H-associated N-terminal domain
RA PF00788 Domain 40 9270 91.00 17 10.54 Changed Ras association (RalGDS/AF-6) domain
Rab15_effector PF15208 Family 10 67 228.10 53 93.82 Changed Rab15 effector
Rab3-GTPase_cat PF13890 Family 46 851 146.50 42 18.98 Changed Rab3 GTPase-activating protein catalytic subunit
RAB3GAP2_C PF14656 Family 27 461 398.90 27 41.17 Changed Rab3 GTPase-activating protein regulatory subunit C-terminus
RAB3GAP2_N PF14655 Family 40 689 319.80 26 36.91 Changed Rab3 GTPase-activating protein regulatory subunit N-terminus
Rab5-bind PF09311 Family 5 611 218.00 32 44.64 Changed Rabaptin-like protein
Rab5ip PF07019 Family 177 1438 82.40 27 52.56 Changed Rab5-interacting protein (Rab5ip)
Rabaptin PF03528 Family 3 420 260.10 40 45.53 Changed Rabaptin
RabGAP-TBC PF00566 Family 71 23120 196.30 19 29.00 Changed Rab-GTPase-TBC domain
RabGGT_insert PF07711 Domain 13 94 96.00 52 18.47 Changed Rab geranylgeranyl transferase alpha-subunit, insert domain
Rab_bind PF16704 Domain 4 252 61.90 54 5.18 Changed Rab binding domain
Rab_eff_C PF04698 Family 8 406 356.10 35 61.16 Changed Rab effector MyRIP/melanophilin C-terminus
Rac1 PF09632 Domain 3 4 294.20 49 40.36 Changed Rac1-binding domain
RACo_C_ter PF14574 Family 170 1640 250.50 35 42.95 Changed C-terminal domain of RACo the ASKHA domain
RACo_linker PF17650 Family 224 946 88.90 27 13.96 New RACo linker region
Raco_middle PF17651 Family 121 1601 159.40 33 26.82 New RACo middle region
RAC_head PF16717 Domain 77 778 94.00 33 17.97 Changed Ribosome-associated complex head domain
Rad1 PF02144 Family 23 1121 247.90 26 75.59 Changed Repair protein Rad1/Rec1/Rad17
Rad10 PF03834 Family 125 1105 110.10 46 33.53 Changed Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Rad17 PF03215 Domain 3 1205 166.60 25 24.59 Changed Rad17 P-loop domain
Rad21_Rec8 PF04824 Family 14 1985 52.20 29 7.85 Changed Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 Family 117 2412 105.50 35 15.73 Changed N terminus of Rad21 / Rec8 like protein
Rad33 PF08730 Family 12 63 103.50 26 49.30 Changed Rad33
Rad4 PF03835 Domain 29 1953 139.30 23 16.86 Changed Rad4 transglutaminase-like domain
Rad50_zn_hook PF04423 Motif 56 676 50.70 22 4.63 Changed Rad50 zinc hook motif
Rad51 PF08423 Domain 22 6057 224.20 27 68.61 Changed Rad51
RAD51_interact PF15696 Family 21 194 38.30 50 8.70 Changed RAD51 interacting motif
Rad52_Rad22 PF04098 Family 34 1265 139.50 34 36.95 Changed Rad52/22 family double-strand break repair protein
Rad54_N PF08658 Family 85 558 170.40 36 20.07 Changed Rad54 N terminal
Rad60-SLD PF11976 Family 33 3350 68.90 31 33.19 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD_2 PF13881 Domain 20 1354 106.60 28 58.72 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad9 PF04139 Family 11 1288 237.20 23 56.41 Changed Rad9
Rad9_Rad53_bind PF08605 Family 7 120 136.90 31 10.83 Changed Fungal Rad9-like Rad53-binding
RadC PF04002 Family 971 7688 118.70 35 53.64 Changed RadC-like JAB domain
Radial_spoke PF04712 Family 45 935 290.80 20 76.09 Changed Radial spokehead-like protein
Radial_spoke_3 PF06098 Family 51 501 253.90 35 56.99 Changed Radial spoke protein 3
Radical_SAM PF04055 Domain 518 122015 169.10 14 42.15 Changed Radical SAM superfamily
Radical_SAM_C PF16199 Family 612 4314 83.80 29 20.04 Changed Radical_SAM C-terminal domain
Radical_SAM_N PF08497 Family 314 2008 317.80 50 47.80 Changed Radical SAM N-terminal
Raf1_HTH PF18579 Domain 79 236 60.80 45 15.59 New Rubisco accumulation factor 1 helix turn helix domain
Raf1_N PF18578 Domain 77 240 105.80 42 27.25 New Rubisco accumulation factor 1 alpha helical domain
Raffinose_syn PF05691 Family 4 1877 439.70 28 74.35 Changed Raffinose synthase or seed imbibition protein Sip1
Raftlin PF15250 Family 18 355 343.60 41 82.57 Changed Raftlin
RAG1 PF12940 Family 2 119 601.80 80 62.82 Changed Recombination-activation protein 1 (RAG1), recombinase
RAG1_imp_bd PF12560 Family 18 118 257.70 47 27.18 Changed RAG1 importin binding
RAG2 PF03089 Family 11 113 316.70 64 61.31 Changed Recombination activating protein 2
RAG2_PHD PF13341 Domain 8 104 78.00 76 15.02 Changed RAG2 PHD domain
RAI1 PF08652 Family 127 1040 73.00 37 18.29 Changed RAI1 like PD-(D/E)XK nuclease
RAI16-like PF10257 Family 20 1385 347.90 26 40.97 Changed Retinoic acid induced 16-like protein
Ral PF11058 Family 2 15 62.90 86 100.00 Changed Antirestriction protein Ral
RALF PF05498 Family 60 1288 61.30 39 51.39 Changed Rapid ALkalinization Factor (RALF)
RalF_SCD PF18248 Domain 3 9 149.10 47 29.44 New RalF C-terminal Sec-7 capping domain
RAM PF15320 Family 31 218 82.10 34 59.51 Changed mRNA cap methylation, RNMT-activating mini protein
RAMA PF18755 Domain 142 1559 114.10 30 23.88 New Restriction Enzyme Adenine Methylase Associated
RAMP PF04901 Family 57 350 105.00 39 68.02 Changed Receptor activity modifying family
RAMP4 PF06624 Family 65 981 58.50 36 60.78 Changed Ribosome associated membrane protein RAMP4
RAMPs PF03787 Family 150 3016 237.00 14 66.84 Changed RAMP superfamily
Ran-binding PF05508 Family 81 419 319.30 43 54.59 Changed RanGTP-binding protein
RanGAP1_C PF07834 Domain 14 223 171.70 40 31.23 Changed RanGAP1 C-terminal domain
RANK_CRD_2 PF18278 Domain 5 132 40.90 75 9.01 New Receptor activator of the NF-KB cysteine-rich repeat domain 2
Ran_BP1 PF00638 Family 8 4764 114.60 30 22.36 Changed RanBP1 domain
RAP PF08373 Domain 70 1839 59.40 24 8.14 Changed RAP domain
RAP-1 PF03085 Family 6 34 225.70 22 71.47 Changed Rhoptry-associated protein 1 (RAP-1)
RAP1 PF07218 Family 2 35 604.90 48 96.94 Changed Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind PF09197 Domain 15 77 110.70 36 16.97 Changed Rap1, DNA-binding
Rap1a PF18602 Domain 21 160 69.50 27 54.48 New Rap1a immunity proteins
Rap1_C PF11626 Family 78 466 86.80 27 13.49 Changed TRF2-interacting telomeric protein/Rap1 - C terminal domain
RAP80_UIM PF18282 Domain 3 132 55.70 82 8.19 New RAP80 N-terminal ubiquitin interaction motif
RapA_C PF12137 Domain 81 882 348.20 36 38.01 Changed RNA polymerase recycling family C-terminal
RapH_N PF18801 Family 88 226 61.20 31 17.04 New response regulator aspartate phosphatase H, N terminal
Rapsyn_N PF10579 Family 3 276 78.10 45 16.15 Changed Rapsyn N-terminal myristoylation and linker region
Raptor_N PF14538 Domain 63 1303 146.40 56 10.93 Changed Raptor N-terminal CASPase like domain
Rap_GAP PF02145 Family 249 3743 178.00 34 14.26 Changed Rap/ran-GAP
Ras PF00071 Domain 60 62266 152.00 28 59.14 Changed Ras family
RasGAP PF00616 Family 51 7151 133.50 21 13.06 Changed GTPase-activator protein for Ras-like GTPase
RasGAP_C PF03836 Family 121 1549 131.80 31 10.29 Changed RasGAP C-terminus
RasGEF PF00617 Family 706 10174 182.70 24 18.39 Changed RasGEF domain
RasGEF_N PF00618 Domain 53 6993 106.40 22 9.83 Changed RasGEF N-terminal motif
RasGEF_N_2 PF14663 Domain 80 1000 107.30 39 7.73 Changed Rapamycin-insensitive companion of mTOR RasGEF_N domain
Ras_bdg_2 PF14847 Domain 48 525 104.90 36 11.09 Changed Ras-binding domain of Byr2
Rav1p_C PF12234 Family 66 1895 424.60 21 27.47 Changed RAVE protein 1 C terminal
RAWUL PF16207 Domain 62 1300 70.90 36 16.36 Changed RAWUL domain RING finger- and WD40-associated ubiquitin-like
Rax2 PF12768 Family 74 529 207.00 31 16.43 Changed Cortical protein marker for cell polarity
RBB1NT PF08169 Domain 36 417 94.10 45 7.20 Changed RBB1NT (NUC162) domain
RbcS PF12338 Family 10 320 39.20 55 21.03 Changed Ribulose-1,5-bisphosphate carboxylase small subunit
RBD PF02196 Domain 74 1704 69.00 27 8.68 Changed Raf-like Ras-binding domain
RBD-FIP PF09457 Motif 10 1175 44.10 37 6.83 Changed FIP domain
RBDV_coat PF06593 Family 1 3 267.00 38 98.40 Changed Raspberry bushy dwarf virus coat protein
RBFA PF02033 Family 885 7943 104.80 30 74.20 Changed Ribosome-binding factor A
RBM1CTR PF08081 Family 10 270 44.90 71 12.07 Changed RBM1CTR (NUC064) family
RBM39linker PF15519 Domain 96 1370 85.40 33 15.99 Changed linker between RRM2 and RRM3 domains in RBM39 protein
RbpA PF13397 Family 58 1912 102.20 46 89.02 Changed RNA polymerase-binding protein
RBP_receptor PF14752 Family 32 462 396.20 26 74.59 Changed Retinol binding protein receptor
RBR PF17208 Family 54 437 55.70 41 10.18 Changed RNA binding Region
RbsD_FucU PF05025 Family 298 2696 133.90 31 96.10 Changed RbsD / FucU transport protein family
Rbsn PF11464 Domain 107 898 41.90 38 7.51 Changed Rabenosyn Rab binding domain
Rbx_binding PF18113 Domain 48 562 70.80 36 18.07 New Rubredoxin binding C-terminal domain
RB_A PF01858 Domain 73 1046 190.30 37 21.09 Changed Retinoblastoma-associated protein A domain
RB_B PF01857 Domain 88 1016 141.40 39 15.47 Changed Retinoblastoma-associated protein B domain
Rb_C PF08934 Domain 7 335 121.60 38 13.29 Changed Rb C-terminal domain
RC-P840_PscD PF10657 Family 6 15 138.10 62 99.04 Changed Photosystem P840 reaction centre protein PscD
RcbX PF02341 Family 31 446 104.70 37 57.10 Changed RbcX protein
RCC1 PF00415 Repeat 101 51872 51.70 29 20.69 Changed Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 Repeat 181 11522 29.70 34 5.91 Changed Regulator of chromosome condensation (RCC1) repeat
RCC_reductase PF06405 Family 15 204 222.90 39 76.97 Changed Red chlorophyll catabolite reductase (RCC reductase)
Rcd1 PF04078 Family 62 1677 228.90 57 71.87 Changed Cell differentiation family, Rcd1-like
RCDG1 PF15725 Family 3 48 75.00 71 73.30 Changed Renal cancer differentiation gene 1 protein
RcnB PF11776 Family 83 1415 50.10 30 29.75 Changed Nickel/cobalt transporter regulator
RcpB PF16971 Family 4 18 144.40 23 93.90 Changed Rough colony protein B, tight adherence - tad - subunit
RcpC PF16976 Family 153 2869 111.30 27 40.16 Changed Flp pilus assembly protein RcpC/CpaB
RCR PF12273 Family 52 608 128.00 25 67.21 Changed Chitin synthesis regulation, resistance to Congo red
RCS1 PF07326 Family 16 201 166.50 43 91.71 Changed Regulator of chromosome segregation 1
RcsC PF09456 Domain 20 131 91.00 37 9.77 Changed RcsC Alpha-Beta-Loop (ABL)
RCSD PF05177 Family 8 158 85.60 45 9.38 Changed RCSD region
RcsD_ABL PF16359 Domain 16 128 103.10 46 11.75 Changed RcsD-ABL domain
RcsF PF16358 Family 13 200 105.90 40 81.33 Changed RcsF lipoprotein
RD3 PF14473 Family 35 286 127.00 40 64.26 Changed RD3 protein
RDD PF06271 Family 61 10836 133.90 18 57.51 Changed RDD family
RdDM_RDM1 PF09187 Domain 13 129 111.80 58 63.77 Changed RNA-directed DNA methylation 1
RdgC PF04381 Family 120 1534 282.20 32 93.68 Changed Putative exonuclease, RdgC
RDM PF11002 Domain 19 85 41.90 62 13.57 Changed RFPL defining motif (RDM)
RdRP PF05183 Family 282 3265 484.90 23 47.64 Changed RNA dependent RNA polymerase
RdRP_1 PF00680 Family 12 704 401.10 16 18.36 Changed RNA dependent RNA polymerase
RdRP_2 PF00978 Family 36 367 376.60 19 22.94 Changed RNA dependent RNA polymerase
RdRP_3 PF00998 Family 32 203 422.80 25 56.61 Changed Viral RNA dependent RNA polymerase
RdRP_4 PF02123 Family 28 200 383.00 17 42.99 Changed Viral RNA-directed RNA-polymerase
RdRP_5 PF07925 Family 3 16 1179.20 43 99.35 Changed Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3 PF09231 Family 2 4 962.00 31 94.69 Changed Rice dwarf virus p3
Rdx PF10262 Family 263 2635 87.90 32 59.62 Changed Rdx family
Read-through PF16814 Domain 1 3 183.30 54 55.61 Changed Read-through domain
RebB PF11747 Family 33 635 66.00 39 66.32 Changed Killing trait
REC1 PF18501 Domain 14 36 251.40 29 20.29 New Alpha helical recognition lobe domain
REC104 PF17378 Family 3 11 178.20 84 99.14 Changed Meiotic recombination protein REC104
REC114-like PF15165 Family 13 202 158.60 35 87.64 Changed Meiotic recombination protein REC114-like
RecA PF00154 Family 15 9170 252.20 62 71.95 Changed recA bacterial DNA recombination protein
RecA_dep_nuc PF16786 Domain 3 59 93.20 28 75.99 Changed Recombination enhancement, RecA-dependent nuclease
RecC_C PF17946 Domain 178 1542 232.30 22 20.98 New RecC C-terminal domain
Receptor_2B4 PF11465 Domain 3 119 98.50 29 32.95 Changed Natural killer cell receptor 2B4
Receptor_IA-2 PF11548 Family 27 314 83.40 40 9.03 Changed Protein-tyrosine phosphatase receptor IA-2
Recep_L_domain PF01030 Domain 52 4669 111.70 24 21.29 Changed Receptor L domain
RecG_N PF17190 Domain 8 16 86.10 32 11.04 Changed RecG N-terminal helical domain
RecG_wedge PF17191 Domain 7 6490 162.90 24 23.35 Changed RecG wedge domain
RecJ_OB PF17768 Domain 775 6499 107.20 25 17.47 New RecJ OB domain
Recombinase PF07508 Domain 67 10239 104.20 22 21.50 Changed Recombinase
RecO_C PF02565 Family 102 7112 143.80 18 58.82 Changed Recombination protein O C terminal
RecO_N PF11967 Domain 103 7486 78.60 24 32.44 Changed Recombination protein O N terminal
RecO_N_2 PF13114 Domain 13 88 71.30 50 33.81 Changed RecO N terminal
RecQ5 PF06959 Family 13 133 185.90 38 20.61 Changed RecQ helicase protein-like 5 (RecQ5)
RecQ_Zn_bind PF16124 Domain 815 10996 66.50 27 9.19 Changed RecQ zinc-binding
RecR PF02132 Family 914 7386 39.80 34 19.87 Changed RecR protein
RecT PF03837 Family 73 1181 189.80 17 64.10 Changed RecT family
RecU PF03838 Domain 202 1152 160.10 40 83.75 Changed Recombination protein U
RecX PF02631 Family 100 6593 122.90 21 65.75 Changed RecX family
Red1 PF07964 Family 10 45 436.80 19 72.17 Changed Rec10 / Red1
Redoxin PF08534 Domain 53 15735 143.50 18 68.76 Changed Redoxin
Reductase_C PF14759 Domain 77 5069 81.60 27 19.12 Changed Reductase C-terminal
RED_C PF07807 Family 17 509 107.00 54 18.76 Changed RED-like protein C-terminal region
RED_N PF07808 Family 30 1055 185.20 26 35.00 Changed RED-like protein N-terminal region
Reeler PF02014 Family 159 1572 123.00 22 20.00 Changed Reeler domain
REF PF05755 Family 29 371 181.00 40 75.19 Changed Rubber elongation factor protein (REF)
REGB_T4 PF10715 Domain 1 27 146.70 51 98.09 Changed T4-page Endoribonuclease RegB
Regnase_1_C PF18561 Domain 9 392 44.80 49 6.29 New Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Regulator_TrmB PF11495 Family 25 878 165.60 15 55.51 Changed Archaeal transcriptional regulator TrmB
Reg_prop PF07494 Repeat 659 20697 23.90 33 6.92 Changed Two component regulator propeller
REJ PF02010 Family 23 1337 332.10 14 17.41 Changed REJ domain
Relaxase PF03432 Family 17 3949 222.90 14 49.48 Changed Relaxase/Mobilisation nuclease domain
RelA_SpoT PF04607 Family 93 13787 115.50 39 19.08 Changed Region found in RelA / SpoT proteins
RelB PF04221 Domain 6 2807 80.50 21 86.02 Changed RelB antitoxin
RelB_leu_zip PF16180 Domain 5 50 77.20 68 15.37 Changed RelB leucine zipper
RelB_N PF18506 Domain 32 85 46.40 40 66.97 New RelB Antitoxin alpha helical domain
RelB_transactiv PF16181 Domain 3 66 160.50 74 30.33 Changed RelB transactivation domain
RelE PF06296 Family 22 1035 103.70 25 90.71 Changed RelE toxin of RelE / RelB toxin-antitoxin system
RELT PF12606 Family 17 316 41.20 60 13.72 Changed Tumour necrosis factor receptor superfamily member 19
Remorin_C PF03763 Family 105 1873 101.30 33 29.16 Changed Remorin, C-terminal region
Remorin_N PF03766 Family 21 323 55.00 43 28.85 Changed Remorin, N-terminal region
Renin_r PF07850 Family 31 407 96.60 39 20.90 Changed Renin receptor-like protein
Reoviridae_Vp9 PF08978 Domain 2 4 242.00 27 86.89 Changed Reoviridae VP9
Reovirus_cap PF00979 Family 5 7 329.10 26 88.01 Changed Reovirus outer capsid protein, Sigma 3
Reovirus_L2 PF06016 Family 3 16 1289.60 28 99.88 Changed Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2 PF05993 Family 3 16 654.80 31 98.96 Changed Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2 PF07781 Family 3 16 682.90 24 93.38 Changed Reovirus minor core protein Mu-2
Reo_P9 PF06043 Family 1 5 322.00 56 99.88 Changed Reovirus P9-like family
Reo_sigma1 PF01664 Family 3 1 219.00 100 46.60 Changed Reovirus viral attachment protein sigma 1
Reo_sigmaC PF04582 Domain 4 2 130.50 28 40.34 Changed Reovirus sigma C capsid protein C-terminal domain
Reo_sigmaC_M PF17750 Family 4 1 40.00 100 12.27 New Reovirus sigma C capsid protein triple beta spiral
Rep-A_N PF04057 Domain 11 1328 98.00 28 16.19 Changed Replication factor-A protein 1, N-terminal domain
RepA1_leader PF08048 Family 5 7 24.00 65 77.78 Changed Tap RepA1 leader peptide
RepA_C PF04796 Family 3 327 157.40 30 47.85 Changed Plasmid encoded RepA protein
RepA_N PF06970 Family 20 764 74.40 38 29.54 Changed Replication initiator protein A (RepA) N-terminus
REPA_OB_2 PF16900 Domain 113 2107 97.80 29 16.71 Changed Replication protein A OB domain
RepB PF07506 Family 15 1172 168.80 20 53.34 Changed RepB plasmid partitioning protein
RepB-RCR_reg PF10723 Domain 3 59 72.60 27 84.88 Changed Replication regulatory protein RepB
RepB_primase PF16793 Domain 12 186 178.30 16 34.28 Changed RepB DNA-primase from phage plasmid
RepC PF06504 Family 5 53 264.00 35 89.69 Changed Replication protein C (RepC)
RepL PF05732 Family 4 189 113.40 19 67.38 Changed Firmicute plasmid replication protein (RepL)
Replicase PF03090 Family 19 155 122.70 29 36.80 Changed Replicase family
Replic_Relax PF13814 Family 33 740 178.10 18 61.73 Changed Replication-relaxation
Repressor_Mnt PF11423 Family 2 8 27.90 69 31.45 Changed Regulatory protein Mnt
Reprolysin PF01421 Domain 19 6219 187.20 28 20.99 Changed Reprolysin (M12B) family zinc metalloprotease
Reprolysin_2 PF13574 Domain 6 670 192.90 35 25.98 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_3 PF13582 Domain 28 521 121.70 19 19.22 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_4 PF13583 Domain 4 1120 188.90 23 21.60 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_5 PF13688 Family 47 1654 199.70 19 26.17 Changed Metallo-peptidase family M12
Rep_1 PF01446 Family 20 244 195.20 21 64.37 Changed Replication protein
Rep_1B PF17873 Domain 1 1 53.00 100 1.67 New Replicase polyprotein 1ab
Rep_2 PF01719 Family 10 165 169.30 22 63.76 Changed Plasmid replication protein
Rep_3 PF01051 Family 163 1860 216.20 17 62.37 Changed Initiator Replication protein
Rep_4 PF05797 Family 2 6 308.30 63 88.31 Changed Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3 PF08661 Domain 20 1077 104.40 23 80.14 Changed Replication factor A protein 3
Rep_fac-A_C PF08646 Family 29 2952 137.30 23 25.24 Changed Replication factor-A C terminal domain
Rep_fac_C PF08542 Domain 353 3975 86.90 22 24.26 Changed Replication factor C C-terminal domain
Rep_N PF08724 Domain 9 7 177.30 30 30.88 Changed Rep protein catalytic domain like
Rep_Org_C PF06926 Family 3 19 92.70 54 36.44 Changed Putative replisome organiser protein C-terminus
Rep_trans PF02486 Family 44 591 185.50 23 51.26 Changed Replication initiation factor
Requiem_N PF14051 Family 31 684 69.90 61 17.51 Changed N-terminal domain of DPF2/REQ.
Rer1 PF03248 Family 125 1507 156.50 53 79.47 Changed Rer1 family
RES PF08808 Domain 180 3459 156.40 17 72.98 Changed RES domain
ResB PF05140 Family 209 4499 301.90 17 62.87 Changed ResB-like family
ResIII PF04851 Family 52 30351 162.50 19 20.64 Changed Type III restriction enzyme, res subunit
Resistin PF06954 Family 32 104 78.30 50 59.84 Changed Resistin
Resolvase PF00239 Domain 125 20114 137.80 23 40.45 Changed Resolvase, N terminal domain
RESP18 PF14948 Family 15 239 90.70 33 11.87 Changed RESP18 domain
Response_reg PF00072 Domain 52 342025 112.30 25 29.92 Changed Response regulator receiver domain
RestrictionMunI PF11407 Family 3 15 162.50 50 97.13 Changed Type II restriction enzyme MunI
RestrictionSfiI PF11487 Family 5 11 198.20 48 87.90 Changed Type II restriction enzyme SfiI
Ret2_MD PF18528 Domain 5 18 93.20 73 18.58 New RNA editing 3' terminal uridylyl transferase 2 middle domain
RETICULATA-like PF11891 Family 44 1030 163.00 36 37.57 Changed Protein RETICULATA-related
Reticulon PF02453 Family 235 3778 151.40 25 42.35 Changed Reticulon
Retinal PF15449 Family 18 161 813.80 35 97.09 Changed Retinal protein
Retinin_C PF04527 Family 15 321 70.60 42 48.69 Changed Drosophila Retinin like protein
Retrotrans_gag PF03732 Family 55 10368 93.20 17 19.64 Changed Retrotransposon gag protein
Retrotran_gag_2 PF14223 Family 69 13980 114.40 16 34.30 Changed gag-polypeptide of LTR copia-type
Retrotran_gag_3 PF14244 Family 17 1979 44.20 32 12.56 Changed gag-polypeptide of LTR copia-type
Retro_M PF02813 Family 1 3 86.00 71 7.52 Changed Retroviral M domain
RET_CLD1 PF17756 Domain 22 136 122.80 56 12.04 New RET Cadherin like domain 1
RET_CLD3 PF17812 Domain 16 133 115.00 63 11.21 New RET Cadherin like domain 3
RET_CLD4 PF17813 Domain 27 133 104.10 55 10.06 New RET Cadherin like domain 4
REV PF00424 Family 2 24 91.00 53 82.60 Changed REV protein (anti-repression trans-activator protein)
REV1_C PF16727 Domain 207 676 91.60 27 8.03 Changed DNA repair protein REV1 C-terminal domain
RexA PF15969 Family 4 13 184.80 50 84.40 Changed Intracellular sensor of Lambda phage, Abi component
RexB PF15968 Family 1 7 132.40 73 97.17 Changed Membrane-anchored ion channel, Abi component
RE_AccI PF09545 Family 3 37 219.90 26 88.97 Changed AccI restriction endonuclease
RE_Alw26IDE PF09665 Family 8 22 352.00 37 91.58 Changed Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI PF09491 Family 6 250 350.20 17 73.45 Changed AlwI restriction endonuclease
RE_ApaLI PF09499 Family 3 38 131.30 53 87.88 Changed ApaLI-like restriction endonuclease
RE_AspBHI_N PF18062 Domain 17 98 180.60 29 47.59 New Restriction endonuclease AspBHI N-terminal
RE_Bpu10I PF09549 Family 8 54 166.80 30 71.25 Changed Bpu10I restriction endonuclease
RE_BsaWI PF18643 Domain 23 86 100.50 27 41.78 New BsaWI restriction endonuclease type 2
RE_Bsp6I PF09504 Family 3 21 168.00 28 93.04 Changed Bsp6I restriction endonuclease
RE_BstXI PF09552 Family 2 13 241.60 40 69.99 Changed BstXI restriction endonuclease
RE_CfrBI PF09516 Family 3 50 217.50 40 78.31 Changed CfrBI restriction endonuclease
RE_Eco29kI PF09517 Family 14 122 152.50 37 67.85 Changed Eco29kI restriction endonuclease
RE_Eco47II PF09553 Family 17 105 196.90 38 80.37 Changed Eco47II restriction endonuclease
RE_EcoO109I PF14511 Family 17 178 189.10 31 72.85 Changed Type II restriction endonuclease EcoO109I
RE_HaeII PF09554 Family 3 35 300.60 50 92.22 Changed HaeII restriction endonuclease
RE_HaeIII PF09556 Family 12 55 266.30 39 88.44 Changed HaeIII restriction endonuclease
RE_HindIII PF09518 Family 4 27 270.90 36 94.62 Changed HindIII restriction endonuclease
RE_HindVP PF09519 Family 13 58 264.60 40 92.18 Changed HindVP restriction endonuclease
RE_HpaII PF09561 Family 24 142 313.70 35 90.84 Changed HpaII restriction endonuclease
RE_LlaJI PF09563 Family 3 143 308.80 20 73.48 Changed LlaJI restriction endonuclease
RE_LlaMI PF09562 Family 3 6 221.80 45 94.87 Changed LlaMI restriction endonuclease
RE_MamI PF09567 Family 4 20 208.80 36 68.88 Changed MamI restriction endonuclease
RE_MjaI PF09568 Family 16 133 160.00 32 81.03 Changed MjaI restriction endonuclease
RE_NgoBV PF09564 Family 2 26 200.70 37 95.50 Changed NgoBV restriction endonuclease
RE_NgoFVII PF09565 Domain 17 190 210.10 16 60.54 Changed NgoFVII restriction endonuclease
RE_NgoPII PF09521 Family 11 50 246.80 43 92.69 Changed NgoPII restriction endonuclease
RE_R_Pab1 PF09522 Domain 2 20 112.50 38 51.26 Changed R.Pab1 restriction endonuclease
RE_SacI PF09566 Family 8 57 240.90 18 68.16 Changed SacI restriction endonuclease
RE_ScaI PF09569 Family 4 25 169.80 41 87.61 Changed ScaI restriction endonuclease
RE_SinI PF09570 Family 2 31 201.20 36 85.18 Changed SinI restriction endonuclease
RE_TaqI PF09573 Family 6 23 179.20 37 93.13 Changed TaqI restriction endonuclease
RE_TdeIII PF09520 Family 20 187 218.80 27 88.55 Changed Type II restriction endonuclease, TdeIII
RE_XamI PF09572 Family 7 71 228.60 33 78.66 Changed XamI restriction endonuclease
RE_XcyI PF09571 Family 3 20 229.20 27 80.94 Changed XcyI restriction endonuclease
RF-1 PF00472 Family 1050 23399 114.00 37 37.69 Changed RF-1 domain
RF3_C PF16658 Domain 318 5086 128.60 39 24.40 Changed Class II release factor RF3, C-terminal domain
RFamide_26RFa PF11109 Family 16 54 117.60 51 85.39 Changed Orexigenic neuropeptide Qrfp/P518
RFC1 PF08519 Domain 161 1324 149.20 36 16.44 Changed Replication factor RFC1 C terminal domain
Rft-1 PF04506 Family 34 1348 419.50 26 90.06 Changed Rft protein
RFX1_trans_act PF04589 Family 17 511 130.50 46 19.47 Changed RFX1 transcription activation region
RFX5_DNA_bdg PF14621 Domain 11 49 213.60 74 34.23 Changed RFX5 DNA-binding domain
RFX5_N PF18326 Domain 3 219 54.20 62 6.91 New RFX5 N-terminal domain
RFXA_RFXANK_bdg PF15289 Domain 7 109 114.20 53 54.36 Changed Regulatory factor X-associated C-terminal binding domain
RFX_DNA_binding PF02257 Domain 77 2340 77.00 43 8.84 Changed RFX DNA-binding domain
RGCC PF15151 Family 9 129 113.70 57 74.76 Changed Response gene to complement 32 protein family
RGI1 PF10843 Family 10 88 163.30 45 93.38 Changed Respiratory growth induced protein 1
RGI_lyase PF18370 Domain 83 977 86.40 37 10.47 New Rhamnogalacturonan I lyases beta-sheet domain
RGM_C PF06534 Family 42 513 164.50 47 40.80 Changed Repulsive guidance molecule (RGM) C-terminus
RGM_N PF06535 Family 32 479 163.70 51 40.19 Changed Repulsive guidance molecule (RGM) N-terminus
RGP PF03214 Family 11 703 294.40 54 89.18 Changed Reversibly glycosylated polypeptide
Rgp1 PF08737 Family 76 1274 262.70 21 51.64 Changed Rgp1
RgpF PF05045 Family 20 758 278.10 16 44.31 Changed Rhamnan synthesis protein F
RGS PF00615 Domain 61 11466 122.30 21 22.80 Changed Regulator of G protein signaling domain
RGS-like PF09128 Domain 7 770 173.70 35 14.31 Changed Regulator of G protein signalling-like domain
RGS12_us1 PF16613 Disordered 9 190 114.10 66 10.19 Changed Unstructured region of RGS12
RGS12_us2 PF16611 Disordered 6 124 73.50 71 6.36 Changed Unstructured region between RBD and GoLoco
RGS12_usC PF16612 Disordered 11 157 131.90 38 11.27 Changed C-terminal unstructured region of RGS12
RGS_DHEX PF18148 Domain 4 1175 97.70 56 18.91 New Regulator of G-protein signalling DHEX domain
Rh5 PF18515 Coiled-coil 18 89 197.70 22 22.93 New Rh5 coiled-coil domain
RhaA PF06134 Domain 5 920 365.10 39 90.06 Changed L-rhamnose isomerase (RhaA)
Rhabdo_glycop PF00974 Family 4 125 456.10 17 82.71 Changed Rhabdovirus spike glycoprotein
Rhabdo_M1 PF03342 Family 1 3 205.00 35 91.52 Changed Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2 PF04785 Family 2 7 202.00 80 99.30 Changed Rhabdovirus matrix protein M2
Rhabdo_matrix PF03397 Family 1 3 168.00 41 86.15 Changed Rhabdovirus matrix protein
Rhabdo_ncap PF00945 Family 3 189 336.50 22 83.33 Changed Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2 PF03216 Family 17 74 268.80 13 64.23 Changed Rhabdovirus nucleoprotein
Rhabdo_NV PF02484 Family 1 1 111.00 100 100.00 Changed Rhabdovirus Non-virion protein
rhaM PF05336 Domain 302 3146 103.70 28 80.77 Changed L-rhamnose mutarotase
Rhamnogal_lyase PF06045 Family 4 855 170.80 44 30.21 Changed Rhamnogalacturonate lyase family
Rhamno_transf PF11316 Family 11 440 216.20 23 73.07 Changed Putative rhamnosyl transferase
RhaT PF06379 Family 2 619 330.00 37 98.43 Changed L-rhamnose-proton symport protein (RhaT)
RHD3 PF05879 Family 8 1907 470.50 29 62.42 Changed Root hair defective 3 GTP-binding protein (RHD3)
RHD_dimer PF16179 Domain 55 1834 99.40 36 11.80 Changed Rel homology dimerisation domain
RHD_DNA_bind PF00554 Domain 21 1957 159.90 35 19.94 Changed Rel homology DNA-binding domain
RhgB_N PF09284 Domain 59 499 237.70 43 45.86 Changed Rhamnogalacturonan lyase B, N-terminal
RHH_1 PF01402 Domain 32 6771 38.40 23 37.67 Changed Ribbon-helix-helix protein, copG family
RHH_3 PF12651 Domain 15 349 41.80 25 45.40 Changed Ribbon-helix-helix domain
RHH_4 PF13467 Domain 144 1718 66.20 37 67.84 Changed Ribbon-helix-helix domain
RHH_5 PF07878 Domain 17 413 40.80 26 55.34 Changed CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
RHH_6 PF16762 Domain 11 82 74.80 46 89.83 Changed Ribbon-helix-helix domain
RHH_7 PF16777 Domain 3 14 71.50 29 89.86 Changed Transcriptional regulator, RHH-like, CopG
RHH_8 PF17723 Domain 11 364 113.90 55 85.07 New Ribbon-Helix-Helix transcriptional regulator family
RHIM PF12721 Family 31 332 52.70 23 9.84 Changed RIP homotypic interaction motif
RHINO PF15319 Family 22 113 230.60 40 96.96 Changed RAD9, RAD1, HUS1-interacting nuclear orphan protein
RhlB PF12300 Family 2 55 159.10 45 29.27 Changed ATP-dependent RNA helicase RhlB
Rhodanese PF00581 Domain 142 62647 104.40 20 42.97 Changed Rhodanese-like domain
Rhodanese_C PF12368 Family 179 2200 67.50 36 17.82 Changed Rhodanase C-terminal
RhodobacterPufX PF11511 Family 5 37 65.60 36 85.11 Changed Intrinsic membrane protein PufX
Rhodopsin_N PF10413 Domain 5 210 35.80 83 10.26 Changed Amino terminal of the G-protein receptor rhodopsin
RhoGAP PF00620 Domain 85 23184 146.30 25 17.02 Changed RhoGAP domain
RhoGAP-FF1 PF16512 Domain 27 452 79.20 42 5.43 Changed p190-A and -B Rho GAPs FF domain
RhoGEF PF00621 Domain 171 22466 175.60 21 15.76 Changed RhoGEF domain
RhoGEF67_u1 PF16615 Disordered 15 304 46.80 45 6.28 Changed Unstructured region one on RhoGEF 6 and 7
RhoGEF67_u2 PF16614 Disordered 5 419 100.30 76 13.90 Changed Unstructured region two on RhoGEF 6 and 7
Rhomboid PF01694 Family 61 19178 149.30 22 47.75 Changed Rhomboid family
Rhomboid_N PF12122 Domain 21 369 84.60 33 30.19 Changed Cytoplasmic N-terminal domain of rhomboid serine protease
Rhomboid_SP PF12595 Family 11 266 198.80 61 25.34 Changed Rhomboid serine protease
Rho_Binding PF08912 Domain 42 474 67.30 51 5.23 Changed Rho Binding
Rho_GDI PF02115 Domain 39 1691 179.90 38 84.10 Changed RHO protein GDP dissociation inhibitor
Rho_N PF07498 Family 112 7413 41.00 33 9.48 Changed Rho termination factor, N-terminal domain
Rho_RNA_bind PF07497 Domain 302 6817 74.90 51 15.16 Changed Rho termination factor, RNA-binding domain
RHS PF03527 Family 31 1091 36.40 35 3.55 Changed RHS protein
RHSP PF07999 Family 3 956 296.60 29 57.36 Changed Retrotransposon hot spot protein
RHS_repeat PF05593 Repeat 202 20155 37.70 29 9.28 Changed RHS Repeat
Rhv PF00073 Domain 49 285 139.20 15 10.12 Changed picornavirus capsid protein
Rib PF08428 Domain 10 1155 69.30 25 19.46 Changed Rib/alpha-like repeat
RIB43A PF05914 Family 66 494 297.90 30 91.38 Changed RIB43A
RibD_C PF01872 Family 27 19260 186.30 20 72.42 Changed RibD C-terminal domain
RIBIOP_C PF04950 Family 217 2558 277.90 34 30.77 Changed 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Ribonuclease PF00545 Domain 152 1906 84.80 34 50.80 Changed ribonuclease
Ribonuclease_3 PF00636 Family 230 7986 117.10 24 20.27 Changed Ribonuclease III domain
Ribonuclease_P PF00825 Family 96 7209 108.40 25 88.11 Changed Ribonuclease P
Ribonuclease_T2 PF00445 Domain 218 3671 177.00 22 62.61 Changed Ribonuclease T2 family
Ribonucleas_3_2 PF11469 Family 3 59 113.80 36 85.55 Changed Ribonuclease III
Ribonucleas_3_3 PF14622 Family 48 9277 129.80 35 45.77 Changed Ribonuclease-III-like
Ribonuc_2-5A PF06479 Family 167 1485 124.40 36 13.50 Changed Ribonuclease 2-5A
Ribonuc_L-PSP PF01042 Domain 29 24388 117.00 26 74.32 Changed Endoribonuclease L-PSP
Ribonuc_P_40 PF08584 Family 53 745 234.50 23 67.86 Changed Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N PF08471 Family 67 1669 97.60 50 8.98 Changed Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC PF02867 Family 76 14958 422.00 26 63.08 Changed Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN PF00317 Domain 134 8573 77.30 31 9.75 Changed Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm PF00268 Domain 320 8229 268.60 28 77.49 Changed Ribonucleotide reductase, small chain
Ribophorin_I PF04597 Family 184 1331 395.90 31 79.60 Changed Ribophorin I
Ribophorin_II PF05817 Family 41 1259 384.70 23 88.07 Changed Oligosaccharyltransferase subunit Ribophorin II
Ribosomal_60s PF00428 Family 70 5126 87.80 31 48.83 Changed 60s Acidic ribosomal protein
Ribosomal_L1 PF00687 Domain 662 11897 195.50 34 75.80 Changed Ribosomal protein L1p/L10e family
Ribosomal_L10 PF00466 Family 119 11251 99.10 26 47.04 Changed Ribosomal protein L10
Ribosomal_L11 PF00298 Domain 774 10856 69.70 43 44.61 Changed Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N PF03946 Domain 333 10769 65.20 49 41.58 Changed Ribosomal protein L11, N-terminal domain
Ribosomal_L12 PF00542 Domain 404 9798 66.40 54 47.30 Changed Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L12_N PF16320 Domain 578 8942 51.40 39 37.67 Changed Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L13 PF00572 Family 671 10973 120.60 42 74.30 Changed Ribosomal protein L13
Ribosomal_L13e PF01294 Family 113 1490 165.10 49 79.11 Changed Ribosomal protein L13e
Ribosomal_L14 PF00238 Domain 335 11153 120.60 52 93.21 Changed Ribosomal protein L14p/L23e
Ribosomal_L14e PF01929 Family 153 1402 73.30 37 45.65 Changed Ribosomal protein L14
Ribosomal_L15e PF00827 Family 99 1926 173.60 57 77.55 Changed Ribosomal L15
Ribosomal_L16 PF00252 Family 523 11159 131.00 43 80.80 Changed Ribosomal protein L16p/L10e
Ribosomal_L17 PF01196 Family 680 9305 100.20 46 64.48 Changed Ribosomal protein L17
Ribosomal_L18 PF17135 Family 75 1893 158.60 47 81.16 Changed Ribosomal protein 60S L18 and 50S L18e
Ribosomal_L18A PF01775 Domain 60 1845 106.10 47 64.35 Changed Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Ribosomal_L18p PF00861 Family 16 9002 114.70 44 90.36 Changed Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Ribosomal_L18_c PF14204 Domain 164 1673 89.40 42 30.44 Changed Ribosomal L18 C-terminal region
Ribosomal_L19 PF01245 Family 475 9111 110.40 46 78.50 Changed Ribosomal protein L19
Ribosomal_L19e PF01280 Family 138 2010 134.10 54 41.87 Changed Ribosomal protein L19e
Ribosomal_L2 PF00181 Domain 26 10679 77.10 49 27.47 Changed Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20 PF00453 Family 431 8535 105.90 51 86.02 Changed Ribosomal protein L20
Ribosomal_L21e PF01157 Family 170 2157 93.90 49 59.95 Changed Ribosomal protein L21e
Ribosomal_L21p PF00829 Family 762 9181 100.20 38 76.25 Changed Ribosomal prokaryotic L21 protein
Ribosomal_L22 PF00237 Domain 850 11354 109.40 36 70.40 Changed Ribosomal protein L22p/L17e
Ribosomal_L22e PF01776 Family 107 1588 104.30 51 76.79 Changed Ribosomal L22e protein family
Ribosomal_L23 PF00276 Family 724 11423 83.80 34 67.96 Changed Ribosomal protein L23
Ribosomal_L23eN PF03939 Family 137 1567 51.30 53 27.99 Changed Ribosomal protein L23, N-terminal domain
ribosomal_L24 PF17136 Family 542 8693 64.50 40 56.10 Changed Ribosomal proteins 50S L24/mitochondrial 39S L24
Ribosomal_L24e PF01246 Domain 117 3009 62.30 45 35.73 Changed Ribosomal protein L24e
Ribosomal_L25p PF01386 Domain 740 7203 87.40 31 42.84 Changed Ribosomal L25p family
Ribosomal_L26 PF16906 Family 111 1826 110.70 52 73.42 Changed Ribosomal proteins L26 eukaryotic, L24P archaeal
Ribosomal_L27 PF01016 Family 429 9146 79.90 54 74.87 Changed Ribosomal L27 protein
Ribosomal_L27A PF00828 Family 558 11212 119.40 34 70.18 Changed Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Ribosomal_L27e PF01777 Family 95 1412 82.60 49 51.84 Changed Ribosomal L27e protein family
Ribosomal_L27_C PF18471 Domain 17 70 231.80 30 60.87 New Ribosomal L27 protein C-terminal domain
Ribosomal_L28 PF00830 Family 498 8864 59.40 36 64.63 Changed Ribosomal L28 family
Ribosomal_L28e PF01778 Family 239 2368 112.50 31 48.36 Changed Ribosomal L28e protein family
Ribosomal_L29 PF00831 Family 858 9782 56.80 37 69.51 Changed Ribosomal L29 protein
Ribosomal_L29e PF01779 Family 72 1130 39.10 66 40.04 Changed Ribosomal L29e protein family
Ribosomal_L2_C PF03947 Domain 455 11038 126.40 51 45.55 Changed Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3 PF00297 Family 7 11561 161.10 33 63.28 Changed Ribosomal protein L3
Ribosomal_L30 PF00327 Domain 873 9640 50.90 33 45.53 Changed Ribosomal protein L30p/L7e
Ribosomal_L30_N PF08079 Domain 161 1778 70.10 40 27.55 Changed Ribosomal L30 N-terminal domain
Ribosomal_L31 PF01197 Family 601 9125 70.30 45 86.72 Changed Ribosomal protein L31
Ribosomal_L31e PF01198 Family 112 2019 78.20 50 59.95 Changed Ribosomal protein L31e
Ribosomal_L32e PF01655 Family 176 1986 103.70 50 64.35 Changed Ribosomal protein L32
Ribosomal_L32p PF01783 Family 123 8338 55.20 34 75.93 Changed Ribosomal L32p protein family
Ribosomal_L33 PF00471 Family 432 8820 47.80 41 85.96 Changed Ribosomal protein L33
Ribosomal_L34 PF00468 Family 321 6941 43.80 58 77.55 Changed Ribosomal protein L34
Ribosomal_L34e PF01199 Family 100 1586 90.30 51 69.79 Changed Ribosomal protein L34e
Ribosomal_L35Ae PF01247 Domain 108 1517 92.90 51 65.36 Changed Ribosomal protein L35Ae
Ribosomal_L35p PF01632 Family 664 8296 60.60 40 82.75 Changed Ribosomal protein L35
Ribosomal_L36 PF00444 Domain 209 6551 38.30 57 79.62 Changed Ribosomal protein L36
Ribosomal_L36e PF01158 Family 91 1460 92.50 52 70.52 Changed Ribosomal protein L36e
Ribosomal_L37 PF08561 Family 83 1014 88.20 28 51.36 Changed Mitochondrial ribosomal protein L37
Ribosomal_L37ae PF01780 Family 114 1805 80.70 54 76.79 Changed Ribosomal L37ae protein family
Ribosomal_L37e PF01907 Family 90 1598 51.80 60 49.84 Changed Ribosomal protein L37e
Ribosomal_L38e PF01781 Family 97 1309 68.30 56 69.92 Changed Ribosomal L38e protein family
Ribosomal_L39 PF00832 Family 85 1282 41.10 59 56.06 Changed Ribosomal L39 protein
Ribosomal_L4 PF00573 Family 123 11195 194.90 32 79.49 Changed Ribosomal protein L4/L1 family
Ribosomal_L40e PF01020 Family 29 1415 46.10 62 29.38 Changed Ribosomal L40e family
Ribosomal_L41 PF05162 Family 6 217 24.70 83 27.19 Changed Ribosomal protein L41
Ribosomal_L44 PF00935 Family 86 1795 74.60 60 56.18 Changed Ribosomal protein L44
Ribosomal_L5 PF00281 Domain 601 10190 56.40 47 29.87 Changed Ribosomal protein L5
Ribosomal_L50 PF10501 Domain 46 629 107.00 19 33.25 Changed Ribosomal subunit 39S
Ribosomal_L5e PF17144 Family 101 2252 128.90 49 53.30 Changed Ribosomal large subunit proteins 60S L5, and 50S L18
Ribosomal_L5_C PF00673 Domain 472 10589 94.90 48 49.12 Changed ribosomal L5P family C-terminus
Ribosomal_L6 PF00347 Domain 94 21087 74.80 25 78.72 Changed Ribosomal protein L6
Ribosomal_L6e PF01159 Family 165 1742 103.20 44 41.37 Changed Ribosomal protein L6e
Ribosomal_L6e_N PF03868 Domain 52 780 54.40 43 20.86 Changed Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae PF01248 Domain 52 10939 92.40 23 49.32 Changed Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C PF03948 Domain 1017 7889 84.80 32 52.71 Changed Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N PF01281 Domain 653 8539 46.70 45 27.39 Changed Ribosomal protein L9, N-terminal domain
Ribosomal_S10 PF00338 Family 416 11289 94.30 46 73.92 Changed Ribosomal protein S10p/S20e
Ribosomal_S11 PF00411 Family 7 10989 110.00 51 76.11 Changed Ribosomal protein S11
Ribosomal_S12 PF17487 Family 5 0 0.00 0 0.00 Changed Ribosomal protein S12
Ribosomal_S13 PF00416 Family 11 10993 103.50 46 82.11 Changed Ribosomal protein S13/S18
Ribosomal_S13_N PF08069 Domain 122 1746 58.00 56 35.68 Changed Ribosomal S13/S15 N-terminal domain
Ribosomal_S14 PF00253 Family 407 10557 52.70 44 57.08 Changed Ribosomal protein S14p/S29e
Ribosomal_S15 PF00312 Domain 745 10745 80.30 42 65.03 Changed Ribosomal protein S15
Ribosomal_S16 PF00886 Family 718 9030 60.20 45 50.40 Changed Ribosomal protein S16
Ribosomal_S17 PF00366 Domain 651 10926 67.80 44 62.96 Changed Ribosomal protein S17
Ribosomal_S17e PF00833 Family 50 1793 107.40 52 75.50 Changed Ribosomal S17
Ribosomal_S17_N PF16205 Family 76 1435 64.60 62 38.51 Changed Ribosomal_S17 N-terminal
Ribosomal_S18 PF01084 Family 423 9812 51.70 47 49.07 Changed Ribosomal protein S18
Ribosomal_S19 PF00203 Domain 362 10570 80.60 52 76.52 Changed Ribosomal protein S19
Ribosomal_S19e PF01090 Family 170 1824 130.90 45 79.73 Changed Ribosomal protein S19e
Ribosomal_S2 PF00318 Family 469 13173 168.00 35 73.05 Changed Ribosomal protein S2
Ribosomal_S20p PF01649 Family 764 7973 82.00 38 90.84 Changed Ribosomal protein S20
Ribosomal_S21 PF01165 Family 371 7835 54.70 37 66.76 Changed Ribosomal protein S21
Ribosomal_S21e PF01249 Family 73 1263 76.40 56 60.99 Changed Ribosomal protein S21e
Ribosomal_S22 PF08136 Family 2 44 41.80 60 79.84 Changed 30S ribosomal protein subunit S22 family
Ribosomal_S24e PF01282 Family 174 2010 78.30 46 55.93 Changed Ribosomal protein S24e
Ribosomal_S25 PF03297 Family 79 1525 95.50 49 67.27 Changed S25 ribosomal protein
Ribosomal_S26e PF01283 Family 36 1590 101.80 58 74.77 Changed Ribosomal protein S26e
Ribosomal_S27 PF01599 Domain 73 1605 44.80 59 24.81 Changed Ribosomal protein S27a
Ribosomal_S27e PF01667 Family 7 1841 54.10 60 53.17 Changed Ribosomal protein S27
Ribosomal_S28e PF01200 Family 47 1524 61.20 60 67.83 Changed Ribosomal protein S28e
Ribosomal_S30 PF04758 Family 38 1215 56.80 61 55.11 Changed Ribosomal protein S30
Ribosomal_S30AE PF02482 Family 938 9205 94.50 25 60.12 Changed Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae PF01015 Family 146 2132 185.70 49 76.93 Changed Ribosomal S3Ae family
Ribosomal_S3_C PF00189 Domain 295 9982 82.90 52 33.85 Changed Ribosomal protein S3, C-terminal domain
Ribosomal_S4 PF00163 Family 502 10498 94.10 32 46.53 Changed Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e PF00900 Family 186 2069 73.60 52 28.07 Changed Ribosomal family S4e
Ribosomal_S4Pg PF11993 Family 17 162 162.30 28 95.90 Changed Ribosomal S4P (gammaproteobacterial)
Ribosomal_S5 PF00333 Domain 441 11329 64.50 48 29.10 Changed Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 Domain 556 11406 71.00 39 31.59 Changed Ribosomal protein S5, C-terminal domain
Ribosomal_S6 PF01250 Domain 887 9186 89.90 30 70.73 Changed Ribosomal protein S6
Ribosomal_S6e PF01092 Family 124 2080 116.00 52 49.98 Changed Ribosomal protein S6e
Ribosomal_S7 PF00177 Domain 490 10910 147.70 41 83.09 Changed Ribosomal protein S7p/S5e
Ribosomal_S7e PF01251 Family 72 1582 171.30 52 72.75 Changed Ribosomal protein S7e
Ribosomal_S8 PF00410 Domain 497 10774 126.90 39 94.31 Changed Ribosomal protein S8
Ribosomal_S8e PF01201 Family 272 3072 194.00 35 85.36 Changed Ribosomal protein S8e
Ribosomal_S9 PF00380 Family 740 10994 122.00 44 74.16 Changed Ribosomal protein S9/S16
Ribosomal_TL5_C PF14693 Domain 727 6790 85.10 28 40.20 Changed Ribosomal protein TL5, C-terminal domain
Ribosom_S12_S23 PF00164 Family 12 10822 111.00 58 80.44 Changed Ribosomal protein S12/S23
Ribosom_S30AE_C PF16321 Domain 389 4647 56.40 38 28.64 Changed Sigma 54 modulation/S30EA ribosomal protein C terminus
Ribos_L4_asso_C PF14374 Domain 102 1367 74.90 43 19.55 Changed 60S ribosomal protein L4 C-terminal domain
Ribo_biogen_C PF04034 Domain 197 1408 124.00 46 41.50 Changed Ribosome biogenesis protein, C-terminal
Ribul_P_3_epim PF00834 Domain 12 10408 193.10 42 86.39 Changed Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A PF06026 Family 562 5486 170.20 39 70.61 Changed Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse PF02267 Domain 36 318 196.50 35 77.92 Changed ADP-ribosyl cyclase
Rib_recp_KP_reg PF05104 Family 15 237 132.30 45 11.74 Changed Ribosome receptor lysine/proline rich region
RIC1 PF07064 Family 78 1168 245.20 33 21.80 Changed RIC1
RIC3 PF15361 Family 32 523 186.30 24 40.13 Changed Resistance to inhibitors of cholinesterase homologue 3
Ric8 PF10165 Family 112 1215 384.10 27 82.14 Changed Guanine nucleotide exchange factor synembryn
RICH PF05062 Domain 25 1 78.00 100 11.13 Changed RICH domain
RicinB_lectin_2 PF14200 Domain 272 8709 81.70 22 25.57 Changed Ricin-type beta-trefoil lectin domain-like
Ricin_B_lectin PF00652 Domain 85 10823 121.00 21 21.89 Changed Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti PF05433 Family 87 4380 42.00 40 24.94 Changed Glycine zipper 2TM domain
RICTOR_M PF14666 Domain 104 931 103.10 36 7.32 Changed Rapamycin-insensitive companion of mTOR, middle domain
RICTOR_N PF14664 Domain 103 1066 341.50 27 26.05 Changed Rapamycin-insensitive companion of mTOR, N-term
RICTOR_phospho PF14665 Domain 9 167 105.00 64 6.53 Changed Rapamycin-insensitive companion of mTOR, phosphorylation-site
RICTOR_V PF14668 Domain 106 985 70.80 43 5.06 Changed Rapamycin-insensitive companion of mTOR, domain 5
Rieske PF00355 Domain 55 33574 95.20 20 29.86 Changed Rieske [2Fe-2S] domain
Rieske_2 PF13806 Domain 47 3191 104.20 32 43.30 Changed Rieske-like [2Fe-2S] domain
Rieske_3 PF18465 Domain 20 141 93.90 48 11.46 New Rieske 3Fe-4S
Rif1_N PF12231 Family 70 734 323.70 21 20.28 Changed Rap1-interacting factor 1 N terminal
RIF5_SNase_1 PF18187 Domain 5 6 155.70 41 11.90 New TbRIF5 SNase domain 1
RIF5_SNase_2 PF18189 Domain 5 6 162.20 34 12.39 New TbRIF5 SNase domain 2
RIFIN PF02009 Family 254 2070 262.80 37 82.86 Changed Rifin
RIG-I_C PF18119 Domain 21 414 139.90 30 16.85 New RIG-I receptor C-terminal domain
RIG-I_C-RD PF11648 Domain 74 516 114.20 26 13.85 Changed C-terminal domain of RIG-I
RIH_assoc PF08454 Family 71 1898 111.60 46 3.35 Changed RyR and IP3R Homology associated
RIIa PF02197 Domain 12 1561 37.20 31 9.36 Changed Regulatory subunit of type II PKA R-subunit
RII_binding_1 PF10522 Motif 7 267 19.00 39 2.00 Changed RII binding domain
RILP PF11461 Family 37 525 55.70 41 16.20 Changed Rab interacting lysosomal protein
RimK PF08443 Domain 4 7155 164.40 23 35.81 Changed RimK-like ATP-grasp domain
Rimk_N PF18030 Domain 263 2009 94.00 45 28.16 New RimK PreATP-grasp domain
RimM PF01782 Domain 127 6863 83.50 25 44.17 Changed RimM N-terminal domain
RinB PF06116 Family 2 89 48.90 61 87.90 Changed Transcriptional activator RinB
RINGv PF12906 Domain 21 7534 49.60 38 10.16 Changed RING-variant domain
Ring_hydroxyl_A PF00848 Domain 48 8542 206.40 16 53.47 Changed Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B PF00866 Domain 24 2107 140.40 26 82.50 Changed Ring hydroxylating beta subunit
RINT1_TIP1 PF04437 Family 62 1244 444.60 21 62.05 Changed RINT-1 / TIP-1 family
RIO1 PF01163 Family 27 5190 167.10 27 42.63 Changed RIO1 family
Rio2_N PF09202 Domain 27 1356 81.40 47 18.74 Changed Rio2, N-terminal
RIP PF00161 Domain 38 815 177.40 18 46.03 Changed Ribosome inactivating protein
Ripply PF14998 Family 32 247 73.00 54 60.88 Changed Transcription Regulator
RisS_PPD PF16524 Domain 36 350 107.20 43 23.39 Changed Periplasmic domain of Sensor histidine kinase RisS
Rit1_C PF17184 Domain 112 781 237.90 40 52.76 Changed Rit1 N-terminal domain
RITA PF17066 Family 10 68 223.90 48 93.42 Changed RBPJ-interacting and tubulin associated protein
RIX1 PF08167 Domain 91 849 187.50 21 23.82 Changed rRNA processing/ribosome biogenesis
RL PF17797 Domain 18 201 71.40 35 12.38 New RL domain
RL10P_insert PF17777 Domain 36 3000 71.60 38 23.68 New Insertion domain in 60S ribosomal protein L10P
RL11D PF11088 Family 2 3 96.70 54 91.48 Changed Glycoprotein encoding membrane proteins RL5A and RL6
RLAN PF14401 Family 78 631 149.80 33 30.82 Changed RimK-like ATPgrasp N-terminal domain
RlaP PF10127 Family 29 1953 213.80 21 80.81 Changed RNA repair pathway DNA polymerase beta family
RLI PF04068 Family 70 2628 33.10 37 7.29 Changed Possible Fer4-like domain in RNase L inhibitor, RLI
RLL PF10036 Family 47 478 214.90 34 86.00 Changed RNA transcription, translation and transport factor protein
RlmM_FDX PF18125 Domain 16 670 70.20 44 19.63 New RlmM ferredoxin-like domain
RloB PF13707 Domain 134 902 178.30 20 86.07 Changed RloB-like protein
RMF PF04957 Family 29 480 53.30 52 83.28 Changed Ribosome modulation factor
RMI1_C PF16099 Family 29 401 133.90 24 23.81 Changed Recq-mediated genome instability protein 1, C-terminal OB-fold
RMI1_N PF08585 Domain 106 1735 151.10 23 33.50 Changed RecQ mediated genome instability protein
RMI2 PF16100 Family 30 264 109.20 35 71.08 Changed RecQ-mediated genome instability protein 2
RmlD_sub_bind PF04321 Domain 25 9633 272.20 25 86.88 Changed RmlD substrate binding domain
RMMBL PF07521 Motif 98 13146 62.90 23 10.88 Changed Zn-dependent metallo-hydrolase RNA specificity domain
RMP PF14996 Family 24 207 135.50 43 60.71 Changed Retinal Maintenance
RmuC PF02646 Family 350 5254 289.10 25 68.22 Changed RmuC family
RNA12 PF10443 Family 17 729 326.20 30 50.58 Changed RNA12 protein
RnaseA PF00074 Domain 166 724 114.90 28 71.62 Changed Pancreatic ribonuclease
RNaseH_C PF09293 Domain 2 67 117.40 33 40.67 Changed T4 RNase H, C terminal
RNaseH_like PF04308 Family 55 766 145.10 34 87.55 Changed Ribonuclease H-like
RNaseH_pPIWI_RE PF13032 Domain 58 206 269.50 19 30.92 Changed RNaseH domain of pPIWI_RE
RNase_3_N PF18497 Domain 16 59 104.60 29 19.59 New Ribonuclease III N-terminal domain
RNAse_A_bac PF18431 Domain 39 292 112.80 25 27.93 New Bacterial CdiA-CT RNAse A domain
RNase_E_G PF10150 Family 604 8231 255.70 37 37.14 Changed Ribonuclease E/G family
RNase_H PF00075 Domain 23 11296 136.60 27 40.49 Changed RNase H
RNase_H2-Ydr279 PF09468 Domain 91 950 166.80 19 46.95 Changed Ydr279p protein family (RNase H2 complex component) wHTH domain
RNase_H2_suC PF08615 Family 19 918 134.80 24 67.23 Changed Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
RNase_HII PF01351 Family 11 10076 182.30 33 76.48 Changed Ribonuclease HII
RNase_H_2 PF13482 Domain 81 2819 167.80 19 32.61 Changed RNase_H superfamily
RNase_II_C_S1 PF18614 Domain 119 811 61.30 33 12.84 New RNase II-type exonuclease C-terminal S1 domain
RNase_J_C PF17770 Domain 101 4980 71.70 32 12.71 New Ribonuclease J C-terminal domain
RNase_PH PF01138 Domain 159 27955 132.80 27 40.23 Changed 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 Domain 86 20036 68.20 24 18.71 Changed 3' exoribonuclease family, domain 2
RNase_P_p30 PF01876 Domain 40 1455 207.60 24 63.11 Changed RNase P subunit p30
RNase_P_pop3 PF08228 Family 5 308 148.10 23 54.08 Changed RNase P subunit Pop3
RNase_P_Rpp14 PF01900 Family 214 1581 108.20 24 58.32 Changed Rpp14/Pop5 family
RNase_T PF00929 Family 41 30542 160.30 20 37.40 Changed Exonuclease
RNase_Zc3h12a PF11977 Domain 21 1580 144.80 39 24.21 Changed Zc3h12a-like Ribonuclease NYN domain
RNase_Zc3h12a_2 PF14626 Family 3 39 110.70 28 22.90 Changed Zc3h12a-like Ribonuclease NYN domain
RNA_bind PF08675 Domain 11 238 76.60 57 13.17 Changed RNA binding domain
RNA_binding PF01877 Family 97 591 113.90 24 77.55 Changed RNA binding
RNA_capsid PF03035 Family 34 4 125.50 24 81.10 Changed Calicivirus putative RNA polymerase/capsid protein
RNA_GG_bind PF10258 Domain 62 570 81.50 34 17.77 Changed PHAX RNA-binding domain
RNA_helicase PF00910 Domain 99 867 100.90 20 7.30 Changed RNA helicase
RNA_ligase PF09414 Family 175 1420 178.70 19 48.38 Changed RNA ligase
RNA_lig_T4_1 PF09511 Family 141 912 219.70 32 32.37 Changed RNA ligase
RNA_Me_trans PF04252 Family 95 650 190.20 43 81.93 Changed Predicted SAM-dependent RNA methyltransferase
RNA_pol PF00940 Family 209 1855 400.40 40 40.18 Changed DNA-dependent RNA polymerase
RNA_polI_A14 PF08203 Family 24 79 72.00 36 48.85 Changed Yeast RNA polymerase I subunit RPA14
RNA_polI_A34 PF08208 Family 79 633 206.90 18 53.79 Changed DNA-directed RNA polymerase I subunit RPA34.5
RNA_pol_3_Rpc31 PF11705 Family 95 1074 198.60 22 80.69 Changed DNA-directed RNA polymerase III subunit Rpc31
RNA_pol_A_bac PF01000 Domain 59 11104 120.80 29 36.64 Changed RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD PF03118 Domain 63 8478 65.90 43 19.93 Changed Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_inhib PF16857 Domain 12 55 46.10 54 76.59 Changed RNA polymerase inhibitor
RNA_pol_I_A49 PF06870 Family 109 1140 336.00 19 81.66 Changed A49-like RNA polymerase I associated factor
RNA_pol_I_TF PF04090 Family 10 371 174.10 20 41.20 Changed RNA polymerase I specific initiation factor
RNA_pol_L PF01193 Domain 458 11161 208.00 30 63.74 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2 PF13656 Domain 264 2626 73.60 35 50.33 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD PF02150 Domain 9 2215 36.00 34 22.51 Changed RNA polymerases M/15 Kd subunit
RNA_pol_N PF01194 Domain 113 1464 58.60 59 73.06 Changed RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25 PF08292 Domain 23 1136 117.00 34 53.11 Changed RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4 PF06883 Domain 134 1102 58.40 41 5.20 Changed RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1 PF04997 Domain 25 12333 337.70 36 25.24 Changed RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 Domain 19 18351 107.20 36 11.64 Changed RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 Domain 112 12328 162.10 25 11.79 Changed RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 Domain 106 11566 95.00 29 6.81 Changed RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 Domain 24 13565 452.60 28 35.83 Changed RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6 PF04992 Domain 140 1282 174.30 37 10.82 Changed RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7 PF04990 Domain 89 1246 131.10 45 7.96 Changed RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R PF05001 Repeat 95 12848 14.00 77 13.59 Changed RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1 PF04563 Family 13 12090 414.10 21 34.73 Changed RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 Domain 22 16870 140.40 22 16.52 Changed RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 Domain 134 12222 67.40 53 5.62 Changed RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 Domain 278 3058 61.90 42 5.57 Changed RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_45 PF10385 Domain 789 7775 67.40 42 5.38 Changed RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_5 PF04567 Domain 158 3071 50.40 43 4.54 Changed RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 Domain 71 13123 410.90 40 36.23 Changed RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 Domain 46 12176 82.80 49 6.98 Changed RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4 PF03874 Family 53 2488 113.10 22 68.50 Changed RNA polymerase Rpb4
RNA_pol_Rpb5_C PF01191 Domain 161 1923 70.60 52 34.59 Changed RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N PF03871 Domain 144 1468 90.40 34 38.09 Changed RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6 PF01192 Family 424 8322 56.70 29 56.54 Changed RNA polymerase Rpb6
RNA_pol_Rpb8 PF03870 Family 124 1246 130.60 39 86.82 Changed RNA polymerase Rpb8
RNA_pol_RpbG PF16992 Family 8 30 115.60 27 95.38 Changed DNA-directed RNA polymerase, subunit G
RNA_pol_Rpc34 PF05158 Family 14 1434 245.40 23 85.97 Changed RNA polymerase Rpc34 subunit
RNA_pol_Rpc4 PF05132 Family 178 1212 132.10 25 30.44 Changed RNA polymerase III RPC4
RNA_pol_Rpc82 PF05645 Family 29 990 234.80 15 41.84 Changed RNA polymerase III subunit RPC82
RNA_pol_Rpo13 PF12136 Domain 7 16 42.80 39 44.54 Changed RNA polymerase Rpo13 subunit HTH domain
RNA_replicase_B PF03431 Family 5 13 474.10 32 84.73 Changed RNA replicase, beta-chain
RNB PF00773 Domain 59 12306 302.60 31 39.19 Changed RNB domain
Rnf-Nqr PF02508 Family 719 6878 189.60 36 90.76 Changed Rnf-Nqr subunit, membrane protein
RNF111_N PF15303 Family 11 339 243.50 47 37.78 Changed E3 ubiquitin-protein ligase Arkadia N-terminus
RNF220 PF15926 Family 9 541 176.10 27 45.61 Changed E3 ubiquitin-protein ligase RNF220
RnfC_N PF13375 Domain 60 2446 96.10 33 18.85 Changed RnfC Barrel sandwich hybrid domain
RNHCP PF12647 Domain 77 580 86.40 42 68.93 Changed RNHCP domain
Rnk_N PF14760 Domain 98 975 40.50 37 27.52 Changed Rnk N-terminus
RnlA_toxin PF15935 Domain 9 70 188.10 21 57.22 Changed RNase LS, bacterial toxin
RnlB_antitoxin PF15933 Family 10 49 92.40 23 77.76 Changed Antitoxin to bacterial toxin RNase LS or RnlA
RNR_Alpha PF17975 Domain 46 459 90.10 32 12.60 New Ribonucleotide reductase alpha domain
RNR_inhib PF08591 Family 43 377 102.80 29 41.46 Changed Ribonucleotide reductase inhibitor
RNR_N PF08343 Family 141 1504 80.80 45 11.43 Changed Ribonucleotide reductase N-terminal
Robl_LC7 PF03259 Domain 38 6888 89.80 26 63.44 Changed Roadblock/LC7 domain
Roc PF08477 Domain 184 2787 108.30 20 11.75 Changed Ras of Complex, Roc, domain of DAPkinase
Rod-binding PF10135 Family 295 2554 49.60 28 23.15 Changed Rod binding protein
Rod_C PF10493 Family 18 349 435.70 28 26.42 Changed Rough deal protein C-terminal region
Rod_cone_degen PF15201 Family 3 25 52.70 75 91.39 Changed Progressive rod-cone degeneration
ROF PF07073 Family 38 333 76.40 35 89.01 Changed Modulator of Rho-dependent transcription termination (ROF)
Rogdi_lz PF10259 Family 88 767 255.90 24 78.90 Changed Rogdi leucine zipper containing protein
ROK PF00480 Family 11 27278 272.50 22 79.67 Changed ROK family
ROKNT PF08067 Domain 8 301 41.30 82 10.52 Changed ROKNT (NUC014) domain
RolB_RolC PF02027 Family 13 37 186.00 17 67.35 Changed RolB/RolC glucosidase family
Rol_Rep_N PF18106 Domain 26 330 90.40 35 23.90 New Rolling Circle replication initiation protein N-terminal domain
Romo1 PF10247 Family 61 944 63.60 45 51.91 Changed Reactive mitochondrial oxygen species modulator 1
rOmpB PF12334 Family 2 3 220.00 63 13.32 Changed Rickettsia outer membrane protein B
Rootletin PF15035 Family 49 599 170.70 32 10.79 Changed Ciliary rootlet component, centrosome cohesion
Root_cap PF06830 Family 41 651 56.80 51 15.89 Changed Root cap
Rop PF01815 Domain 5 40 53.90 69 82.34 Changed Rop protein
Rop-like PF05082 Family 59 350 63.50 41 89.98 Changed Rop-like
ROQ_II PF18386 Domain 8 467 55.80 85 5.47 New Roquin II domain
Rossmann-like PF10727 Domain 5 1784 120.30 34 40.98 Changed Rossmann-like domain
ROS_MUCR PF05443 Family 221 2038 121.50 43 77.41 Changed ROS/MUCR transcriptional regulator protein
Rot1 PF10681 Family 65 458 198.20 41 84.23 Changed Chaperone for protein-folding within the ER, fungal
Rotamase PF00639 Domain 41 8250 96.40 24 30.68 Changed PPIC-type PPIASE domain
Rotamase_2 PF13145 Domain 111 4026 122.70 16 27.96 Changed PPIC-type PPIASE domain
Rotamase_3 PF13616 Domain 20 8969 110.00 30 29.01 Changed PPIC-type PPIASE domain
Rotavirus_VP1 PF12289 Domain 2 12 296.20 66 29.42 Changed Rotavirus VP1 C-terminal domain
Rotavirus_VP3 PF06929 Family 2 16 572.80 63 88.50 Changed Rotavirus VP3 protein
Rotavirus_VP7 PF05868 Family 3 7 250.10 35 99.43 Changed Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6 PF00980 Family 2 16 361.00 72 99.74 Changed Rotavirus major capsid protein VP6
Rota_NS26 PF01525 Family 6 19 171.60 49 85.30 Changed Rotavirus NS26
Rota_NS35 PF02509 Family 2 16 302.30 66 99.71 Changed Rotavirus non-structural protein 35
Rota_NS53 PF00981 Family 14 13 434.30 52 97.50 Changed Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6 PF04866 Family 1 6 92.30 71 99.64 Changed Rotavirus non-structural protein 6
Rota_NSP3 PF01665 Family 2 16 263.40 59 84.57 Changed Rotavirus non-structural protein NSP3
Rota_NSP4 PF01452 Family 1 13 172.50 76 96.27 Changed Rotavirus non structural protein
Rota_VP2 PF05087 Family 2 16 695.60 69 99.75 Changed Rotavirus VP2 protein
Rota_VP4_MID PF17477 Domain 2 17 180.60 57 27.52 Changed Rotavirus VP4 membrane interaction domain
Roughex PF06020 Family 2 15 276.50 39 91.16 Changed Drosophila roughex protein
Rox3 PF08633 Family 62 389 196.80 33 56.21 Changed Rox3 mediator complex subunit
RP-C PF03428 Domain 51 955 168.50 34 42.24 Changed Replication protein C N-terminal domain
RP-C_C PF11800 Family 48 871 210.70 28 53.10 Changed Replication protein C C-terminal region
RP1-2 PF12042 Domain 17 37 164.00 36 39.52 Changed Tubuliform egg casing silk strands structural domain
RP853 PF17542 Family 2 7 272.10 40 95.63 Changed Uncharacterized RP853
RP854 PF17460 Family 2 6 210.20 56 99.84 Changed Uncharacterized protein RP854
RPA PF10134 Family 22 1330 223.90 36 65.89 Changed Replication initiator protein A
RPA43_OB PF17875 Domain 191 630 108.00 30 29.36 New RPA43 OB domain in RNA Pol I
RPAP1_C PF08620 Family 114 995 70.50 43 7.19 Changed RPAP1-like, C-terminal
RPAP1_N PF08621 Family 130 951 45.40 35 4.93 Changed RPAP1-like, N-terminal
RPAP2_Rtr1 PF04181 Family 135 998 76.00 30 16.61 Changed Rtr1/RPAP2 family
RPAP3_C PF13877 Domain 152 1039 92.00 24 17.95 Changed Potential Monad-binding region of RPAP3
RPA_C PF08784 Domain 15 1156 101.70 20 35.94 Changed Replication protein A C terminal
RPA_interact_C PF14768 Family 80 428 80.90 30 34.68 Changed Replication protein A interacting C-terminal
RPA_interact_M PF14767 Family 25 288 76.10 34 34.83 Changed Replication protein A interacting middle
RPA_interact_N PF14766 Family 39 338 39.10 40 16.82 Changed Replication protein A interacting N-terminal
RPE65 PF03055 Family 557 5779 429.50 22 88.19 Changed Retinal pigment epithelial membrane protein
RPEL PF02755 Disordered 142 5019 23.70 43 9.27 Changed RPEL repeat
RPGR1_C PF18111 Domain 11 352 157.40 37 15.45 New Retinitis pigmentosa G-protein regulator interacting C-terminal
RPM2 PF08579 Family 5 75 118.90 31 10.47 Changed Mitochondrial ribonuclease P subunit (RPM2)
RPN13_C PF16550 Domain 56 978 116.50 28 31.98 Changed UCH-binding domain
RPN1_C PF18051 Domain 53 1336 53.20 68 6.14 New 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
RPN1_RPN2_N PF17781 Domain 26 1625 275.40 38 33.29 New RPN1/RPN2 N-terminal domain
RPN2_C PF18004 Domain 97 1346 154.30 35 16.83 New 26S proteasome regulatory subunit RPN2 C-terminal domain
Rpn3_C PF08375 Family 69 1173 65.20 51 12.51 Changed Proteasome regulatory subunit C-terminal
RPN5_C PF18098 Domain 49 1143 32.20 48 6.87 New 26S proteasome regulatory subunit RPN5 C-terminal domain
RPN6_C_helix PF18503 Domain 86 983 26.70 49 6.27 New 26S proteasome subunit RPN6 C-terminal helix domain
RPN6_N PF18055 Domain 132 1257 113.00 37 26.73 New 26S proteasome regulatory subunit RPN6 N-terminal domain
RPN7 PF10602 Family 57 2436 170.60 29 39.23 Changed 26S proteasome subunit RPN7
Rpn9_C PF18261 Domain 9 133 28.60 59 7.46 New Rpn9 C-terminal helix
rpo132 PF12415 Family 8 30 31.70 54 2.73 Changed Poxvirus DNA dependent RNA polymerase
rpo30_N PF12410 Family 9 33 132.40 57 57.81 Changed Poxvirus DNA dependent RNA polymerase 30kDa subunit
RPOL_N PF14700 Domain 184 1613 289.70 22 27.34 Changed DNA-directed RNA polymerase N-terminal
Rpp20 PF12328 Family 39 516 133.30 27 69.12 Changed Rpp20 subunit of nuclear RNase MRP and P
Rpr2 PF04032 Family 286 1505 100.90 23 48.15 Changed RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPS31 PF17067 Family 1 243 80.40 41 71.88 Changed Ribosomal protein S31e
RPT PF13446 Domain 169 1344 58.30 23 12.32 Changed A repeated domain in UCH-protein
RPW8 PF05659 Family 15 389 130.70 24 20.97 Changed Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC PF09382 Domain 119 6986 113.90 25 14.97 Changed RQC domain
RraA-like PF03737 Family 410 8242 155.90 28 68.40 Changed Aldolase/RraA
RraB PF06877 Domain 97 1096 100.40 24 67.28 Changed Regulator of ribonuclease activity B
RRF PF01765 Domain 959 9288 161.90 39 82.22 Changed Ribosome recycling factor
Rrf2 PF02082 Family 111 15111 81.70 29 53.62 Changed Transcriptional regulator
RRF_GI PF12614 Family 13 78 120.90 36 96.53 Changed Ribosome recycling factor
RRG8 PF17068 Family 5 40 238.60 23 88.54 Changed Required for respiratory growth protein 8 mitochondrial
RRM PF10378 Domain 14 341 60.10 43 7.17 Changed Putative RRM domain
RRM_1 PF00076 Domain 72 192165 67.40 22 22.58 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2 PF04059 Family 4 1844 92.50 49 14.44 Changed RNA recognition motif 2
RRM_3 PF08777 Domain 11 883 102.40 25 21.65 Changed RNA binding motif
RRM_4 PF10598 Domain 41 1217 90.70 74 3.99 Changed RNA recognition motif of the spliceosomal PrP8
RRM_5 PF13893 Domain 7 2982 114.00 24 27.10 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_7 PF16367 Domain 14 1353 90.50 55 16.04 Changed RNA recognition motif
RRM_8 PF11835 Domain 10 2007 87.20 44 17.20 Changed RRM-like domain
RRM_9 PF18444 Domain 36 104 70.90 34 11.60 New RNA recognition motif
RRM_DME PF15628 Family 13 489 95.60 66 6.63 Changed RRM in Demeter
RRM_occluded PF16842 Domain 49 368 78.80 42 7.31 Changed Occluded RNA-recognition motif
RRM_Rrp7 PF17799 Domain 9 626 156.00 24 48.51 New Rrp7 RRM-like N-terminal domain
RRN3 PF05327 Family 105 1351 456.60 23 79.10 Changed RNA polymerase I specific transcription initiation factor RRN3
Rrn6 PF10214 Family 51 487 650.10 15 77.48 Changed RNA polymerase I-specific transcription-initiation factor
RRN9 PF10680 Domain 49 299 72.30 33 11.96 Changed RNA polymerase I specific transcription initiation factor
RrnaAD PF00398 Domain 11 11748 245.10 28 82.06 Changed Ribosomal RNA adenine dimethylase
rRNA_methylase PF06962 Family 205 1300 136.70 37 68.38 Changed Putative rRNA methylase
rRNA_proc-arch PF13234 Domain 286 3010 233.00 21 22.60 Changed rRNA-processing arch domain
rRNA_processing PF08524 Domain 29 613 140.70 20 68.53 Changed rRNA processing
RRP14 PF15459 Family 55 661 56.70 43 12.02 Changed 60S ribosome biogenesis protein Rrp14
Rrp15p PF07890 Family 155 1061 141.60 29 51.11 Changed Rrp15p
RRP36 PF06102 Family 184 1148 161.90 31 55.76 Changed rRNA biogenesis protein RRP36
Rrp40_N PF18311 Domain 28 447 50.40 35 19.29 New Exosome complex exonuclease Rrp40 N-terminal domain
Rrp44_CSD1 PF17216 Domain 1 1460 122.80 30 12.82 Changed Rrp44-like cold shock domain
Rrp44_S1 PF17215 Domain 64 1087 85.80 30 9.10 Changed S1 domain
RRP7 PF12923 Domain 43 1065 120.40 30 39.29 Changed Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
RRS1 PF04939 Family 158 1119 160.90 38 56.89 Changed Ribosome biogenesis regulatory protein (RRS1)
RRT14 PF17075 Family 12 68 190.80 31 93.64 Changed Regular of rDNA transcription protein 14
RRXRR PF14239 Family 56 819 156.70 38 43.14 Changed RRXRR protein
RR_TM4-6 PF06459 Family 58 878 245.20 32 5.84 Changed Ryanodine Receptor TM 4-6
RS4NT PF08071 Domain 53 1854 35.50 62 13.40 Changed RS4NT (NUC023) domain
Rsa3 PF14615 Family 65 345 46.10 36 24.07 Changed Ribosome-assembly protein 3
RsbRD_N PF14361 Domain 123 1057 101.70 21 31.03 Changed RsbT co-antagonist protein rsbRD N-terminal domain
Rsbr_N PF08678 Domain 14 190 128.20 29 46.20 Changed Rsbr N terminal
RsbU_N PF08673 Domain 26 415 75.70 31 18.87 Changed Phosphoserine phosphatase RsbU, N-terminal domain
RSB_motif PF16294 Motif 28 709 90.40 31 11.71 Changed RNSP1-SAP18 binding (RSB) motif
Rsc14 PF08586 Family 14 32 99.40 50 51.37 Changed RSC complex, Rsc14/Ldb7 subunit
RSD-2 PF07547 Domain 17 39 81.30 29 14.49 Changed RSD-2 N-terminal domain
RsdA_SigD_bd PF16751 Domain 20 247 46.00 40 13.75 Changed Anti-sigma-D factor RsdA to sigma factor binding region
Rsd_AlgQ PF04353 Family 56 556 147.00 39 92.94 Changed Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C PF03873 Domain 47 468 55.30 35 26.82 Changed Anti sigma-E protein RseA, C-terminal domain
RseA_N PF03872 Domain 41 1207 93.70 26 45.48 Changed Anti sigma-E protein RseA, N-terminal domain
RseC_MucC PF04246 Family 196 1411 129.60 21 87.59 Changed Positive regulator of sigma(E), RseC/MucC
RSF PF14876 Family 2 14 278.70 49 66.80 Changed Respiratory growth transcriptional regulator
RsfS PF02410 Family 957 7991 99.60 33 60.07 Changed Ribosomal silencing factor during starvation
RsgA_GTPase PF03193 Domain 64 7472 172.30 34 52.60 Changed RsgA GTPase
RsgA_N PF16745 Domain 66 2402 56.30 37 18.74 Changed RsgA N-terminal domain
RsgI_N PF12791 Family 48 396 53.30 21 13.69 Changed Anti-sigma factor N-terminus
RskA PF10099 Family 231 3245 191.60 18 75.45 Changed Anti-sigma-K factor rskA
Rsm1 PF08600 Domain 10 675 91.60 24 19.71 Changed Rsm1-like
Rsm22 PF09243 Family 6 2157 227.40 20 53.33 Changed Mitochondrial small ribosomal subunit Rsm22
RsmF_methylt_CI PF17126 Domain 121 805 63.50 36 13.78 Changed RsmF rRNA methyltransferase first C-terminal domain
RsmJ PF04378 Domain 7 2093 240.90 36 84.65 Changed Ribosomal RNA large subunit methyltransferase D, RlmJ
RSN1_7TM PF02714 Family 77 5629 252.10 23 30.10 Changed Calcium-dependent channel, 7TM region, putative phosphate
RSN1_TM PF13967 Family 137 4872 154.10 22 17.52 Changed Late exocytosis, associated with Golgi transport
RSRP PF17069 Family 3 194 250.80 41 22.94 Changed Arginine/Serine-Rich protein 1
RSS_P20 PF11757 Domain 11 10 94.70 20 47.54 Changed Suppressor of RNA silencing P21-like N-terminal domain
RST PF12174 Domain 54 846 65.00 32 10.89 Changed RCD1-SRO-TAF4 (RST) plant domain
RSV_NS2 PF03113 Family 1 3 124.00 85 100.00 Changed Respiratory synctial virus non-structural protein NS2
RTA1 PF04479 Family 262 5859 208.30 26 66.20 Changed RTA1 like protein
RTBV_P12 PF06361 Family 1 1 110.00 100 100.00 Changed Rice tungro bacilliform virus P12 protein
RTBV_P46 PF06216 Family 1 1 389.00 100 100.00 Changed Rice tungro bacilliform virus P46 protein
RTC PF01137 Domain 172 2608 317.70 24 85.14 Changed RNA 3'-terminal phosphate cyclase
RTC4 PF14474 Domain 102 662 115.70 26 22.52 Changed RTC4-like domain
RtcB PF01139 Family 289 5388 321.80 29 87.41 Changed tRNA-splicing ligase RtcB
RtcR PF06956 Family 39 360 180.40 50 34.22 Changed Regulator of RNA terminal phosphate cyclase
RTC_insert PF05189 Domain 266 2064 104.40 27 27.86 Changed RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC PF09357 Family 57 797 189.60 30 75.88 Changed RteC protein
Rtf2 PF04641 Family 18 1504 238.30 23 74.36 Changed Rtf2 RING-finger
RTP PF02334 Domain 11 118 115.60 48 94.47 Changed Replication terminator protein
RTP1_C1 PF10363 Family 138 800 115.60 29 11.91 Changed Required for nuclear transport of RNA pol II C-terminus 1
RTP1_C2 PF10304 Family 67 504 32.90 33 3.41 Changed Required for nuclear transport of RNA pol II C-terminus 2
RTP801_C PF07809 Family 43 333 114.20 42 53.19 Changed RTP801 C-terminal region
Rtt102p PF09510 Family 10 48 129.30 31 56.65 Changed Rtt102p-like transcription regulator protein
Rtt106 PF08512 Domain 225 2934 90.40 28 12.11 Changed Histone chaperone Rttp106-like
Rtt106_N PF18215 Domain 3 25 46.40 42 10.29 New Histone chaperone Rtt106 N-terminal domain
RTT107_BRCT_5 PF16770 Domain 68 1473 97.60 25 10.03 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTT107_BRCT_6 PF16771 Domain 23 64 109.20 31 11.82 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTTN_N PF14726 Family 37 212 97.30 40 5.22 Changed Rotatin, an armadillo repeat protein, centriole functioning
RTX PF02382 Domain 10 19 305.90 43 26.80 Changed N-terminal domain in RTX protein
RtxA PF07634 Repeat 101 1170 17.30 37 13.90 Changed RtxA repeat
RTX_C PF08339 Family 4 13 150.50 30 16.34 Changed RTX C-terminal domain
RT_RNaseH PF17917 Domain 189 7021 95.90 27 12.66 New RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 Domain 325 9905 87.10 28 12.16 New RNase H-like domain found in reverse transcriptase
Rubella_Capsid PF05750 Family 1 1 300.00 100 28.22 Changed Rubella capsid protein
Rubella_E1 PF05748 Family 1 1 496.00 100 46.66 Changed Rubella membrane glycoprotein E1
Rubella_E2 PF05749 Family 1 1 267.00 100 25.12 Changed Rubella membrane glycoprotein E2
Rubis-subs-bind PF09273 Domain 143 2348 128.30 17 26.29 Changed Rubisco LSMT substrate-binding
RuBisCo_chap_C PF18087 Domain 98 235 143.00 35 36.74 New Rubisco Assembly chaperone C-terminal domain
RuBisCO_large PF00016 Domain 21 2433 258.40 35 63.70 Changed Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N PF02788 Domain 39 1937 116.80 34 26.48 Changed Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small PF00101 Domain 89 1740 96.80 33 57.06 Changed Ribulose bisphosphate carboxylase, small chain
Rubi_NSP_C PF12601 Family 1 1 66.00 100 3.12 Changed Rubivirus non-structural protein
Rubredoxin PF00301 Domain 26 4692 46.40 50 32.32 Changed Rubredoxin
Rubredoxin_2 PF18073 Domain 47 7997 28.00 46 6.23 New Rubredoxin metal binding domain
Rubredoxin_C PF18267 Domain 39 4823 69.60 32 9.63 New Rubredoxin NAD+ reductase C-terminal domain
Rubrerythrin PF02915 Domain 38 7432 116.00 24 58.16 Changed Rubrerythrin
RUN PF02759 Family 39 5015 140.60 19 18.50 Changed RUN domain
Runt PF00853 Domain 25 988 115.00 69 29.59 Changed Runt domain
RunxI PF08504 Family 9 447 92.20 70 23.25 Changed Runx inhibition domain
RusA PF05866 Family 89 1313 114.20 20 76.73 Changed Endodeoxyribonuclease RusA
RuvA_C PF07499 Domain 89 7321 47.10 31 23.47 Changed RuvA, C-terminal domain
RuvA_N PF01330 Domain 916 7590 61.50 35 30.64 Changed RuvA N terminal domain
RuvB_C PF05491 Domain 34 7657 71.80 53 20.97 Changed RuvB C-terminal winged helix domain
RuvB_N PF05496 Domain 91 9342 153.00 51 42.80 Changed Holliday junction DNA helicase RuvB P-loop domain
RuvC PF02075 Domain 5 6887 147.70 39 83.85 Changed Crossover junction endodeoxyribonuclease RuvC
RuvC_1 PF18516 Domain 15 39 398.90 31 33.09 New RuvC nuclease domain
RuvC_III PF18541 Domain 66 560 141.50 24 12.68 New RuvC endonuclease subdomain 3
RuvX PF03652 Family 131 7918 132.60 32 88.50 Changed Holliday junction resolvase
Rv2175c_C PF18367 Domain 42 1007 57.40 53 46.76 New Rv2175c C-terminal domain of unknown function
rve PF00665 Domain 86 43235 115.00 18 21.85 Changed Integrase core domain
rve_2 PF13333 Family 13 1796 52.50 31 51.22 Changed Integrase core domain
rve_3 PF13683 Domain 63 6136 63.10 30 35.74 Changed Integrase core domain
RVP PF00077 Domain 8 791 96.10 20 14.30 Changed Retroviral aspartyl protease
RVP_2 PF08284 Domain 8 3777 109.10 19 18.45 Changed Retroviral aspartyl protease
RVT_1 PF00078 Family 69 44710 167.60 15 26.52 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 Family 4 11121 149.10 22 22.62 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 Domain 27 11394 107.30 21 31.27 Changed Reverse transcriptase-like
RVT_connect PF06815 Domain 2 29 101.70 69 7.75 Changed Reverse transcriptase connection domain
RVT_N PF13655 Domain 112 1064 79.00 45 17.26 Changed N-terminal domain of reverse transcriptase
RVT_thumb PF06817 Domain 18 342 57.50 40 12.14 Changed Reverse transcriptase thumb domain
RWD PF05773 Domain 116 5784 117.00 19 17.64 Changed RWD domain
RWP-RK PF02042 Family 92 2055 48.40 44 8.99 Changed RWP-RK domain
RXLR PF16810 Family 18 913 130.00 16 79.98 Changed RXLR phytopathogen effector protein, Avirulence activity
RXLR_WY PF18634 Domain 6 68 47.30 38 16.88 New RXLR phytopathogen effector protein WY-domain
RXT2_N PF08595 Family 65 407 134.00 34 28.71 Changed RXT2-like, N-terminal
Rxt3 PF08642 Family 80 644 100.90 37 12.02 Changed Histone deacetylation protein Rxt3
Rx_N PF18052 Domain 505 14038 112.40 18 12.84 New Rx N-terminal domain
RYDR_ITPR PF01365 Family 72 3593 192.20 27 10.75 Changed RIH domain
RyR PF02026 Family 134 3750 87.90 35 7.83 Changed RyR domain
Rz1 PF06085 Family 6 53 41.30 50 58.67 Changed Lipoprotein Rz1 precursor
R_equi_Vir PF05526 Family 8 47 131.80 28 87.68 Changed Rhodococcus equi virulence-associated protein
New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z