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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
R-HINP1I PF11463 Family 4 49 182.20 53 80.27 Changed R.HinP1I restriction endonuclease
R3H PF01424 Domain 805 9158 60.90 31 16.01 Changed R3H domain
R3H-assoc PF13902 Domain 54 363 125.60 25 37.68 Changed R3H-associated N-terminal domain
RA PF00788 Domain 40 4688 90.40 18 11.04 Changed Ras association (RalGDS/AF-6) domain
Rab15_effector PF15208 Family 10 40 232.40 58 95.88 Changed Rab15 effector
Rab3-GTPase_cat PF13890 Family 52 350 150.00 43 18.39 Changed Rab3 GTPase-activating protein catalytic subunit
RAB3GAP2_C PF14656 Family 28 240 399.90 27 40.96 Changed Rab3 GTPase-activating protein regulatory subunit C-terminus
RAB3GAP2_N PF14655 Family 43 358 307.40 26 33.70 Changed Rab3 GTPase-activating protein regulatory subunit N-terminus
Rab5-bind PF09311 Family 5 346 211.40 32 44.10 Changed Rabaptin-like protein
Rab5ip PF07019 Family 183 809 82.30 28 55.66 Changed Rab5-interacting protein (Rab5ip)
Rabaptin PF03528 Family 3 251 253.80 41 45.05 Changed Rabaptin
RabGAP-TBC PF00566 Family 77 12758 197.30 19 30.08 Changed Rab-GTPase-TBC domain
RabGGT_insert PF07711 Domain 13 82 95.70 50 18.71 Changed Rab geranylgeranyl transferase alpha-subunit, insert domain
Rab_bind PF16704 Domain 4 137 63.00 63 4.73 New Rab binding domain
Rab_eff_C PF04698 Domain 8 250 326.40 37 55.00 Changed Rab effector MyRIP/melanophilin C-terminus
Rac1 PF09632 Domain 1 94 293.70 93 40.62 Changed Rac1-binding domain
RAC_head PF16717 Domain 81 413 94.10 34 18.89 New Ribosome-associated complex head domain
Rad1 PF02144 Family 24 646 241.80 26 77.49 Changed Repair protein Rad1/Rec1/Rad17
Rad10 PF03834 Family 129 641 110.80 43 36.29 Changed Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Rad17 PF03215 Family 3 751 332.60 20 56.34 Changed Rad17 cell cycle checkpoint protein
Rad21_Rec8 PF04824 Family 15 971 52.40 29 8.37 Changed Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 Family 123 1223 106.90 34 16.87 Changed N terminus of Rad21 / Rec8 like protein
Rad33 PF08730 Family 12 67 99.50 31 50.89 Changed Rad33
Rad4 PF03835 Domain 30 1032 138.80 22 17.97 Changed Rad4 transglutaminase-like domain
Rad50_zn_hook PF04423 Motif 57 459 51.10 23 5.09 Changed Rad50 zinc hook motif
Rad51 PF08423 Domain 19 4106 188.80 29 68.92 Changed Rad51
RAD51_interact PF15696 Family 23 110 38.50 54 7.40 New RAD51 interacting motif
Rad52_Rad22 PF04098 Family 34 1211 130.90 30 43.57 Changed Rad52/22 family double-strand break repair protein
Rad54_N PF08658 Family 87 278 184.70 37 22.17 Changed Rad54 N terminal
Rad60-SLD PF11976 Family 35 1921 69.70 32 33.73 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD_2 PF13881 Domain 22 685 106.80 29 59.98 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad9 PF04139 Family 12 702 234.60 23 57.35 Changed Rad9
Rad9_Rad53_bind PF08605 Family 8 139 136.60 29 10.65 Changed Fungal Rad9-like Rad53-binding
RadC PF04002 Family 1019 24446 109.70 42 57.47 Changed RadC-like JAB domain
Radial_spoke PF04712 Family 46 603 290.10 19 75.87 Changed Radial spokehead-like protein
Radial_spoke_3 PF06098 Family 52 314 256.00 35 60.70 Changed Radial spoke protein 3
Radical_SAM PF04055 Domain 518 270437 169.60 14 45.19 Changed Radical SAM superfamily
Radical_SAM_C PF16199 Family 636 13053 84.80 43 25.53 New Radical_SAM C-terminal domain
Radical_SAM_N PF08497 Family 322 6216 338.70 67 48.17 Changed Radical SAM N-terminal
Raffinose_syn PF05691 Family 4 1264 352.40 20 70.31 Changed Raffinose synthase or seed imbibition protein Sip1
Raftlin PF15250 Family 19 236 299.70 36 83.64 Changed Raftlin
RAG1 PF12940 Family 2 18572 356.30 59 83.04 Changed Recombination-activation protein 1 (RAG1)
RAG1_imp_bd PF12560 Family 18 7014 220.00 53 43.03 Changed RAG1 importin binding
RAG2 PF03089 Family 11 7725 261.20 58 92.07 Changed Recombination activating protein 2
RAG2_PHD PF13341 Domain 8 1260 53.70 79 13.37 Changed RAG2 PHD domain
RAI1 PF08652 Family 131 606 73.30 35 18.83 Changed RAI1 like PD-(D/E)XK nuclease
RAI16-like PF10257 Family 20 746 339.90 29 41.09 Changed Retinoic acid induced 16-like protein
Ral PF11058 Family 2 525 60.50 91 99.97 Changed Antirestriction protein Ral
RALF PF05498 Family 64 644 61.10 38 53.64 Changed Rapid ALkalinization Factor (RALF)
RAM PF15320 Family 32 123 82.50 39 54.56 Changed mRNA cap methylation, RNMT-activating mini protein
RAMP PF04901 Family 58 267 103.60 38 66.12 Changed Receptor activity modifying family
RAMP4 PF06624 Family 68 595 58.60 36 68.16 Changed Ribosome associated membrane protein RAMP4
RAMPs PF03787 Family 153 5395 237.40 27 74.67 Changed RAMP superfamily
Ran-binding PF05508 Family 82 239 303.70 42 55.11 Changed RanGTP-binding protein
RanGAP1_C PF07834 Domain 15 152 172.80 47 32.14 Changed RanGAP1 C-terminal domain
Ran_BP1 PF00638 Family 8 2640 114.70 30 23.24 Changed RanBP1 domain
RAP PF08373 Domain 73 1265 59.20 24 8.27 Changed RAP domain
RAP-1 PF03085 Family 6 155 189.20 36 59.24 Changed Rhoptry-associated protein 1 (RAP-1)
RAP1 PF07218 Family 2 155 576.70 65 98.62 Changed Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind PF09197 Domain 15 72 111.70 43 16.69 Changed Rap1, DNA-binding
Rap1_C PF11626 Family 78 283 86.20 28 14.51 Changed TRF2-interacting telomeric protein/Rap1 - C terminal domain
Rapamycin_bind PF08771 Domain 104 858 98.00 47 4.73 Changed Rapamycin binding domain
RapA_C PF12137 Domain 86 5101 355.10 61 37.81 Changed RNA polymerase recycling family C-terminal
Rapsyn_N PF10579 Family 3 137 78.10 43 17.60 Changed Rapsyn N-terminal myristoylation and linker region
Raptor_N PF14538 Domain 67 678 146.20 54 11.25 Changed Raptor N-terminal CASPase like domain
Rap_GAP PF02145 Family 263 1971 179.00 33 14.71 Changed Rap/ran-GAP
Ras PF00071 Domain 60 37595 152.10 28 62.06 Changed Ras family
RasGAP PF00616 Family 52 3716 136.40 22 13.76 Changed GTPase-activator protein for Ras-like GTPase
RasGAP_C PF03836 Family 130 858 130.70 33 10.19 Changed RasGAP C-terminus
RasGEF PF00617 Family 745 5548 182.70 24 19.11 Changed RasGEF domain
RasGEF_N PF00618 Domain 55 3657 106.90 21 10.11 Changed RasGEF N-terminal motif
RasGEF_N_2 PF14663 Domain 85 489 107.60 37 7.80 Changed Rapamycin-insensitive companion of mTOR RasGEF_N domain
Ras_bdg_2 PF14847 Domain 50 313 105.10 38 11.61 Changed Ras-binding domain of Byr2
Rav1p_C PF12234 Family 68 994 426.80 21 27.86 Changed RAVE protein 1 C terminal
RAWUL PF16207 Domain 65 927 85.00 28 20.80 New RAWUL domain RING finger- and WD40-associated ubiquitin-like
Rax2 PF12768 Family 76 303 260.90 29 22.67 Changed Cortical protein marker for cell polarity
RBB1NT PF08169 Domain 38 248 93.90 47 7.86 Changed RBB1NT (NUC162) domain
RbcS PF12338 Family 10 451 38.90 56 23.16 Changed Ribulose-1,5-bisphosphate carboxylase small subunit
RBD PF02196 Domain 84 1035 68.40 28 9.30 Changed Raf-like Ras-binding domain
RBD-FIP PF09457 Motif 19 639 44.20 40 6.91 Changed FIP domain
RBDV_coat PF06593 Family 1 24 272.50 95 100.00 Changed Raspberry bushy dwarf virus coat protein
RBFA PF02033 Family 921 19149 105.30 40 78.96 Changed Ribosome-binding factor A
RBM1CTR PF08081 Family 13 169 45.00 68 12.14 Changed RBM1CTR (NUC064) family
RBM39linker PF15519 Domain 101 699 86.10 33 16.39 Changed linker between RRM2 and RRM3 domains in RBM39 protein
RbpA PF13397 Family 58 2684 102.40 71 91.36 Changed RNA polymerase-binding protein
RBP_receptor PF14752 Family 34 293 373.70 25 70.87 Changed Retinol binding protein receptor
RbsD_FucU PF05025 Family 313 14526 134.40 42 98.20 Changed RbsD / FucU transport protein family
Rbsn PF11464 Domain 109 501 41.90 38 8.11 Changed Rabenosyn Rab binding domain
RB_A PF01858 Domain 79 584 189.50 36 20.97 Changed Retinoblastoma-associated protein A domain
RB_B PF01857 Domain 96 576 138.60 38 15.27 Changed Retinoblastoma-associated protein B domain
Rb_C PF08934 Domain 7 227 120.10 43 13.66 Changed Rb C-terminal domain
RC-P840_PscD PF10657 Family 6 13 142.40 66 98.98 Changed Photosystem P840 reaction centre protein PscD
RcbX PF02341 Family 31 1233 108.90 63 78.28 Changed RbcX protein
RCC1 PF00415 Repeat 102 30103 51.80 29 20.70 Changed Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 Repeat 192 6539 29.80 34 5.89 Changed Regulator of chromosome condensation (RCC1) repeat
RCC_reductase PF06405 Family 16 132 206.20 44 83.19 Changed Red chlorophyll catabolite reductase (RCC reductase)
Rcd1 PF04078 Family 71 898 231.00 58 71.91 Changed Cell differentiation family, Rcd1-like
RcnB PF11776 Family 96 6948 49.70 43 40.00 Changed Nickel/cobalt transporter regulator
RcpB PF16971 Family 4 78 156.30 44 97.87 New Rough colony protein B, tight adherence - tad - subunit
RcpC PF16976 Family 157 2390 112.10 27 39.24 New Flp pilus assembly protein RcpC/CpaB
RCR PF12273 Family 52 354 131.60 24 70.56 Changed Chitin synthesis regulation, resistance to Congo red
RcsC PF09456 Domain 27 3188 90.90 74 9.74 Changed RcsC Alpha-Beta-Loop (ABL)
RCSD PF05177 Family 8 64 87.80 37 12.02 Changed RCSD region
RcsD_ABL PF16359 Domain 20 3208 102.40 84 11.85 New RcsD-ABL domain
RcsF PF16358 Family 18 3275 107.50 83 84.24 New RcsF lipoprotein
RD3 PF14473 Family 36 129 127.10 42 64.40 Changed RD3 protein
RDD PF06271 Family 63 18493 135.40 21 58.47 Changed RDD family
RdgC PF04381 Family 130 5504 292.00 61 96.65 Changed Putative exonuclease, RdgC
RDM PF11002 Domain 23 80 42.00 63 13.46 Changed RFPL defining motif (RDM)
RdRP PF05183 Family 309 1575 479.00 23 47.27 Changed RNA dependent RNA polymerase
RdRP_1 PF00680 Domain 12 20248 240.90 23 26.91 Changed RNA dependent RNA polymerase
RdRP_2 PF00978 Family 36 3914 262.30 23 29.45 Changed RNA dependent RNA polymerase
RdRP_3 PF00998 Family 33 24337 205.80 64 45.95 Changed Viral RNA dependent RNA polymerase
RdRP_4 PF02123 Family 28 2044 443.80 36 58.68 Changed Viral RNA-directed RNA-polymerase
RdRP_5 PF07925 Family 3 170 559.40 65 99.58 Changed Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3 PF09231 Domain 2 12 964.70 62 94.51 Changed Rice dwarf virus p3
Rdx PF10262 Family 278 2724 81.30 43 65.53 Changed Rdx family
Read-through PF16814 Domain 1 64 183.30 76 60.35 New Read-through domain
RebB PF11747 Family 33 1052 66.10 47 67.70 Changed Killing trait
REC114-like PF15165 Family 13 90 169.40 37 87.00 Changed Meiotic recombination protein REC114-like
RecA PF00154 Family 16 31968 227.30 67 72.59 Changed recA bacterial DNA recombination protein
RecA_dep_nuc PF16786 Domain 4 292 98.10 45 67.37 New Recombination enhancement, RecA-dependent nuclease
Receptor_2B4 PF11465 Domain 3 108 98.40 30 32.18 Changed Natural killer cell receptor 2B4
Receptor_IA-2 PF11548 Family 28 191 83.50 46 9.50 Changed Protein-tyrosine phosphatase receptor IA-2
Recep_L_domain PF01030 Domain 53 3308 112.00 25 20.47 Changed Receptor L domain
Recombinase PF07508 Family 72 22381 100.10 27 20.69 Changed Recombinase
RecO_C PF02565 Family 104 18037 151.40 24 61.13 Changed Recombination protein O C terminal
RecO_N PF11967 Domain 104 17883 77.30 30 31.21 Changed Recombination protein O N terminal
RecO_N_2 PF13114 Domain 16 495 71.30 68 34.51 Changed RecO N terminal
RecQ5 PF06959 Family 13 88 178.40 44 20.33 Changed RecQ helicase protein-like 5 (RecQ5)
RecQ_Zn_bind PF16124 Domain 855 21501 65.20 31 10.77 New RecQ zinc-binding
RecR PF02132 Family 945 18483 39.90 41 20.00 Changed RecR protein
RecT PF03837 Family 79 10578 185.20 27 67.04 Changed RecT family
RecU PF03838 Domain 208 7534 163.50 64 81.10 Changed Recombination protein U
RecX PF02631 Family 104 18818 119.90 27 62.75 Changed RecX family
Red1 PF07964 Family 7 49 532.10 31 84.25 Changed Rec10 / Red1
Redoxin PF08534 Domain 54 30224 141.00 26 74.44 Changed Redoxin
Reductase_C PF14759 Domain 80 9047 82.10 32 20.09 Changed Reductase C-terminal
RED_C PF07807 Family 18 241 108.30 58 19.72 Changed RED-like protein C-terminal region
RED_N PF07808 Family 31 547 184.00 28 36.51 Changed RED-like protein N-terminal region
Reeler PF02014 Family 165 817 121.40 24 19.84 Changed Reeler domain
REF PF05755 Family 30 197 178.50 40 80.31 Changed Rubber elongation factor protein (REF)
REGB_T4 PF10715 Domain 1 68 148.10 72 97.55 Changed Endoribonuclease RegB T4-bacteriophage encoded
Regulator_TrmB PF11495 Family 25 1903 153.20 20 54.13 Changed Archaeal transcriptional regulator TrmB
Reg_prop PF07494 Repeat 668 16664 23.90 32 5.90 Changed Two component regulator propeller
REJ PF02010 Family 25 1167 286.40 15 17.88 Changed REJ domain
Relaxase PF03432 Family 17 8489 225.50 16 49.59 Changed Relaxase/Mobilisation nuclease domain
RelA_SpoT PF04607 Family 95 41340 115.50 41 21.84 Changed Region found in RelA / SpoT proteins
RelB PF04221 Domain 6 9147 79.20 26 86.66 Changed RelB antitoxin
RelB_leu_zip PF16180 Domain 6 46 81.20 69 16.64 New RelB leucine zipper
RelB_transactiv PF16181 Domain 3 55 163.70 77 31.03 New RelB transactivation domain
RelE PF06296 Family 22 4276 104.80 34 92.76 Changed RelE toxin of RelE / RelB toxin-antitoxin system
RELT PF12606 Family 32 442 44.50 36 27.51 Changed Tumour necrosis factor receptor superfamily member 19
Remorin_C PF03763 Family 126 849 101.40 34 30.73 Changed Remorin, C-terminal region
Remorin_N PF03766 Family 24 154 55.80 43 29.16 Changed Remorin, N-terminal region
Renin_r PF07850 Family 34 198 99.20 43 28.31 Changed Renin receptor-like protein
Reoviridae_Vp9 PF08978 Domain 2 14 200.80 61 94.23 Changed Reoviridae VP9
Reovirus_cap PF00979 Family 5 223 266.20 51 99.20 Changed Reovirus outer capsid protein, Sigma 3
Reovirus_L2 PF06016 Family 3 85 1224.40 40 99.68 Changed Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2 PF05993 Family 3 91 621.30 42 98.34 Changed Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2 PF07781 Family 3 88 655.00 37 93.30 Changed Reovirus minor core protein Mu-2
Reo_P9 PF06043 Family 1 73 287.60 61 99.94 Changed Reovirus P9-like family
Reo_sigma1 PF01664 Family 3 77 210.30 62 46.73 Changed Reovirus viral attachment protein sigma 1
Reo_sigmaC PF04582 Family 4 258 240.60 35 92.41 Changed Reovirus sigma C capsid protein
Rep-A_N PF04057 Domain 11 729 97.60 28 16.43 Changed Replication factor-A protein 1, N-terminal domain
RepA1_leader PF08048 Family 5 234 24.70 74 97.56 Changed Tap RepA1 leader peptide
RepA_C PF04796 Family 3 337 157.40 33 48.56 Changed Plasmid encoded RepA protein
RepA_N PF06970 Family 21 5964 74.60 46 30.51 Changed Replication initiator protein A (RepA) N-terminus
REPA_OB_2 PF16900 Domain 117 1147 97.30 29 16.42 New Replication protein A OB domain
RepB PF07506 Family 15 1258 168.40 22 54.47 Changed RepB plasmid partitioning protein
RepB-RCR_reg PF10723 Domain 3 2077 77.10 54 96.27 Changed Replication regulatory protein RepB
RepB_primase PF16793 Domain 6 96 201.30 35 42.30 New RepB DNA-primase from phage plasmid
RepC PF06504 Family 5 348 254.60 68 92.04 Changed Replication protein C (RepC)
RepL PF05732 Family 4 1787 141.50 28 81.65 Changed Firmicute plasmid replication protein (RepL)
Replicase PF03090 Family 20 1115 120.50 43 39.19 Changed Replicase family
Replic_Relax PF13814 Family 46 1342 161.30 21 64.37 Changed Replication-relaxation
Repressor_Mnt PF11423 Family 2 251 27.70 72 33.91 Changed Regulatory protein Mnt
Reprolysin PF01421 Domain 19 4366 187.30 28 23.08 Changed Reprolysin (M12B) family zinc metalloprotease
Reprolysin_2 PF13574 Domain 28 904 180.10 22 25.89 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_3 PF13582 Domain 46 880 131.20 26 24.37 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_4 PF13583 Domain 9 908 161.10 21 28.39 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_5 PF13688 Family 47 846 197.10 19 29.53 Changed Metallo-peptidase family M12
Rep_1 PF01446 Family 1 9548 126.60 42 76.08 Changed Replication protein
Rep_2 PF01719 Family 12 992 177.30 35 73.19 Changed Plasmid replication protein
Rep_3 PF01051 Family 166 7683 221.30 20 73.71 Changed Initiator Replication protein
Rep_4 PF05797 Family 2 22 253.70 37 82.09 Changed Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3 PF08661 Domain 20 599 105.80 23 83.25 Changed Replication factor A protein 3
Rep_fac-A_C PF08646 Family 30 1434 137.80 24 24.59 Changed Replication factor-A C terminal domain
Rep_fac_C PF08542 Domain 696 2966 93.40 19 26.11 Changed Replication factor C C-terminal domain
Rep_N PF08724 Domain 9 359 158.40 44 25.79 Changed Rep protein catalytic domain like
Rep_Org_C PF06926 Family 3 43 91.50 58 36.00 Changed Putative replisome organiser protein C-terminus
Rep_trans PF02486 Family 45 6658 191.60 32 53.57 Changed Replication initiation factor
Requiem_N PF14051 Family 32 396 69.80 67 18.24 Changed N-terminal domain of DPF2/REQ.
Rer1 PF03248 Family 133 843 156.00 50 81.13 Changed Rer1 family
RES PF08808 Domain 182 7682 160.40 25 69.13 Changed RES domain
ResB PF05140 Family 215 5822 344.30 26 66.77 Changed ResB-like family
ResIII PF04851 Family 55 85706 165.20 19 21.34 Changed Type III restriction enzyme, res subunit
Resistin PF06954 Family 33 89 79.70 53 68.73 Changed Resistin
Resolvase PF00239 Domain 129 63945 135.30 25 46.75 Changed Resolvase, N terminal domain
RESP18 PF14948 Family 15 156 92.80 39 12.33 Changed RESP18 domain
Response_reg PF00072 Domain 52 547587 111.50 26 33.24 Changed Response regulator receiver domain
RestrictionMunI PF11407 Family 3 12 155.50 46 97.19 Changed Type II restriction enzyme MunI
RestrictionSfiI PF11487 Family 1 7 232.30 52 94.59 Changed Type II restriction enzyme SfiI
Reticulon PF02453 Family 248 2053 152.50 26 43.90 Changed Reticulon
Retinal PF15449 Family 19 80 898.70 41 97.05 Changed Retinal protein
Retinin_C PF04527 Family 21 217 74.20 44 52.22 Changed Drosophila Retinin like protein
Retrotrans_gag PF03732 Family 57 6306 93.20 18 11.97 Changed Retrotransposon gag protein
Retro_M PF02813 Family 1 237 81.60 88 15.56 Changed Retroviral M domain
REV PF00424 Family 2 21666 71.00 61 78.41 Changed REV protein (anti-repression trans-activator protein)
REV1_C PF16727 Domain 13 272 124.20 26 11.24 New DNA repair protein REV1 C-terminal domain
RexA PF15969 Family 1 59 200.10 44 94.74 New Intracellular sensor of Lambda phage, Abi component
RexB PF15968 Family 1 32 122.60 67 96.74 New Membrane-anchored ion channel, Abi component
RE_AccI PF09545 Family 3 29 229.00 34 93.89 Changed AccI restriction endonuclease
RE_Alw26IDE PF09665 Family 1 120 471.10 77 88.10 Changed Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI PF09491 Family 18 487 365.30 25 73.98 Changed AlwI restriction endonuclease
RE_ApaLI PF09499 Family 3 500 54.20 47 83.93 Changed ApaLI-like restriction endonuclease
RE_Bpu10I PF09549 Family 9 62 189.40 36 70.92 Changed Bpu10I restriction endonuclease
RE_Bsp6I PF09504 Family 3 27 170.40 42 94.65 Changed Bsp6I restriction endonuclease
RE_BstXI PF09552 Family 2 22 210.20 40 60.84 Changed BstXI restriction endonuclease
RE_CfrBI PF09516 Family 5 218 203.20 72 86.07 Changed CfrBI restriction endonuclease
RE_Eco29kI PF09517 Family 14 121 155.00 41 70.74 Changed Eco29kI restriction endonuclease
RE_Eco47II PF09553 Family 18 179 194.30 44 79.31 Changed Eco47II restriction endonuclease
RE_EcoO109I PF14511 Family 17 159 187.60 31 75.89 Changed Type II restriction endonuclease EcoO109I
RE_HaeII PF09554 Family 3 39 322.70 63 93.26 Changed HaeII restriction endonuclease
RE_HaeIII PF09556 Family 12 136 272.80 50 91.13 Changed HaeIII restriction endonuclease
RE_HindIII PF09518 Family 4 94 279.60 54 92.14 Changed HindIII restriction endonuclease
RE_HindVP PF09519 Family 13 117 253.10 43 87.10 Changed HindVP restriction endonuclease
RE_HpaII PF09561 Family 24 302 331.60 48 93.66 Changed HpaII restriction endonuclease
RE_LlaJI PF09563 Family 4 244 311.40 25 73.74 Changed LlaJI restriction endonuclease
RE_LlaMI PF09562 Family 2 11 260.10 52 98.93 Changed LlaMI restriction endonuclease
RE_MamI PF09567 Family 2 11 235.50 27 75.32 Changed MamI restriction endonuclease
RE_MjaI PF09568 Family 16 73 161.20 30 82.64 Changed MjaI restriction endonuclease
RE_NgoBV PF09564 Family 2 323 146.30 58 97.13 Changed NgoBV restriction endonuclease
RE_NgoFVII PF09565 Domain 7 188 224.10 19 72.28 Changed NgoFVII restriction endonuclease
RE_NgoPII PF09521 Family 11 121 188.70 42 92.70 Changed NgoPII restriction endonuclease
RE_R_Pab1 PF09522 Domain 3 291 97.20 77 48.34 Changed R.Pab1 restriction endonuclease
RE_SacI PF09566 Family 3 29 322.00 24 94.62 Changed SacI restriction endonuclease
RE_ScaI PF09569 Family 4 26 180.60 55 93.68 Changed ScaI restriction endonuclease
RE_SinI PF09570 Family 3 81 197.80 47 83.17 Changed SinI restriction endonuclease
RE_TaqI PF09573 Family 1 13 199.30 46 95.01 Changed TaqI restriction endonuclease
RE_TdeIII PF09520 Family 21 128 215.50 26 88.96 Changed Type II restriction endonuclease, TdeIII
RE_XamI PF09572 Family 5 54 221.40 36 79.47 Changed XamI restriction endonuclease
RE_XcyI PF09571 Family 3 17 292.50 43 92.25 Changed XcyI restriction endonuclease
RF-1 PF00472 Family 1098 48364 111.90 45 36.40 Changed RF-1 domain
RF3_C PF16658 Domain 327 14492 127.80 51 24.50 New Class II release factor RF3, C-terminal domain
RFamide_26RFa PF11109 Family 17 46 112.70 52 90.80 Changed Orexigenic neuropeptide Qrfp/P518
RFC1 PF08519 Domain 172 728 148.80 35 16.89 Changed Replication factor RFC1 C terminal domain
Rft-1 PF04506 Family 35 696 418.60 25 90.85 Changed Rft protein
RFX1_trans_act PF04589 Family 17 274 128.80 44 20.03 Changed RFX1 transcription activation region
RFX5_DNA_bdg PF14621 Domain 11 53 213.70 76 34.93 Changed RFX5 DNA-binding domain
RFXA_RFXANK_bdg PF15289 Domain 8 85 111.20 66 57.41 Changed Regulatory factor X-associated C-terminal binding domain
RFX_DNA_binding PF02257 Domain 79 1234 77.20 42 9.01 Changed RFX DNA-binding domain
RGCC PF15151 Family 9 86 114.80 63 85.52 Changed Response gene to complement 32 protein family
RGM_C PF06534 Family 44 331 163.50 48 42.29 Changed Repulsive guidance molecule (RGM) C-terminus
RGM_N PF06535 Family 36 302 162.00 53 40.77 Changed Repulsive guidance molecule (RGM) N-terminus
RGP PF03214 Family 11 388 295.80 48 89.32 Changed Reversibly glycosylated polypeptide
Rgp1 PF08737 Family 79 693 251.50 21 53.84 Changed Rgp1
RgpF PF05045 Family 22 1141 359.30 26 58.95 Changed Rhamnan synthesis protein F
RGS PF00615 Domain 64 6596 122.00 20 23.20 Changed Regulator of G protein signaling domain
RGS-like PF09128 Domain 7 398 169.40 37 14.63 Changed Regulator of G protein signalling-like domain
RGS12_us1 PF16613 Disordered 9 119 113.30 67 10.34 New Unstructured region of RGS12
RGS12_us2 PF16611 Disordered 7 75 70.80 71 6.43 New Unstructured region between RBD and GoLoco
RGS12_usC PF16612 Disordered 12 91 131.40 38 11.27 New C-terminal unstructured region of RGS12
RhaA PF06134 Domain 5 4245 407.40 75 98.41 Changed L-rhamnose isomerase (RhaA)
Rhabdo_glycop PF00974 Family 4 4644 361.10 47 94.91 Changed Rhabdovirus spike glycoprotein
Rhabdo_M1 PF03342 Family 1 31 207.40 62 92.65 Changed Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2 PF04785 Family 2 231 202.00 89 99.91 Changed Rhabdovirus matrix protein M2
Rhabdo_matrix PF03397 Family 1 41 166.20 66 85.36 Changed Rhabdovirus matrix protein
Rhabdo_ncap PF00945 Family 3 9353 210.40 65 92.48 Changed Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2 PF03216 Family 1 320 178.70 58 88.45 Changed Rhabdovirus nucleoprotein
Rhabdo_NV PF02484 Family 1 25 110.50 88 99.68 Changed Rhabdovirus Non-virion protein
Rhamnogal_lyase PF06045 Family 4 326 167.00 44 30.73 Changed Rhamnogalacturonate lyase family
Rhamno_transf PF11316 Family 11 201 209.90 22 70.32 Changed Putative rhamnosyl transferase
RhaT PF06379 Family 2 3536 311.50 84 99.76 Changed L-rhamnose-proton symport protein (RhaT)
RHD3 PF05879 Family 8 935 453.70 25 62.11 Changed Root hair defective 3 GTP-binding protein (RHD3)
RHD_dimer PF16179 Domain 59 1252 97.50 38 12.56 New Rel homology dimerisation domain
RHD_DNA_bind PF00554 Domain 21 1419 155.90 36 22.11 Changed Rel homology DNA-binding domain
RhgB_N PF09284 Domain 59 269 236.20 43 45.83 Changed Rhamnogalacturonan lyase B, N-terminal
RHH_1 PF01402 Domain 32 33433 38.30 28 41.89 Changed Ribbon-helix-helix protein, copG family
RHH_3 PF12651 Domain 15 1053 42.00 33 43.22 Changed Ribbon-helix-helix domain
RHH_4 PF13467 Domain 149 2013 67.10 40 62.77 Changed Ribbon-helix-helix domain
RHH_5 PF07878 Domain 18 326 40.60 26 53.85 Changed CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
RHH_6 PF16762 Domain 11 146 75.80 63 94.28 New Ribbon-helix-helix domain
RHH_7 PF16777 Domain 4 514 53.80 66 68.88 New Transcriptional regulator, RHH-like, CopG
RHIM PF12721 Family 31 276 53.20 21 10.41 Changed RIP homotypic interaction motif
RHINO PF15319 Family 22 68 228.90 45 95.68 Changed RAD9, RAD1, HUS1-interacting nuclear orphan protein
Rhodanese PF00581 Domain 147 131926 101.10 22 46.90 Changed Rhodanese-like domain
Rhodanese_C PF12368 Family 195 10221 66.10 55 19.75 Changed Rhodanase C-terminal
RhodobacterPufX PF11511 Family 5 27 66.90 38 85.60 Changed Intrinsic membrane protein PufX
Rhodopsin_N PF10413 Domain 5 2859 30.40 79 14.92 Changed Amino terminal of the G-protein receptor rhodopsin
RhoGAP PF00620 Domain 85 12212 146.90 25 17.71 Changed RhoGAP domain
RhoGAP-FF1 PF16512 Domain 28 231 79.70 47 5.59 New p190-A and -B Rho GAPs FF domain
RhoGEF PF00621 Domain 177 11795 176.00 21 17.14 Changed RhoGEF domain
RhoGEF67_u1 PF16615 Disordered 16 158 46.60 46 6.30 New Unstructured region one on RhoGEF 6 and 7
RhoGEF67_u2 PF16614 Disordered 5 212 99.70 75 14.11 New Unstructured region two on RhoGEF 6 and 7
Rhomboid PF01694 Family 62 29346 147.60 26 46.86 Changed Rhomboid family
Rhomboid_N PF12122 Family 22 3680 83.60 73 30.36 Changed Cytoplasmic N-terminal domain of rhomboid serine protease
Rhomboid_SP PF12595 Family 11 179 194.30 61 26.10 Changed Rhomboid serine protease
Rho_Binding PF08912 Domain 42 270 67.20 53 5.36 Changed Rho Binding
Rho_GDI PF02115 Domain 44 980 180.80 37 85.23 Changed RHO protein GDP dissociation inhibitor
Rho_N PF07498 Family 116 18272 42.30 39 9.74 Changed Rho termination factor, N-terminal domain
Rho_RNA_bind PF07497 Domain 315 17169 74.80 56 16.15 Changed Rho termination factor, RNA-binding domain
RHS PF03527 Family 42 11354 37.20 54 4.47 Changed RHS protein
RHSP PF07999 Family 3 1337 279.20 30 59.31 Changed Retrotransposon hot spot protein
RHS_repeat PF05593 Repeat 203 69203 37.80 29 15.13 Changed RHS Repeat
Rhv PF00073 Domain 49 45340 135.00 24 42.34 Changed picornavirus capsid protein
Rib PF08428 Repeat 10 3619 65.00 36 19.32 Changed Rib/alpha-like repeat
RIB43A PF05914 Family 70 302 309.20 29 90.40 Changed RIB43A
RibD_C PF01872 Family 27 27062 191.50 25 64.97 Changed RibD C-terminal domain
RIBIOP_C PF04950 Family 231 1883 265.80 33 37.26 Changed 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Ribonuclease PF00545 Domain 163 1600 85.40 35 42.66 Changed ribonuclease
Ribonuclease_3 PF00636 Family 235 10915 107.10 40 37.17 Changed Ribonuclease III domain
Ribonuclease_P PF00825 Family 97 18106 107.10 33 89.93 Changed Ribonuclease P
Ribonuclease_T2 PF00445 Domain 230 7793 175.10 29 74.20 Changed Ribonuclease T2 family
Ribonucleas_3_2 PF11469 Family 4 25 118.90 51 88.43 Changed Ribonuclease III
Ribonucleas_3_3 PF14622 Family 51 19474 128.40 43 52.17 Changed Ribonuclease-III-like
Ribonuc_2-5A PF06479 Family 176 811 124.70 36 13.81 Changed Ribonuclease 2-5A
Ribonuc_L-PSP PF01042 Domain 29 46884 116.50 31 86.15 Changed Endoribonuclease L-PSP
Ribonuc_P_40 PF08584 Family 53 395 234.50 24 70.03 Changed Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N PF08471 Family 68 1154 104.90 54 9.38 Changed Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC PF02867 Family 80 34691 424.70 30 67.98 Changed Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN PF00317 Domain 137 25692 77.20 33 10.37 Changed Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm PF00268 Domain 341 27338 274.30 33 81.69 Changed Ribonucleotide reductase, small chain
Ribophorin_I PF04597 Family 192 755 401.00 30 80.60 Changed Ribophorin I
Ribophorin_II PF05817 Family 42 625 373.30 24 90.31 Changed Oligosaccharyltransferase subunit Ribophorin II
Ribosomal_60s PF00428 Family 76 3544 88.30 31 52.94 Changed 60s Acidic ribosomal protein
Ribosomal_L1 PF00687 Domain 253 21823 196.80 49 83.14 Changed Ribosomal protein L1p/L10e family
Ribosomal_L10 PF00466 Family 125 21181 98.80 39 54.53 Changed Ribosomal protein L10
Ribosomal_L11 PF00298 Domain 809 20785 69.10 59 47.81 Changed Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N PF03946 Domain 350 20758 57.90 66 39.98 Changed Ribosomal protein L11, N-terminal domain
Ribosomal_L12 PF00542 Domain 601 20108 66.80 62 52.44 Changed Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L12_N PF16320 Domain 602 19443 50.30 51 40.02 New Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L13 PF00572 Family 708 20850 123.50 55 82.43 Changed Ribosomal protein L13
Ribosomal_L13e PF01294 Family 118 1050 161.30 48 79.56 Changed Ribosomal protein L13e
Ribosomal_L14 PF00238 Domain 351 21844 120.80 65 98.37 Changed Ribosomal protein L14p/L23e
Ribosomal_L14e PF01929 Family 159 912 73.10 37 46.03 Changed Ribosomal protein L14
Ribosomal_L15e PF00827 Family 103 1367 172.80 55 86.12 Changed Ribosomal L15
Ribosomal_L16 PF00252 Family 541 23732 124.70 53 88.97 Changed Ribosomal protein L16p/L10e
Ribosomal_L17 PF01196 Family 706 19640 101.80 56 74.08 Changed Ribosomal protein L17
Ribosomal_L18ae PF01775 Domain 63 1270 104.50 44 66.12 Changed Ribosomal L18ae/LX protein domain
Ribosomal_L18e PF00828 Family 582 21348 117.70 47 77.72 Changed Ribosomal protein L18e/L15
Ribosomal_L18p PF00861 Family 27 21068 115.60 46 89.56 Changed Ribosomal L18p/L5e family
Ribosomal_L18_c PF14204 Domain 172 1145 88.00 41 31.19 Changed Ribosomal L18 C-terminal region
Ribosomal_L19 PF01245 Family 498 19643 110.90 61 90.64 Changed Ribosomal protein L19
Ribosomal_L19e PF01280 Family 144 1380 134.20 54 52.96 Changed Ribosomal protein L19e
Ribosomal_L2 PF00181 Domain 26 22290 76.80 63 28.13 Changed Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20 PF00453 Family 447 20536 105.70 59 88.68 Changed Ribosomal protein L20
Ribosomal_L21e PF01157 Family 181 1590 90.20 49 58.20 Changed Ribosomal protein L21e
Ribosomal_L21p PF00829 Family 795 19567 95.20 49 86.39 Changed Ribosomal prokaryotic L21 protein
Ribosomal_L22 PF00237 Domain 880 22240 105.30 50 79.67 Changed Ribosomal protein L22p/L17e
Ribosomal_L22e PF01776 Family 109 990 105.00 50 77.69 Changed Ribosomal L22e protein family
Ribosomal_L23 PF00276 Family 741 21926 85.40 42 81.99 Changed Ribosomal protein L23
Ribosomal_L23eN PF03939 Family 146 1039 50.90 53 29.18 Changed Ribosomal protein L23, N-terminal domain
Ribosomal_L24e PF01246 Family 123 1911 62.90 44 39.29 Changed Ribosomal protein L24e
Ribosomal_L25p PF01386 Domain 771 16552 87.70 38 49.38 Changed Ribosomal L25p family
Ribosomal_L26 PF16906 Family 117 1323 110.80 51 77.48 New Ribosomal proteins L26 eukaryotic, L24P archaeal
Ribosomal_L27 PF01016 Family 448 19619 79.90 65 84.83 Changed Ribosomal L27 protein
Ribosomal_L27e PF01777 Family 105 964 82.70 48 57.18 Changed Ribosomal L27e protein family
Ribosomal_L28 PF00830 Family 517 22790 58.50 44 76.39 Changed Ribosomal L28 family
Ribosomal_L28e PF01778 Family 252 1427 112.40 31 51.32 Changed Ribosomal L28e protein family
Ribosomal_L29 PF00831 Family 890 20051 56.80 49 79.39 Changed Ribosomal L29 protein
Ribosomal_L29e PF01779 Family 86 799 39.40 66 40.60 Changed Ribosomal L29e protein family
Ribosomal_L2_C PF03947 Domain 477 22858 124.60 61 46.25 Changed Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3 PF00297 Family 7 21660 149.00 41 66.58 Changed Ribosomal protein L3
Ribosomal_L30 PF00327 Domain 908 19693 50.90 47 66.49 Changed Ribosomal protein L30p/L7e
Ribosomal_L30_N PF08079 Domain 174 1185 68.70 35 27.83 Changed Ribosomal L30 N-terminal domain
Ribosomal_L31 PF01197 Family 629 24739 72.30 49 90.11 Changed Ribosomal protein L31
Ribosomal_L31e PF01198 Family 122 1482 78.00 48 62.83 Changed Ribosomal protein L31e
Ribosomal_L32e PF01655 Family 189 1558 101.60 50 68.45 Changed Ribosomal protein L32
Ribosomal_L32p PF01783 Family 126 20282 54.20 39 88.62 Changed Ribosomal L32p protein family
Ribosomal_L33 PF00471 Family 452 28944 47.40 49 90.44 Changed Ribosomal protein L33
Ribosomal_L34 PF00468 Family 334 17265 43.90 67 91.43 Changed Ribosomal protein L34
Ribosomal_L34e PF01199 Family 104 1062 89.90 49 73.61 Changed Ribosomal protein L34e
Ribosomal_L35Ae PF01247 Family 112 965 93.20 50 71.88 Changed Ribosomal protein L35Ae
Ribosomal_L35p PF01632 Family 685 18928 60.70 51 89.94 Changed Ribosomal protein L35
Ribosomal_L36 PF00444 Domain 221 21141 38.20 63 93.88 Changed Ribosomal protein L36
Ribosomal_L36e PF01158 Family 95 967 91.60 50 74.81 Changed Ribosomal protein L36e
Ribosomal_L37 PF08561 Family 85 535 85.40 29 54.49 Changed Mitochondrial ribosomal protein L37
Ribosomal_L37ae PF01780 Family 117 1167 82.20 52 81.68 Changed Ribosomal L37ae protein family
Ribosomal_L37e PF01907 Family 92 1137 50.70 58 58.16 Changed Ribosomal protein L37e
Ribosomal_L38e PF01781 Family 99 789 68.60 55 79.70 Changed Ribosomal L38e protein family
Ribosomal_L39 PF00832 Family 88 953 41.00 58 64.46 Changed Ribosomal L39 protein
Ribosomal_L4 PF00573 Family 125 21052 189.60 44 87.07 Changed Ribosomal protein L4/L1 family
Ribosomal_L40e PF01020 Family 33 1088 46.60 61 37.29 Changed Ribosomal L40e family
Ribosomal_L41 PF05162 Family 6 194 24.80 84 42.19 Changed Ribosomal protein L41
Ribosomal_L44 PF00935 Family 92 1230 75.10 57 62.23 Changed Ribosomal protein L44
Ribosomal_L5 PF00281 Domain 623 20511 56.60 59 31.09 Changed Ribosomal protein L5
Ribosomal_L50 PF10501 Domain 47 344 107.30 19 34.65 Changed Ribosomal subunit 39S
Ribosomal_L5_C PF00673 Domain 496 20746 94.00 62 51.55 Changed ribosomal L5P family C-terminus
Ribosomal_L6 PF00347 Domain 94 41133 74.30 30 82.01 Changed Ribosomal protein L6
Ribosomal_L6e PF01159 Family 180 1189 101.40 44 41.84 Changed Ribosomal protein L6e
Ribosomal_L6e_N PF03868 Domain 59 600 53.20 43 20.60 Changed Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae PF01248 Domain 52 18233 90.20 29 70.21 Changed Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C PF03948 Domain 1052 18991 85.50 40 56.20 Changed Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N PF01281 Domain 684 19279 46.90 52 30.22 Changed Ribosomal protein L9, N-terminal domain
Ribosomal_S10 PF00338 Family 434 21207 94.60 59 86.73 Changed Ribosomal protein S10p/S20e
Ribosomal_S11 PF00411 Family 7 21497 109.70 63 81.99 Changed Ribosomal protein S11
Ribosomal_S13 PF00416 Family 11 22905 97.20 55 86.85 Changed Ribosomal protein S13/S18
Ribosomal_S13_N PF08069 Domain 126 1163 58.40 54 37.17 Changed Ribosomal S13/S15 N-terminal domain
Ribosomal_S14 PF00253 Family 428 29169 53.10 53 63.56 Changed Ribosomal protein S14p/S29e
Ribosomal_S15 PF00312 Domain 770 21495 80.20 54 81.02 Changed Ribosomal protein S15
Ribosomal_S16 PF00886 Family 750 21025 58.80 50 58.99 Changed Ribosomal protein S16
Ribosomal_S17 PF00366 Domain 686 20644 67.80 58 70.45 Changed Ribosomal protein S17
Ribosomal_S17e PF00833 Family 54 1255 102.80 50 77.72 Changed Ribosomal S17
Ribosomal_S17_N PF16205 Family 81 922 65.30 61 39.77 New Ribosomal_S17 N-terminal
Ribosomal_S18 PF01084 Family 440 22558 51.70 57 59.51 Changed Ribosomal protein S18
Ribosomal_S19 PF00203 Domain 376 23404 78.60 64 84.30 Changed Ribosomal protein S19
Ribosomal_S19e PF01090 Family 177 1269 129.10 43 82.12 Changed Ribosomal protein S19e
Ribosomal_S2 PF00318 Family 487 24137 196.00 48 81.56 Changed Ribosomal protein S2
Ribosomal_S20p PF01649 Family 788 18809 80.30 45 94.76 Changed Ribosomal protein S20
Ribosomal_S21 PF01165 Family 384 17132 55.10 55 79.84 Changed Ribosomal protein S21
Ribosomal_S21e PF01249 Family 78 834 76.90 54 72.10 Changed Ribosomal protein S21e
Ribosomal_S22 PF08136 Family 4 2825 44.10 87 96.28 Changed 30S ribosomal protein subunit S22 family
Ribosomal_S24e PF01282 Family 182 1375 78.10 45 59.18 Changed Ribosomal protein S24e
Ribosomal_S25 PF03297 Family 84 1081 96.70 48 77.84 Changed S25 ribosomal protein
Ribosomal_S26e PF01283 Family 37 1026 102.80 57 76.51 Changed Ribosomal protein S26e
Ribosomal_S27 PF01599 Domain 76 1201 44.60 57 31.74 Changed Ribosomal protein S27a
Ribosomal_S27e PF01667 Family 7 1295 54.10 58 59.15 Changed Ribosomal protein S27
Ribosomal_S28e PF01200 Family 50 1090 61.80 59 78.96 Changed Ribosomal protein S28e
Ribosomal_S30 PF04758 Family 39 883 56.50 62 59.17 Changed Ribosomal protein S30
Ribosomal_S30AE PF02482 Family 966 23377 93.20 34 61.82 Changed Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae PF01015 Family 159 1576 184.20 48 79.59 Changed Ribosomal S3Ae family
Ribosomal_S3_C PF00189 Domain 342 23991 82.30 60 33.64 Changed Ribosomal protein S3, C-terminal domain
Ribosomal_S4 PF00163 Family 524 28181 88.50 45 44.65 Changed Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e PF00900 Family 197 1488 72.60 51 28.88 Changed Ribosomal family S4e
Ribosomal_S4Pg PF11993 Family 19 401 162.90 48 96.87 Changed Ribosomal S4P (gammaproteobacterial)
Ribosomal_S5 PF00333 Domain 469 21241 64.80 62 34.82 Changed Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 Domain 591 21047 71.50 53 38.40 Changed Ribosomal protein S5, C-terminal domain
Ribosomal_S6 PF01250 Domain 919 19586 89.90 40 78.69 Changed Ribosomal protein S6
Ribosomal_S6e PF01092 Family 134 1416 116.20 52 52.79 Changed Ribosomal protein S6e
Ribosomal_S7 PF00177 Domain 510 24321 147.20 50 90.22 Changed Ribosomal protein S7p/S5e
Ribosomal_S7e PF01251 Family 77 1030 170.20 51 88.58 Changed Ribosomal protein S7e
Ribosomal_S8 PF00410 Domain 779 21999 126.90 50 96.36 Changed Ribosomal protein S8
Ribosomal_S8e PF01201 Family 289 2140 187.90 35 89.21 Changed Ribosomal protein S8e
Ribosomal_S9 PF00380 Family 777 20867 120.90 55 85.36 Changed Ribosomal protein S9/S16
Ribosomal_TL5_C PF14693 Domain 757 11954 84.20 40 40.20 Changed Ribosomal protein TL5, C-terminal domain
Ribosom_S12_S23 PF00164 Family 12 22460 124.20 67 96.05 Changed Ribosomal protein S12/S23
Ribosom_S30AE_C PF16321 Domain 400 13338 56.90 48 28.06 New Sigma 54 modulation/S30EA ribosomal protein C terminus
Ribos_L4_asso_C PF14374 Domain 109 869 74.70 43 20.15 Changed 60S ribosomal protein L4 C-terminal domain
Ribul_P_3_epim PF00834 Domain 12 25537 196.20 44 88.33 Changed Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A PF06026 Family 601 15303 168.60 48 74.19 Changed Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse PF02267 Domain 37 211 207.80 36 78.86 Changed ADP-ribosyl cyclase
Rib_recp_KP_reg PF05104 Family 16 116 131.70 46 13.73 Changed Ribosome receptor lysine/proline rich region
RIC1 PF07064 Family 86 574 248.90 31 21.64 Changed RIC1
RIC3 PF15361 Family 32 225 180.70 24 44.78 Changed Resistance to inhibitors of cholinesterase homologue 3
Ric8 PF10165 Family 118 597 384.50 28 81.45 Changed Guanine nucleotide exchange factor synembryn
RICH PF05062 Domain 26 675 75.50 39 16.13 Changed RICH domain
RicinB_lectin_2 PF14200 Domain 49 3138 100.20 22 25.62 Changed Ricin-type beta-trefoil lectin domain-like
Ricin_B_lectin PF00652 Domain 85 7775 119.30 25 29.34 Changed Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti PF05433 Family 95 16985 42.70 46 28.77 Changed Glycine zipper 2TM domain
RICTOR_M PF14666 Domain 107 498 211.00 34 15.43 Changed Rapamycin-insensitive companion of mTOR, middle domain
RICTOR_N PF14664 Domain 105 528 335.70 29 26.67 Changed Rapamycin-insensitive companion of mTOR, N-term
RICTOR_phospho PF14665 Domain 10 77 103.60 66 6.56 Changed Rapamycin-insensitive companion of mTOR, phosphorylation-site
RICTOR_V PF14668 Domain 111 465 71.10 44 5.19 Changed Rapamycin-insensitive companion of mTOR, domain 5
Rieske PF00355 Domain 56 46083 93.80 21 28.73 Changed Rieske [2Fe-2S] domain
Rieske_2 PF13806 Domain 50 11652 102.40 47 56.43 Changed Rieske-like [2Fe-2S] domain
Rif1_N PF12231 Family 70 395 332.00 22 20.61 Changed Rap1-interacting factor 1 N terminal
Rifin_STEVOR PF02009 Family 161 2605 239.60 26 88.22 Changed Rifin/stevor family
RIG-I_C-RD PF11648 Family 75 381 113.50 32 13.97 Changed C-terminal domain of RIG-I
RIH_assoc PF08454 Family 72 1047 109.50 42 3.50 Changed RyR and IP3R Homology associated
RIIa PF02197 Domain 12 1004 37.00 31 10.41 Changed Regulatory subunit of type II PKA R-subunit
RII_binding_1 PF10522 Motif 9 274 17.90 40 1.53 Changed RII binding domain
RILP PF11461 Family 37 287 55.70 44 16.69 Changed Rab interacting lysosomal protein
RimK PF08443 Domain 4 7327 177.10 44 47.53 Changed RimK-like ATP-grasp domain
RimM PF01782 Domain 130 18443 84.00 32 47.31 Changed RimM N-terminal domain
RinB PF06116 Family 2 10414 46.50 86 91.14 Changed Transcriptional activator RinB
RINGv PF12906 Domain 21 3681 49.90 37 10.17 Changed RING-variant domain
Ring_hydroxyl_A PF00848 Domain 48 17123 214.40 18 55.76 Changed Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B PF00866 Domain 24 6333 141.10 33 84.52 Changed Ring hydroxylating beta subunit
RINT1_TIP1 PF04437 Family 90 731 436.50 20 61.29 Changed RINT-1 / TIP-1 family
RIO1 PF01163 Family 27 3615 171.10 27 46.81 Changed RIO1 family
Rio2_N PF09202 Domain 27 850 81.80 44 19.73 Changed Rio2, N-terminal
RIP PF00161 Domain 44 1809 190.40 34 60.93 Changed Ribosome inactivating protein
Ripply PF14998 Family 33 151 78.80 50 60.04 Changed Transcription Regulator
RisS_PPD PF16524 Domain 37 338 106.90 49 24.41 New Periplasmic domain of Sensor histidine kinase RisS
RITA PF17066 Family 11 68 233.20 53 95.52 New RBPJ-interacting and tubulin associated protein
RIX1 PF08167 Domain 97 434 187.20 22 23.93 Changed rRNA processing/ribosome biogenesis
RL11D PF11088 Family 2 38 93.10 48 92.71 Changed Glycoprotein encoding membrane proteins RL5A and RL6
RLAN PF14401 Family 81 1089 148.80 44 30.24 Changed RimK-like ATPgrasp N-terminal domain
RLI PF04068 Family 70 1750 33.00 37 7.37 Changed Possible Fer4-like domain in RNase L inhibitor, RLI
RLL PF10036 Family 48 273 220.70 37 93.41 Changed Putative carnitine deficiency-associated protein
RloB PF13707 Domain 141 1082 179.30 22 86.84 Changed RloB-like protein
RMF PF04957 Family 31 2646 53.10 79 91.34 Changed Ribosome modulation factor
RMI1_C PF16099 Family 31 197 135.00 27 23.75 New Recq-mediated genome instability protein 1, C-terminal OB-fold
RMI1_N PF08585 Domain 114 866 168.60 23 36.13 Changed RecQ mediated genome instability protein
RMI2 PF16100 Family 31 144 116.00 31 68.77 New RecQ-mediated genome instability protein 2
RmlD_sub_bind PF04321 Domain 25 12900 276.70 32 92.71 Changed RmlD substrate binding domain
RMMBL PF07521 Motif 100 23836 39.80 40 7.10 Changed RNA-metabolising metallo-beta-lactamase
RMP PF14996 Family 25 125 137.40 37 61.82 Changed Retinal Maintenance
RmuC PF02646 Family 365 8653 292.90 38 64.32 Changed RmuC family
RNA12 PF10443 Family 17 359 345.60 33 51.10 Changed RNA12 protein
RnaseA PF00074 Domain 172 1244 116.10 32 74.82 Changed Pancreatic ribonuclease
RNaseH_C PF09293 Domain 2 73 116.50 39 39.45 Changed T4 RNase H, C terminal
RNaseH_like PF04308 Family 58 462 148.70 50 87.59 Changed Ribonuclease H-like
RNase_E_G PF10150 Family 624 17360 267.80 45 35.75 Changed Ribonuclease E/G family
RNase_H PF00075 Domain 24 31511 125.50 44 22.48 Changed RNase H
RNase_H2-Ydr279 PF09468 Family 127 619 294.20 20 87.74 Changed Ydr279p protein family (RNase H2 complex component)
RNase_H2_suC PF08615 Family 20 538 126.40 24 66.84 Changed Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
RNase_HII PF01351 Family 11 26937 183.50 38 73.24 Changed Ribonuclease HII
RNase_H_2 PF13482 Domain 83 3752 177.70 36 23.29 Changed RNase_H superfamily
RNase_PH PF01138 Domain 165 52369 132.60 32 39.96 Changed 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 Domain 90 47498 68.90 33 19.57 Changed 3' exoribonuclease family, domain 2
RNase_P_p30 PF01876 Domain 41 886 202.00 22 69.12 Changed RNase P subunit p30
RNase_P_pop3 PF08228 Family 5 193 151.10 23 59.64 Changed RNase P subunit Pop3
RNase_P_Rpp14 PF01900 Family 221 934 108.50 24 67.32 Changed Rpp14/Pop5 family
RNase_T PF00929 Family 41 71774 160.60 24 34.19 Changed Exonuclease
RNase_Zc3h12a PF11977 Domain 28 917 147.20 37 22.31 Changed Zc3h12a-like Ribonuclease NYN domain
RNase_Zc3h12a_2 PF14626 Family 4 22 118.10 29 20.70 Changed Zc3h12a-like Ribonuclease NYN domain
RNA_bind PF08675 Domain 11 137 76.60 59 13.45 Changed RNA binding domain
RNA_binding PF01877 Family 99 523 113.50 26 77.01 Changed RNA binding
RNA_bind_2 PF10133 Family 82 431 59.50 51 94.11 Changed Predicted RNA-binding protein
RNA_capsid PF03035 Family 34 1614 173.30 60 98.57 Changed Calicivirus putative RNA polymerase/capsid protein
RNA_GG_bind PF10258 Domain 66 307 82.70 37 17.78 Changed PHAX RNA-binding domain
RNA_helicase PF00910 Domain 99 6439 97.00 35 6.86 Changed RNA helicase
RNA_ligase PF09414 Family 22 1188 176.00 24 56.55 Changed RNA ligase
RNA_lig_T4_1 PF09511 Family 143 628 217.30 28 32.45 Changed RNA ligase
RNA_Me_trans PF04252 Family 97 395 186.40 40 82.52 Changed Predicted SAM-dependent RNA methyltransferase
RNA_pol PF00940 Family 227 1145 396.00 35 41.62 Changed DNA-dependent RNA polymerase
RNA_polI_A14 PF08203 Family 24 67 77.20 44 51.62 Changed Yeast RNA polymerase I subunit RPA14
RNA_polI_A34 PF08208 Family 79 353 220.00 19 58.53 Changed DNA-directed RNA polymerase I subunit RPA34.5
RNA_pol_3_Rpc31 PF11705 Family 98 614 217.50 22 92.00 Changed DNA-directed RNA polymerase III subunit Rpc31
RNA_pol_A_bac PF01000 Domain 59 23526 120.50 38 37.60 Changed RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD PF03118 Domain 64 21776 66.00 48 20.68 Changed Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_inhib PF16857 Domain 12 47 46.70 55 78.43 New RNA polymerase inhibitor
RNA_pol_I_A49 PF06870 Family 110 589 345.80 20 84.53 Changed A49-like RNA polymerase I associated factor
RNA_pol_I_TF PF04090 Family 10 216 180.70 20 41.50 Changed RNA polymerase I specific initiation factor
RNA_pol_L PF01193 Domain 477 23700 198.50 41 62.36 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2 PF13656 Domain 322 1588 74.20 33 55.61 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD PF02150 Domain 9 1420 35.70 33 26.19 Changed RNA polymerases M/15 Kd subunit
RNA_pol_N PF01194 Domain 121 984 59.20 55 76.93 Changed RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25 PF08292 Domain 24 624 116.00 34 54.04 Changed RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4 PF06883 Domain 142 576 59.00 41 5.15 Changed RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1 PF04997 Domain 25 30812 296.40 43 28.89 Changed RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 Domain 19 50580 91.20 37 14.58 Changed RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 Domain 112 27483 158.60 28 13.50 Changed RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 Domain 106 25806 90.20 35 7.34 Changed RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 Domain 23 26851 418.40 35 35.09 Changed RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6 PF04992 Domain 147 2444 163.40 39 17.28 Changed RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7 PF04990 Domain 95 1270 123.10 48 9.75 Changed RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R PF05001 Repeat 106 8324 14.10 78 13.65 Changed RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1 PF04563 Family 13 26153 392.30 29 35.08 Changed RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 Domain 22 41704 123.80 25 17.76 Changed RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 Domain 140 37478 64.70 63 7.39 Changed RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 Domain 293 11577 61.10 58 13.41 Changed RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_45 PF10385 Domain 819 24917 66.80 52 6.43 Changed RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_5 PF04567 Domain 164 11340 64.40 49 13.80 Changed RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 Domain 74 36331 356.10 44 40.11 Changed RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 Domain 46 23683 78.50 62 6.51 Changed RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4 PF03874 Family 54 1500 114.20 21 72.41 Changed RNA polymerase Rpb4
RNA_pol_Rpb5_C PF01191 Domain 174 1220 70.90 49 38.30 Changed RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N PF03871 Domain 147 811 91.40 33 40.77 Changed RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6 PF01192 Family 444 19192 55.70 38 60.98 Changed RNA polymerase Rpb6
RNA_pol_Rpb8 PF03870 Family 131 689 131.90 38 89.13 Changed RNA polymerase Rpb8
RNA_pol_RpbG PF16992 Family 8 45 117.00 35 95.11 New DNA-directed RNA polymerase, subunit G
RNA_pol_Rpc34 PF05158 Family 14 829 238.30 25 89.90 Changed RNA polymerase Rpc34 subunit
RNA_pol_Rpc4 PF05132 Family 184 663 131.90 24 31.38 Changed RNA polymerase III RPC4
RNA_pol_Rpc82 PF05645 Family 29 561 236.20 17 42.99 Changed RNA polymerase III subunit RPC82
RNA_pol_Rpo13 PF12136 Domain 7 29 45.40 53 45.08 Changed RNA polymerase Rpo13 subunit HTH domain
RNA_replicase_B PF03431 Family 6 411 258.60 49 82.74 Changed RNA replicase, beta-chain
RNB PF00773 Domain 61 24504 312.80 38 42.35 Changed RNB domain
Rnf-Nqr PF02508 Family 741 16326 189.80 41 91.30 Changed Rnf-Nqr subunit, membrane protein
RNF111_N PF15303 Family 11 188 241.40 48 36.78 Changed E3 ubiquitin-protein ligase Arkadia N-terminus
RNF220 PF15926 Family 9 280 155.80 30 46.16 New E3 ubiquitin-protein ligase RNF220
RnfC_N PF13375 Domain 63 7476 94.40 44 16.54 Changed RnfC Barrel sandwich hybrid domain
RNHCP PF12647 Domain 77 520 85.30 58 65.27 Changed RNHCP domain
Rnk_N PF14760 Domain 103 4554 40.10 64 28.77 Changed Rnk N-terminus
RnlA_toxin PF15935 Domain 9 173 211.50 37 61.89 New RNase LS, bacterial toxin
RnlB_antitoxin PF15933 Family 10 150 94.20 37 76.97 New Antitoxin to bacterial toxin RNase LS or RnlA
RNR_inhib PF08591 Family 43 216 94.40 30 37.96 Changed Ribonucleotide reductase inhibitor
RNR_N PF08343 Family 157 13074 80.00 45 11.44 Changed Ribonucleotide reductase N-terminal
Robl_LC7 PF03259 Domain 38 4889 90.30 34 66.94 Changed Roadblock/LC7 domain
Roc PF08477 Domain 192 1638 111.30 21 12.68 Changed Ras of Complex, Roc, domain of DAPkinase
Rod-binding PF10135 Family 309 6502 49.00 44 19.06 Changed Rod binding protein
Rod_C PF10493 Domain 19 212 435.10 28 27.33 Changed Rough deal protein C-terminal region
Rod_cone_degen PF15201 Family 3 20 48.60 74 81.48 Changed Progressive rod-cone degeneration
ROF PF07073 Family 43 3868 74.80 68 87.98 Changed Modulator of Rho-dependent transcription termination (ROF)
Rogdi_lz PF10259 Family 90 444 265.00 24 83.00 Changed Rogdi leucine zipper containing protein
ROK PF00480 Family 11 64818 282.40 23 85.32 Changed ROK family
ROKNT PF08067 Domain 9 167 41.80 80 10.02 Changed ROKNT (NUC014) domain
RolB_RolC PF02027 Family 41 127 190.00 20 62.96 Changed RolB/RolC glucosidase family
Romo1 PF10247 Family 64 518 64.10 45 56.18 Changed Reactive mitochondrial oxygen species modulator 1
rOmpB PF12334 Family 1 171 200.50 76 15.40 Changed Rickettsia outer membrane protein B
Rootletin PF15035 Family 55 326 173.50 34 10.72 Changed Ciliary rootlet component, centrosome cohesion
Root_cap PF06830 Family 51 354 55.30 53 17.25 Changed Root cap
Rop PF01815 Domain 5 1102 55.40 70 88.59 Changed Rop protein
Rop-like PF05082 Family 60 264 61.80 40 87.09 Changed Rop-like
Rossmann-like PF10727 Domain 5 2957 122.80 52 41.47 Changed Rossmann-like domain
ROS_MUCR PF05443 Family 235 1849 119.40 45 76.29 Changed ROS/MUCR transcriptional regulator protein
Rot1 PF10681 Family 65 246 201.20 43 84.16 Changed Chaperone for protein-folding within the ER, fungal
Rotamase PF00639 Domain 46 17635 95.60 33 31.40 Changed PPIC-type PPIASE domain
Rotamase_2 PF13145 Domain 115 10354 122.80 25 28.18 Changed PPIC-type PPIASE domain
Rotamase_3 PF13616 Domain 20 16398 106.60 35 32.64 Changed PPIC-type PPIASE domain
Rotavirus_VP1 PF12289 Domain 2 1009 299.50 92 29.05 Changed Rotavirus VP1 C-terminal domain
Rotavirus_VP3 PF06929 Family 2 1146 593.10 86 83.11 Changed Rotavirus VP3 protein
Rotavirus_VP7 PF05868 Family 3 191 230.00 64 99.95 Changed Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6 PF00980 Family 2 1950 265.80 77 99.75 Changed Rotavirus major capsid protein VP6
Rota_NS26 PF01525 Family 6 896 188.60 87 99.66 Changed Rotavirus NS26
Rota_NS35 PF02509 Family 2 965 306.80 91 99.63 Changed Rotavirus non-structural protein 35
Rota_NS53 PF00981 Family 14 1143 468.00 72 99.40 Changed Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6 PF04866 Family 1 378 91.30 88 99.25 Changed Rotavirus non-structural protein 6
Rota_NSP3 PF01665 Family 2 913 278.50 86 91.16 Changed Rotavirus non-structural protein NSP3
Rota_NSP4 PF01452 Family 1 2071 168.20 81 98.40 Changed Rotavirus non structural protein
Rota_VP2 PF05087 Family 2 1022 769.10 90 99.95 Changed Rotavirus VP2 protein
Roughex PF06020 Family 2 56 309.20 65 96.30 Changed Drosophila roughex protein
Rox3 PF08633 Family 63 222 195.40 33 59.06 Changed Rox3 mediator complex subunit
RP-C PF03428 Domain 55 966 163.20 46 43.88 Changed Replication protein C N-terminal domain
RP-C_C PF11800 Family 52 941 192.20 34 51.71 Changed Replication protein C C-terminal region
RP1-2 PF12042 Domain 17 337 153.60 32 64.39 Changed Tubuliform egg casing silk strands structural domain
RPA PF10134 Family 22 969 224.90 40 66.58 Changed Replication initiator protein A
RPAP1_C PF08620 Family 119 526 71.00 42 7.65 Changed RPAP1-like, C-terminal
RPAP1_N PF08621 Family 138 481 45.40 36 5.20 Changed RPAP1-like, N-terminal
RPAP2_Rtr1 PF04181 Family 140 993 66.40 33 23.78 Changed Rtr1/RPAP2 family
RPAP3_C PF13877 Domain 162 557 91.60 23 18.10 Changed Potential Monad-binding region of RPAP3
RPA_C PF08784 Domain 15 637 100.10 20 36.30 Changed Replication protein A C terminal
RPA_interact_C PF14768 Family 82 220 81.10 31 34.12 Changed Replication protein A interacting C-terminal
RPA_interact_M PF14767 Family 27 147 74.90 33 34.86 Changed Replication protein A interacting middle
RPA_interact_N PF14766 Family 41 188 39.10 40 16.18 Changed Replication protein A interacting N-terminal
RPE65 PF03055 Family 585 6987 437.30 33 91.16 Changed Retinal pigment epithelial membrane protein
RPEL PF02755 Family 149 2608 23.70 44 9.75 Changed RPEL repeat
RPM2 PF08579 Family 6 76 120.50 34 10.12 Changed Mitochondrial ribonuclease P subunit (RPM2)
RPN13_C PF16550 Domain 59 529 117.20 27 32.88 New UCH-binding domain
Rpn3_C PF08375 Family 74 679 65.40 50 12.79 Changed Proteasome regulatory subunit C-terminal
RPN7 PF10602 Family 59 1316 170.80 30 39.89 Changed 26S proteasome subunit RPN7
rpo132 PF12415 Family 8 96 31.90 71 2.80 Changed Poxvirus DNA dependent RNA polymerase
rpo30_N PF12410 Family 9 127 132.80 70 60.03 Changed Poxvirus DNA dependent RNA polymerase 30kDa subunit
RPOL_N PF14700 Domain 194 937 282.20 19 27.73 Changed DNA-directed RNA polymerase N-terminal
Rpp20 PF12328 Family 44 290 129.80 29 70.28 Changed Rpp20 subunit of nuclear RNase MRP and P
Rpr2 PF04032 Family 292 975 96.30 23 51.28 Changed RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPS31 PF17067 Family 1 151 72.20 44 77.34 New Ribosomal protein S31e
RPT PF13446 Domain 177 777 58.10 22 13.60 Changed A repeated domain in UCH-protein
RPW8 PF05659 Family 15 295 127.00 25 25.99 Changed Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC PF09382 Domain 121 13888 112.80 35 17.31 Changed RQC domain
RraB PF06877 Domain 105 6480 102.00 44 65.20 Changed Regulator of ribonuclease activity B
RRF PF01765 Domain 997 19694 162.90 51 87.20 Changed Ribosome recycling factor
Rrf2 PF02082 Family 112 33968 81.10 31 53.96 Changed Transcriptional regulator
RRF_GI PF12614 Family 14 306 123.80 62 95.39 Changed Ribosome recycling factor
RRG8 PF17068 Family 5 44 255.70 38 95.60 New Required for respiratory growth protein 8 mitochondrial
RRM PF10378 Domain 14 205 59.90 41 6.86 Changed Putative RRM domain
RRM_1 PF00076 Domain 72 97323 67.70 24 23.75 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2 PF04059 Family 4 785 92.70 47 15.80 Changed RNA recognition motif 2
RRM_3 PF08777 Domain 12 498 101.60 27 22.95 Changed RNA binding motif
RRM_4 PF10598 Domain 41 667 90.50 70 4.02 Changed RNA recognition motif of the spliceosomal PrP8
RRM_5 PF13893 Domain 98 6100 56.10 21 11.96 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_6 PF14259 Domain 73 9959 68.70 19 14.97 Changed RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
RRM_7 PF16367 Domain 17 676 89.70 54 16.46 New RNA recognition motif
RRM_DME PF15628 Family 19 188 92.90 61 7.00 Changed RRM in Demeter
RRM_occluded PF16842 Domain 49 223 79.30 39 7.90 New Occluded RNA-recognition motif
RRM_u2 PF16651 Disordered 61 287 217.10 18 26.03 New Unstructured region on RNA-binding-domain protein
RRN3 PF05327 Family 110 717 448.60 23 78.51 Changed RNA polymerase I specific transcription initiation factor RRN3
Rrn6 PF10214 Family 54 278 635.00 17 78.03 Changed RNA polymerase I-specific transcription-initiation factor
RRN7 PF11781 Domain 24 316 33.90 32 6.27 Changed RNA polymerase I-specific transcription initiation factor Rrn7
RRN9 PF10680 Domain 50 178 72.20 35 12.74 Changed RNA polymerase I specific transcription initiation factor
RrnaAD PF00398 Domain 11 27404 245.20 33 90.41 Changed Ribosomal RNA adenine dimethylase
rRNA_methylase PF06962 Family 220 7466 137.80 61 73.64 Changed Putative rRNA methylase
rRNA_proc-arch PF13234 Domain 300 1626 239.90 19 23.29 Changed rRNA-processing arch domain
rRNA_processing PF08524 Domain 29 381 142.60 21 73.34 Changed rRNA processing
RRP14 PF15459 Family 56 336 55.80 43 11.76 Changed 60S ribosome biogenesis protein Rrp14
Rrp15p PF07890 Family 156 588 139.30 29 51.22 Changed Rrp15p
RRP7 PF12923 Family 155 612 128.70 30 43.24 Changed Ribosomal RNA-processing protein 7 (RRP7)
RRS1 PF04939 Family 160 665 160.20 37 58.36 Changed Ribosome biogenesis regulatory protein (RRS1)
RRT14 PF17075 Family 12 60 191.50 38 95.01 New Regular of rDNA transcription protein 14
RRXRR PF14239 Family 59 629 156.50 39 43.71 Changed RRXRR protein
RR_TM4-6 PF06459 Family 60 434 243.20 33 6.16 Changed Ryanodine Receptor TM 4-6
RS4NT PF08071 Domain 58 1327 35.20 60 13.79 Changed RS4NT (NUC023) domain
Rsa3 PF14615 Family 68 216 45.90 37 24.71 Changed Ribosome-assembly protein 3
RsbRD_N PF14361 Family 126 645 102.50 19 31.15 Changed RsbT co-antagonist protein rsbRD N-terminal domain
Rsbr_N PF08678 Domain 14 199 129.10 39 47.12 Changed Rsbr N terminal
RsbU_N PF08673 Domain 29 4475 75.00 88 22.20 Changed Phosphoserine phosphatase RsbU, N-terminal domain
RSB_motif PF16294 Motif 31 383 95.10 32 12.73 New RNSP1-SAP18 binding (RSB) motif
Rsc14 PF08586 Family 14 41 99.50 59 52.66 Changed RSC complex, Rsc14/Ldb7 subunit
RSD-2 PF07547 Domain 17 27 83.70 30 13.73 Changed RSD-2 N-terminal domain
RsdA_SigD_bd PF16751 Domain 21 1827 46.10 86 15.14 New Anti-sigma-D factor RsdA to sigma factor binding region
Rsd_AlgQ PF04353 Family 64 4056 148.10 69 92.92 Changed Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C PF03873 Domain 51 4158 54.70 66 25.87 Changed Anti sigma-E protein RseA, C-terminal domain
RseA_N PF03872 Domain 45 4704 89.30 58 42.41 Changed Anti sigma-E protein RseA, N-terminal domain
RseC_MucC PF04246 Family 203 5096 132.00 45 85.72 Changed Positive regulator of sigma(E), RseC/MucC
RSF PF14876 Family 2 35 335.30 76 85.43 Changed Respiratory growth transcriptional regulator
RsfS PF02410 Family 999 18945 96.40 41 75.79 Changed Ribosomal silencing factor during starvation
RsgA_N PF16745 Domain 64 7931 54.30 58 18.57 New RsgA N-terminal domain
RsgI_N PF12791 Family 49 534 53.60 29 13.20 Changed Anti-sigma factor N-terminus
RskA PF10099 Family 242 3259 197.80 38 80.09 Changed Anti-sigma-K factor rskA
Rsm1 PF08600 Domain 10 352 92.50 24 20.23 Changed Rsm1-like
Rsm22 PF09243 Family 6 1487 231.40 23 56.79 Changed Mitochondrial small ribosomal subunit Rsm22
RsmF_methylt_CI PF17126 Domain 122 2264 62.70 49 14.13 New RsmF rRNA methyltransferase first C-terminal domain
RsmJ PF04378 Domain 7 6513 244.00 53 87.68 Changed Ribosomal RNA large subunit methyltransferase D, RlmJ
RSN1_7TM PF02714 Family 81 2898 297.20 22 35.55 Changed Calcium-dependent channel, 7TM region, putative phosphate
RSN1_TM PF13967 Family 146 2429 153.90 22 17.51 Changed Late exocytosis, associated with Golgi transport
RSRP PF17069 Family 3 143 252.60 43 23.87 New Arginine/Serine-Rich protein 1
RSS_P20 PF11757 Family 3 239 143.30 85 80.65 Changed Suppressor of RNA silencing P21-like
RST PF12174 Domain 59 307 65.70 32 11.54 Changed RCD1-SRO-TAF4 (RST) plant domain
RSV_NS2 PF03113 Family 1 114 123.70 92 100.00 Changed Respiratory synctial virus non-structural protein NS2
RTA1 PF04479 Family 265 3035 208.00 27 66.92 Changed RTA1 like protein
RTBV_P12 PF06361 Family 1 13 101.80 91 100.00 Changed Rice tungro bacilliform virus P12 protein
RTBV_P46 PF06216 Family 1 14 388.50 77 100.00 Changed Rice tungro bacilliform virus P46 protein
RTC PF01137 Domain 180 4336 305.60 48 90.55 Changed RNA 3'-terminal phosphate cyclase
RTC4 PF14474 Domain 107 326 116.70 26 25.22 Changed RTC4-like domain
RtcB PF01139 Family 288 14165 295.90 33 96.28 Changed tRNA-splicing ligase RtcB
RtcR PF06956 Family 42 2958 182.40 79 34.82 Changed Regulator of RNA terminal phosphate cyclase
RTC_insert PF05189 Domain 279 3730 102.00 43 30.04 Changed RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC PF09357 Family 57 935 154.40 27 72.45 Changed RteC protein
Rtf2 PF04641 Family 19 953 220.50 22 71.81 Changed Rtf2 RING-finger
RTP PF02334 Domain 1 116 120.50 66 98.97 Changed Replication terminator protein
RTP1_C1 PF10363 Family 142 442 114.00 28 11.99 Changed Required for nuclear transport of RNA pol II C-terminus 1
RTP1_C2 PF10304 Family 70 311 33.10 33 3.54 Changed Required for nuclear transport of RNA pol II C-terminus 2
RTP801_C PF07809 Family 45 221 114.80 44 53.34 Changed RTP801 C-terminal region
Rtt102p PF09510 Family 10 49 130.30 43 65.33 Changed Rtt102p-like transcription regulator protein
Rtt106 PF08512 Domain 235 1656 90.30 26 12.40 Changed Histone chaperone Rttp106-like
RTT107_BRCT_5 PF16770 Domain 41 329 104.90 28 11.69 New Regulator of Ty1 transposition protein 107 BRCT domain
RTT107_BRCT_6 PF16771 Domain 23 61 110.40 37 11.38 New Regulator of Ty1 transposition protein 107 BRCT domain
RTTN_N PF14726 Family 40 112 95.20 44 5.33 Changed Rotatin, an armadillo repeat protein, centriole functioning
RTX PF02382 Family 4 1098 562.90 62 60.70 Changed RTX N-terminal domain
RtxA PF07634 Repeat 101 7035 17.50 37 16.75 Changed RtxA repeat
RTX_C PF08339 Family 4 853 145.20 56 15.07 Changed RTX C-terminal domain
Rubella_Capsid PF05750 Family 1 117 213.60 97 33.86 Changed Rubella capsid protein
Rubella_E1 PF05748 Family 1 1330 287.00 94 90.71 Changed Rubella membrane glycoprotein E1
Rubella_E2 PF05749 Family 1 89 232.50 97 27.22 Changed Rubella membrane glycoprotein E2
Rubis-subs-bind PF09273 Domain 159 1231 127.50 17 25.71 Changed Rubisco LSMT substrate-binding
RuBisCO_large PF00016 Domain 21 81136 207.20 75 63.60 Changed Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N PF02788 Domain 42 70352 115.30 85 33.42 Changed Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small PF00101 Domain 94 2557 81.90 39 65.43 Changed Ribulose bisphosphate carboxylase, small chain
Rubi_NSP_C PF12601 Family 1 74 55.80 99 3.76 Changed Rubivirus non-structural protein
Rubredoxin PF00301 Domain 26 12930 46.80 52 22.08 Changed Rubredoxin
Rubrerythrin PF02915 Domain 38 8196 111.50 25 58.21 Changed Rubrerythrin
RUN PF02759 Family 40 2555 138.00 20 18.04 Changed RUN domain
Runt PF00853 Domain 27 640 116.50 76 30.50 Changed Runt domain
RunxI PF08504 Family 10 319 92.60 67 22.31 Changed Runx inhibition domain
RusA PF05866 Family 94 13405 109.90 34 87.05 Changed Endodeoxyribonuclease RusA
RuvA_C PF07499 Domain 92 18303 46.30 35 23.19 Changed RuvA, C-terminal domain
RuvA_N PF01330 Domain 947 18665 61.20 42 30.63 Changed RuvA N terminal domain
RuvB_C PF05491 Family 556 18794 74.90 58 22.26 Changed Holliday junction DNA helicase ruvB C-terminus
RuvB_N PF05496 Family 94 22212 218.60 52 62.73 Changed Holliday junction DNA helicase ruvB N-terminus
RuvC PF02075 Domain 5 11917 147.20 48 83.63 Changed Crossover junction endodeoxyribonuclease RuvC
RuvX PF03652 Family 136 18825 134.20 39 92.44 Changed Holliday junction resolvase
rve PF00665 Domain 95 133725 110.70 23 27.51 Changed Integrase core domain
rve_2 PF13333 Family 14 7407 51.90 37 59.51 Changed Integrase core domain
rve_3 PF13683 Domain 66 16380 61.90 30 45.78 Changed Integrase core domain
RVP PF00077 Domain 9 168023 93.40 86 25.98 Changed Retroviral aspartyl protease
RVP_2 PF08284 Domain 5 1416 113.80 31 10.94 Changed Retroviral aspartyl protease
RVT_1 PF00078 Family 69 244283 165.80 62 39.48 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 Family 32 8526 138.60 26 24.02 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 Domain 51 11917 85.40 35 24.09 Changed Reverse transcriptase-like
RVT_connect PF06815 Domain 2 30703 88.60 84 13.05 Changed Reverse transcriptase connection domain
RVT_N PF13655 Domain 117 1771 78.40 45 16.86 Changed N-terminal domain of reverse transcriptase
RVT_thumb PF06817 Domain 22 86979 61.30 89 12.36 Changed Reverse transcriptase thumb domain
RWD PF05773 Domain 118 3457 118.70 19 18.91 Changed RWD domain
RWP-RK PF02042 Family 110 1222 48.20 41 10.71 Changed RWP-RK domain
RXLR PF16810 Family 8 164 109.80 22 74.19 New RXLR phytopathogen effector protein, Avirulence activity
RXT2_N PF08595 Family 65 234 136.00 35 29.93 Changed RXT2-like, N-terminal
Rxt3 PF08642 Family 83 331 110.50 36 13.73 Changed Histone deacetylation protein Rxt3
RYDR_ITPR PF01365 Family 74 1847 189.50 27 10.84 Changed RIH domain
RyR PF02026 Family 137 1882 87.50 35 8.28 Changed RyR domain
Rz1 PF06085 Family 7 173 40.90 55 57.82 Changed Lipoprotein Rz1 precursor
R_equi_Vir PF05526 Family 8 88 156.60 49 97.85 Changed Rhodococcus equi virulence-associated protein
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