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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
R-HINP1I PF11463 Family 4 7 188.00 39 78.99 Changed R.HinP1I restriction endonuclease
R3H PF01424 Domain 801 2771 60.60 23 10.29 Changed R3H domain
R3H-assoc PF13902 Domain 54 261 125.00 23 38.23 Changed R3H-associated N-terminal domain
RA PF00788 Domain 40 3826 90.70 18 10.72 Changed Ras association (RalGDS/AF-6) domain
Rab15_effector PF15208 Family 10 35 233.80 60 98.31 Changed Rab15 effector
Rab3-GTPase_cat PF13890 Family 50 280 149.50 44 18.52 Changed Rab3 GTPase-activating protein catalytic subunit
RAB3GAP2_C PF14656 Family 28 178 419.70 30 42.51 Changed Rab3 GTPase-activating protein regulatory subunit C-terminus
RAB3GAP2_N PF14655 Family 42 255 323.00 29 34.80 Changed Rab3 GTPase-activating protein regulatory subunit N-terminus
Rab5-bind PF09311 Family 5 254 209.20 33 43.95 Changed Rabaptin-like protein
Rab5ip PF07019 Family 181 537 82.30 29 59.98 Changed Rab5-interacting protein (Rab5ip)
Rabaptin PF03528 Family 3 198 241.00 39 44.24 Changed Rabaptin
RabGAP-TBC PF00566 Family 72 8942 195.20 20 29.61 Changed Rab-GTPase-TBC domain
RabGGT_insert PF07711 Domain 13 62 98.00 52 18.69 Changed Rab geranylgeranyl transferase alpha-subunit, insert domain
Rab_bind PF16704 Domain 4 106 63.20 61 4.60 Changed Rab binding domain
Rab_eff_C PF04698 Domain 8 188 360.40 37 57.95 Changed Rab effector MyRIP/melanophilin C-terminus
Rac1 PF09632 Domain 1 1 297.00 100 40.57 Changed Rac1-binding domain
RAC_head PF16717 Domain 80 297 94.00 34 18.43 Changed Ribosome-associated complex head domain
Rad1 PF02144 Family 24 417 247.30 27 76.69 Changed Repair protein Rad1/Rec1/Rad17
Rad10 PF03834 Family 128 426 110.20 45 35.19 Changed Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Rad17 PF03215 Family 3 523 335.40 21 58.60 Changed Rad17 cell cycle checkpoint protein
Rad21_Rec8 PF04824 Family 15 692 52.40 30 8.21 Changed Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 Family 122 863 106.60 35 16.71 Changed N terminus of Rad21 / Rec8 like protein
Rad33 PF08730 Family 12 41 107.00 26 52.19 Changed Rad33
Rad4 PF03835 Domain 30 693 139.40 23 17.60 Changed Rad4 transglutaminase-like domain
Rad50_zn_hook PF04423 Motif 57 244 51.30 25 4.66 Changed Rad50 zinc hook motif
Rad51 PF08423 Domain 22 2159 226.90 27 69.25 Changed Rad51
RAD51_interact PF15696 Family 23 96 38.70 54 7.31 Changed RAD51 interacting motif
Rad52_Rad22 PF04098 Family 34 495 139.70 34 37.27 Changed Rad52/22 family double-strand break repair protein
Rad54_N PF08658 Family 86 204 170.60 35 20.52 Changed Rad54 N terminal
Rad60-SLD PF11976 Family 33 1309 69.70 33 34.20 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD_2 PF13881 Domain 22 476 106.50 28 60.53 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad9 PF04139 Family 12 507 235.80 24 58.42 Changed Rad9
Rad9_Rad53_bind PF08605 Family 8 87 136.10 26 10.77 Changed Fungal Rad9-like Rad53-binding
RadC PF04002 Family 1000 1618 118.60 35 52.11 Changed RadC-like JAB domain
Radial_spoke PF04712 Family 45 409 288.80 21 75.38 Changed Radial spokehead-like protein
Radial_spoke_3 PF06098 Family 52 195 258.80 38 59.72 Changed Radial spoke protein 3
Radical_SAM PF04055 Domain 518 29812 169.50 14 42.06 Changed Radical SAM superfamily
Radical_SAM_C PF16199 Family 627 1398 83.70 31 19.95 Changed Radical_SAM C-terminal domain
Radical_SAM_N PF08497 Family 320 552 311.30 49 47.32 Changed Radical SAM N-terminal
Raffinose_syn PF05691 Family 4 638 418.70 28 73.01 Changed Raffinose synthase or seed imbibition protein Sip1
Raftlin PF15250 Family 19 192 307.00 35 84.69 Changed Raftlin
RAG1 PF12940 Family 2 66 591.80 74 63.22 Changed Recombination-activation protein 1 (RAG1), recombinase
RAG1_imp_bd PF12560 Family 18 66 248.00 44 27.27 Changed RAG1 importin binding
RAG2 PF03089 Family 11 60 314.40 69 61.93 Changed Recombination activating protein 2
RAG2_PHD PF13341 Domain 8 54 77.90 78 14.83 Changed RAG2 PHD domain
RAI1 PF08652 Family 131 417 73.50 36 18.72 Changed RAI1 like PD-(D/E)XK nuclease
RAI16-like PF10257 Family 20 568 340.40 30 41.35 Changed Retinoic acid induced 16-like protein
Ral PF11058 Family 2 2 65.00 75 100.00 Changed Antirestriction protein Ral
RALF PF05498 Family 64 526 60.80 37 55.41 Changed Rapid ALkalinization Factor (RALF)
RAM PF15320 Family 32 98 81.10 39 50.96 Changed mRNA cap methylation, RNMT-activating mini protein
RAMP PF04901 Family 58 214 104.80 38 67.62 Changed Receptor activity modifying family
RAMP4 PF06624 Family 67 415 58.60 38 66.63 Changed Ribosome associated membrane protein RAMP4
RAMPs PF03787 Family 152 970 236.50 14 66.92 Changed RAMP superfamily
Ran-binding PF05508 Family 81 162 308.70 41 55.87 Changed RanGTP-binding protein
RanGAP1_C PF07834 Domain 14 103 179.20 43 32.24 Changed RanGAP1 C-terminal domain
Ran_BP1 PF00638 Family 8 1868 115.60 30 22.99 Changed RanBP1 domain
RAP PF08373 Domain 70 798 58.90 26 8.60 Changed RAP domain
RAP-1 PF03085 Family 6 18 232.30 23 68.73 Changed Rhoptry-associated protein 1 (RAP-1)
RAP1 PF07218 Family 2 8 552.40 37 96.13 Changed Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind PF09197 Domain 15 42 110.50 37 16.28 Changed Rap1, DNA-binding
Rap1_C PF11626 Family 78 199 86.20 29 14.59 Changed TRF2-interacting telomeric protein/Rap1 - C terminal domain
Rapamycin_bind PF08771 Domain 103 482 98.20 54 4.35 Changed Rapamycin binding domain
RapA_C PF12137 Domain 86 180 351.80 38 37.42 Changed RNA polymerase recycling family C-terminal
Rapsyn_N PF10579 Family 3 112 78.50 46 17.33 Changed Rapsyn N-terminal myristoylation and linker region
Raptor_N PF14538 Domain 67 447 146.40 56 11.12 Changed Raptor N-terminal CASPase like domain
Rap_GAP PF02145 Family 261 1437 179.40 35 14.34 Changed Rap/ran-GAP
Ras PF00071 Domain 60 25031 153.60 29 60.06 Changed Ras family
RasGAP PF00616 Family 51 2757 135.30 21 13.50 Changed GTPase-activator protein for Ras-like GTPase
RasGAP_C PF03836 Family 128 613 130.50 32 9.93 Changed RasGAP C-terminus
RasGEF PF00617 Family 734 4117 183.40 24 19.13 Changed RasGEF domain
RasGEF_N PF00618 Domain 54 2758 107.10 21 10.19 Changed RasGEF N-terminal motif
RasGEF_N_2 PF14663 Domain 84 344 107.40 39 7.68 Changed Rapamycin-insensitive companion of mTOR RasGEF_N domain
Ras_bdg_2 PF14847 Domain 49 180 105.00 35 11.51 Changed Ras-binding domain of Byr2
Rav1p_C PF12234 Family 68 671 443.90 22 27.33 Changed RAVE protein 1 C terminal
RAWUL PF16207 Domain 64 616 71.80 34 17.41 Changed RAWUL domain RING finger- and WD40-associated ubiquitin-like
Rax2 PF12768 Family 75 216 255.10 27 23.06 Changed Cortical protein marker for cell polarity
RBB1NT PF08169 Domain 38 194 94.40 48 7.67 Changed RBB1NT (NUC162) domain
RbcS PF12338 Family 10 130 37.80 57 21.91 Changed Ribulose-1,5-bisphosphate carboxylase small subunit
RBD PF02196 Domain 80 787 69.00 28 8.93 Changed Raf-like Ras-binding domain
RBD-FIP PF09457 Motif 10 515 44.10 41 6.55 Changed FIP domain
RBDV_coat PF06593 Family 1 1 274.00 100 100.00 Changed Raspberry bushy dwarf virus coat protein
RBFA PF02033 Family 906 1778 104.80 30 70.94 Changed Ribosome-binding factor A
RBM1CTR PF08081 Family 12 122 45.10 70 11.79 Changed RBM1CTR (NUC064) family
RBM39linker PF15519 Domain 100 471 85.20 33 16.24 Changed linker between RRM2 and RRM3 domains in RBM39 protein
RbpA PF13397 Family 58 266 101.80 47 87.28 Changed RNA polymerase-binding protein
RBP_receptor PF14752 Family 34 239 372.50 24 70.31 Changed Retinol binding protein receptor
RbsD_FucU PF05025 Family 310 567 133.60 31 96.12 Changed RbsD / FucU transport protein family
Rbsn PF11464 Domain 109 364 41.90 38 8.19 Changed Rabenosyn Rab binding domain
RB_A PF01858 Domain 77 404 190.20 37 20.44 Changed Retinoblastoma-associated protein A domain
RB_B PF01857 Domain 94 399 142.10 39 15.18 Changed Retinoblastoma-associated protein B domain
Rb_C PF08934 Domain 7 156 124.30 42 13.18 Changed Rb C-terminal domain
RC-P840_PscD PF10657 Family 6 8 141.60 60 100.00 Changed Photosystem P840 reaction centre protein PscD
RcbX PF02341 Family 31 174 104.90 36 59.70 Changed RbcX protein
RCC1 PF00415 Repeat 101 19189 51.80 29 21.34 Changed Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 Repeat 190 2990 29.90 33 5.13 Changed Regulator of chromosome condensation (RCC1) repeat
RCC_reductase PF06405 Family 16 78 215.50 44 81.29 Changed Red chlorophyll catabolite reductase (RCC reductase)
Rcd1 PF04078 Family 64 621 228.50 57 73.80 Changed Cell differentiation family, Rcd1-like
RcnB PF11776 Family 91 207 49.30 31 32.34 Changed Nickel/cobalt transporter regulator
RcpB PF16971 Family 4 4 166.00 36 100.00 Changed Rough colony protein B, tight adherence - tad - subunit
RcpC PF16976 Family 157 478 111.10 25 39.63 Changed Flp pilus assembly protein RcpC/CpaB
RCR PF12273 Family 52 249 130.40 23 69.54 Changed Chitin synthesis regulation, resistance to Congo red
RcsC PF09456 Domain 24 43 91.10 35 9.78 Changed RcsC Alpha-Beta-Loop (ABL)
RCSD PF05177 Family 8 57 85.50 39 11.03 Changed RCSD region
RcsD_ABL PF16359 Domain 20 43 103.10 43 11.63 Changed RcsD-ABL domain
RcsF PF16358 Family 17 63 105.40 41 76.93 Changed RcsF lipoprotein
RD3 PF14473 Family 35 120 127.70 41 64.37 Changed RD3 protein
RDD PF06271 Family 63 1975 136.40 18 56.71 Changed RDD family
RdgC PF04381 Family 130 333 276.10 32 93.33 Changed Putative exonuclease, RdgC
RDM PF11002 Domain 23 85 42.00 64 13.51 Changed RFPL defining motif (RDM)
RdRP PF05183 Family 305 1061 469.90 24 47.16 Changed RNA dependent RNA polymerase
RdRP_1 PF00680 Family 12 65 429.60 18 17.02 Changed RNA dependent RNA polymerase
RdRP_2 PF00978 Family 36 51 372.40 18 21.34 Changed RNA dependent RNA polymerase
RdRP_3 PF00998 Family 33 19 434.10 26 36.31 Changed Viral RNA dependent RNA polymerase
RdRP_4 PF02123 Family 28 19 409.60 15 39.94 Changed Viral RNA-directed RNA-polymerase
RdRP_5 PF07925 Family 3 4 965.50 40 98.22 Changed Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3 PF09231 Domain 2 2 964.00 42 94.51 Changed Rice dwarf virus p3
Rdx PF10262 Family 275 796 93.10 27 54.92 Changed Rdx family
Read-through PF16814 Domain 1 1 182.00 100 55.32 Changed Read-through domain
RebB PF11747 Family 33 135 66.00 40 64.91 Changed Killing trait
REC114-like PF15165 Family 13 81 172.50 40 87.02 Changed Meiotic recombination protein REC114-like
RecA PF00154 Family 16 1866 251.40 63 71.21 Changed recA bacterial DNA recombination protein
RecA_dep_nuc PF16786 Domain 4 11 94.60 30 70.62 Changed Recombination enhancement, RecA-dependent nuclease
Receptor_2B4 PF11465 Domain 3 77 97.80 30 31.96 Changed Natural killer cell receptor 2B4
Receptor_IA-2 PF11548 Family 28 137 84.10 44 9.36 Changed Protein-tyrosine phosphatase receptor IA-2
Recep_L_domain PF01030 Domain 53 2061 112.80 25 21.65 Changed Receptor L domain
RecG_N PF17190 Domain 8 9 86.10 28 11.03 New RecG N-terminal helical domain
RecG_wedge PF17191 Domain 8 1262 162.40 24 23.13 New RecG wedge domain
Recombinase PF07508 Family 67 2173 106.10 23 21.43 Changed Recombinase
RecO_C PF02565 Family 104 1450 148.40 17 59.92 Changed Recombination protein O C terminal
RecO_N PF11967 Domain 104 1460 78.70 24 31.74 Changed Recombination protein O N terminal
RecO_N_2 PF13114 Domain 15 25 71.10 46 34.23 Changed RecO N terminal
RecQ5 PF06959 Family 13 63 177.10 42 19.30 Changed RecQ helicase protein-like 5 (RecQ5)
RecQ_Zn_bind PF16124 Domain 847 2605 67.10 27 8.67 Changed RecQ zinc-binding
RecR PF02132 Family 932 1515 39.80 34 19.77 Changed RecR protein
RecT PF03837 Family 73 225 192.40 17 64.39 Changed RecT family
RecU PF03838 Domain 208 348 158.70 38 85.19 Changed Recombination protein U
RecX PF02631 Family 104 1430 122.60 20 65.28 Changed RecX family
Red1 PF07964 Family 10 27 491.70 18 79.06 Changed Rec10 / Red1
Redoxin PF08534 Domain 54 2922 145.30 20 71.17 Changed Redoxin
Reductase_C PF14759 Domain 80 870 81.40 25 18.22 Changed Reductase C-terminal
RED_C PF07807 Family 18 183 107.20 57 19.33 Changed RED-like protein C-terminal region
RED_N PF07808 Family 31 385 182.40 29 35.52 Changed RED-like protein N-terminal region
Reeler PF02014 Family 164 616 122.50 23 18.40 Changed Reeler domain
REF PF05755 Family 30 109 186.20 42 79.77 Changed Rubber elongation factor protein (REF)
REGB_T4 PF10715 Domain 1 1 150.00 100 98.04 Changed Endoribonuclease RegB T4-bacteriophage encoded
Regulator_TrmB PF11495 Family 25 219 172.40 16 56.20 Changed Archaeal transcriptional regulator TrmB
Reg_prop PF07494 Repeat 659 4044 23.90 33 6.37 Changed Two component regulator propeller
REJ PF02010 Family 23 642 351.20 15 17.78 Changed REJ domain
Relaxase PF03432 Family 17 832 227.10 15 51.37 Changed Relaxase/Mobilisation nuclease domain
RelA_SpoT PF04607 Family 95 3195 116.60 38 19.64 Changed Region found in RelA / SpoT proteins
RelB PF04221 Domain 6 666 79.60 22 84.15 Changed RelB antitoxin
RelB_leu_zip PF16180 Domain 6 38 79.20 69 15.52 Changed RelB leucine zipper
RelB_transactiv PF16181 Domain 3 47 161.50 78 31.10 Changed RelB transactivation domain
RelE PF06296 Family 22 215 104.40 25 90.89 Changed RelE toxin of RelE / RelB toxin-antitoxin system
RELT PF12606 Family 32 184 43.90 49 15.48 Changed Tumour necrosis factor receptor superfamily member 19
Remorin_C PF03763 Family 126 703 101.80 33 30.81 Changed Remorin, C-terminal region
Remorin_N PF03766 Family 24 115 55.90 44 29.49 Changed Remorin, N-terminal region
Renin_r PF07850 Family 33 144 99.30 43 27.61 Changed Renin receptor-like protein
Reoviridae_Vp9 PF08978 Domain 2 1 280.00 100 98.94 Changed Reoviridae VP9
Reovirus_cap PF00979 Family 5 1 365.00 100 100.00 Changed Reovirus outer capsid protein, Sigma 3
Reovirus_L2 PF06016 Family 3 3 1294.30 40 99.92 Changed Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2 PF05993 Family 3 3 655.70 41 98.06 Changed Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2 PF07781 Family 3 3 730.00 35 99.91 Changed Reovirus minor core protein Mu-2
Reo_P9 PF06043 Family 1 1 334.00 100 99.70 Changed Reovirus P9-like family
Reo_sigma1 PF01664 Family 3 1 219.00 100 46.60 Changed Reovirus viral attachment protein sigma 1
Reo_sigmaC PF04582 Family 4 2 133.50 14 20.63 Changed Reovirus sigma C capsid protein
Rep-A_N PF04057 Domain 11 554 97.30 27 16.46 Changed Replication factor-A protein 1, N-terminal domain
RepA1_leader PF08048 Family 5 3 24.30 61 100.00 Changed Tap RepA1 leader peptide
RepA_C PF04796 Family 3 81 155.50 30 49.50 Changed Plasmid encoded RepA protein
RepA_N PF06970 Family 21 175 75.00 37 29.67 Changed Replication initiator protein A (RepA) N-terminus
REPA_OB_2 PF16900 Domain 117 819 97.70 29 16.70 Changed Replication protein A OB domain
RepB PF07506 Family 15 162 168.40 19 54.01 Changed RepB plasmid partitioning protein
RepB-RCR_reg PF10723 Domain 3 15 73.70 28 81.44 Changed Replication regulatory protein RepB
RepB_primase PF16793 Domain 13 34 198.40 16 35.07 Changed RepB DNA-primase from phage plasmid
RepC PF06504 Family 5 10 264.50 38 90.30 Changed Replication protein C (RepC)
RepL PF05732 Family 4 43 106.30 19 65.01 Changed Firmicute plasmid replication protein (RepL)
Replicase PF03090 Family 20 40 133.80 28 35.27 Changed Replicase family
Replic_Relax PF13814 Family 33 147 183.30 17 61.75 Changed Replication-relaxation
Repressor_Mnt PF11423 Family 2 3 28.00 63 33.47 Changed Regulatory protein Mnt
Reprolysin PF01421 Domain 19 3179 189.80 28 21.32 Changed Reprolysin (M12B) family zinc metalloprotease
Reprolysin_2 PF13574 Domain 6 256 194.30 38 26.41 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_3 PF13582 Domain 28 157 127.90 20 19.05 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_4 PF13583 Domain 4 130 180.60 20 19.75 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_5 PF13688 Family 47 528 204.70 21 26.13 Changed Metallo-peptidase family M12
Rep_1 PF01446 Family 1 32 173.70 26 69.50 Changed Replication protein
Rep_2 PF01719 Family 12 38 182.40 21 62.07 Changed Plasmid replication protein
Rep_3 PF01051 Family 164 374 220.70 17 62.26 Changed Initiator Replication protein
Rep_4 PF05797 Family 2 4 303.20 61 87.14 Changed Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3 PF08661 Domain 20 405 105.20 23 82.05 Changed Replication factor A protein 3
Rep_fac-A_C PF08646 Family 29 1169 136.80 23 24.90 Changed Replication factor-A C terminal domain
Rep_fac_C PF08542 Domain 363 1486 86.80 22 24.32 Changed Replication factor C C-terminal domain
Rep_N PF08724 Domain 9 6 176.00 31 30.17 Changed Rep protein catalytic domain like
Rep_Org_C PF06926 Family 3 3 94.00 48 37.30 Changed Putative replisome organiser protein C-terminus
Rep_trans PF02486 Family 45 156 189.50 23 51.40 Changed Replication initiation factor
Requiem_N PF14051 Family 32 306 70.00 68 17.73 Changed N-terminal domain of DPF2/REQ.
Rer1 PF03248 Family 131 558 154.70 51 80.80 Changed Rer1 family
RES PF08808 Domain 181 596 157.80 17 70.01 Changed RES domain
ResB PF05140 Family 215 984 281.50 16 61.75 Changed ResB-like family
ResIII PF04851 Family 52 8231 166.30 17 20.04 Changed Type III restriction enzyme, res subunit
Resistin PF06954 Family 33 70 80.60 53 68.14 Changed Resistin
Resolvase PF00239 Domain 129 4235 138.50 23 39.83 Changed Resolvase, N terminal domain
RESP18 PF14948 Family 15 128 92.60 38 13.23 Changed RESP18 domain
Response_reg PF00072 Domain 52 68630 112.20 25 27.70 Changed Response regulator receiver domain
RestrictionMunI PF11407 Family 3 6 150.20 44 97.51 Changed Type II restriction enzyme MunI
RestrictionSfiI PF11487 Family 1 5 228.80 56 94.31 Changed Type II restriction enzyme SfiI
Reticulon PF02453 Family 248 1424 153.00 24 42.85 Changed Reticulon
Retinal PF15449 Family 19 81 847.70 36 97.27 Changed Retinal protein
Retinin_C PF04527 Family 21 142 72.90 43 52.85 Changed Drosophila Retinin like protein
Retrotrans_gag PF03732 Family 56 3711 93.30 17 13.55 Changed Retrotransposon gag protein
Retrotran_gag_2 PF14223 Family 93 2724 117.60 15 24.08 Changed gag-polypeptide of LTR copia-type
Retrotran_gag_3 PF14244 Family 19 144 42.60 28 14.40 Changed gag-polypeptide of LTR copia-type
Retro_M PF02813 Family 1 2 86.00 100 7.47 Changed Retroviral M domain
REV PF00424 Family 2 2 92.00 32 84.02 Changed REV protein (anti-repression trans-activator protein)
REV1_C PF16727 Domain 13 197 124.30 26 11.05 Changed DNA repair protein REV1 C-terminal domain
RexA PF15969 Family 1 2 273.50 20 94.64 Changed Intracellular sensor of Lambda phage, Abi component
RexB PF15968 Family 1 1 139.00 100 96.53 Changed Membrane-anchored ion channel, Abi component
RE_AccI PF09545 Family 3 11 200.80 22 86.53 Changed AccI restriction endonuclease
RE_Alw26IDE PF09665 Family 1 3 297.00 21 90.83 Changed Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI PF09491 Family 6 45 385.10 18 74.15 Changed AlwI restriction endonuclease
RE_ApaLI PF09499 Family 3 12 126.20 50 91.37 Changed ApaLI-like restriction endonuclease
RE_Bpu10I PF09549 Family 9 17 163.20 30 74.15 Changed Bpu10I restriction endonuclease
RE_Bsp6I PF09504 Family 3 5 158.00 26 92.61 Changed Bsp6I restriction endonuclease
RE_BstXI PF09552 Family 2 2 287.00 55 80.50 Changed BstXI restriction endonuclease
RE_CfrBI PF09516 Family 3 4 193.80 32 77.89 Changed CfrBI restriction endonuclease
RE_Eco29kI PF09517 Family 14 23 160.70 38 68.99 Changed Eco29kI restriction endonuclease
RE_Eco47II PF09553 Family 18 21 209.40 47 75.32 Changed Eco47II restriction endonuclease
RE_EcoO109I PF14511 Family 17 33 183.90 35 65.77 Changed Type II restriction endonuclease EcoO109I
RE_HaeII PF09554 Family 3 6 323.50 51 95.76 Changed HaeII restriction endonuclease
RE_HaeIII PF09556 Family 12 19 246.60 39 88.20 Changed HaeIII restriction endonuclease
RE_HindIII PF09518 Family 4 9 287.60 32 94.76 Changed HindIII restriction endonuclease
RE_HindVP PF09519 Family 13 19 292.40 42 91.73 Changed HindVP restriction endonuclease
RE_HpaII PF09561 Family 24 48 337.10 38 92.31 Changed HpaII restriction endonuclease
RE_LlaJI PF09563 Family 4 35 310.70 20 64.25 Changed LlaJI restriction endonuclease
RE_LlaMI PF09562 Family 1 2 245.00 30 94.23 Changed LlaMI restriction endonuclease
RE_MamI PF09567 Family 4 6 195.80 30 73.35 Changed MamI restriction endonuclease
RE_MjaI PF09568 Family 16 33 163.70 30 83.24 Changed MjaI restriction endonuclease
RE_NgoBV PF09564 Family 2 5 232.00 50 98.47 Changed NgoBV restriction endonuclease
RE_NgoFVII PF09565 Domain 18 61 192.20 17 64.43 Changed NgoFVII restriction endonuclease
RE_NgoPII PF09521 Family 11 13 246.60 44 93.39 Changed NgoPII restriction endonuclease
RE_R_Pab1 PF09522 Domain 3 4 118.20 34 60.18 Changed R.Pab1 restriction endonuclease
RE_SacI PF09566 Family 8 17 252.90 19 73.20 Changed SacI restriction endonuclease
RE_ScaI PF09569 Family 1 3 143.70 47 85.86 Changed ScaI restriction endonuclease
RE_SinI PF09570 Family 3 9 195.20 38 83.59 Changed SinI restriction endonuclease
RE_TaqI PF09573 Family 1 3 246.00 42 94.62 Changed TaqI restriction endonuclease
RE_TdeIII PF09520 Family 21 35 225.60 26 86.47 Changed Type II restriction endonuclease, TdeIII
RE_XamI PF09572 Family 7 15 235.90 40 79.24 Changed XamI restriction endonuclease
RE_XcyI PF09571 Family 3 5 267.20 42 91.07 Changed XcyI restriction endonuclease
RF-1 PF00472 Family 1082 5185 113.30 37 36.24 Changed RF-1 domain
RF3_C PF16658 Domain 324 1071 128.80 40 24.45 Changed Class II release factor RF3, C-terminal domain
RFamide_26RFa PF11109 Family 17 36 120.10 56 92.08 Changed Orexigenic neuropeptide Qrfp/P518
RFC1 PF08519 Domain 170 467 149.20 36 16.51 Changed Replication factor RFC1 C terminal domain
Rft-1 PF04506 Family 34 487 413.80 25 91.36 Changed Rft protein
RFX1_trans_act PF04589 Family 17 244 130.00 45 19.97 Changed RFX1 transcription activation region
RFX5_DNA_bdg PF14621 Domain 11 35 213.30 74 35.03 Changed RFX5 DNA-binding domain
RFXA_RFXANK_bdg PF15289 Domain 8 66 116.80 64 55.90 Changed Regulatory factor X-associated C-terminal binding domain
RFX_DNA_binding PF02257 Domain 79 943 77.20 44 8.77 Changed RFX DNA-binding domain
RGCC PF15151 Family 9 66 119.30 63 89.19 Changed Response gene to complement 32 protein family
RGM_C PF06534 Family 44 261 163.60 51 40.87 Changed Repulsive guidance molecule (RGM) C-terminus
RGM_N PF06535 Family 36 242 164.50 55 40.51 Changed Repulsive guidance molecule (RGM) N-terminus
RGP PF03214 Family 11 247 285.20 59 90.67 Changed Reversibly glycosylated polypeptide
Rgp1 PF08737 Family 78 506 246.50 21 53.62 Changed Rgp1
RgpF PF05045 Family 22 159 282.00 16 46.73 Changed Rhamnan synthesis protein F
RGS PF00615 Domain 63 4994 121.90 20 22.80 Changed Regulator of G protein signaling domain
RGS-like PF09128 Domain 7 304 169.10 39 14.54 Changed Regulator of G protein signalling-like domain
RGS12_us1 PF16613 Disordered 9 98 113.90 66 9.81 Changed Unstructured region of RGS12
RGS12_us2 PF16611 Disordered 7 61 71.40 73 6.10 Changed Unstructured region between RBD and GoLoco
RGS12_usC PF16612 Disordered 12 81 130.70 35 10.73 Changed C-terminal unstructured region of RGS12
RhaA PF06134 Domain 5 219 383.20 43 94.01 Changed L-rhamnose isomerase (RhaA)
Rhabdo_glycop PF00974 Family 4 16 445.20 23 85.48 Changed Rhabdovirus spike glycoprotein
Rhabdo_M1 PF03342 Family 1 1 227.00 100 98.70 Changed Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2 PF04785 Family 2 5 202.00 80 99.02 Changed Rhabdovirus matrix protein M2
Rhabdo_matrix PF03397 Family 1 1 168.00 100 86.15 Changed Rhabdovirus matrix protein
Rhabdo_ncap PF00945 Family 3 59 299.80 25 73.27 Changed Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2 PF03216 Family 1 2 269.50 24 68.40 Changed Rhabdovirus nucleoprotein
Rhabdo_NV PF02484 Family 1 1 111.00 100 100.00 Changed Rhabdovirus Non-virion protein
Rhamnogal_lyase PF06045 Family 4 252 170.00 46 30.98 Changed Rhamnogalacturonate lyase family
Rhamno_transf PF11316 Family 11 59 199.00 20 53.79 Changed Putative rhamnosyl transferase
RhaT PF06379 Family 2 121 321.50 36 97.75 Changed L-rhamnose-proton symport protein (RhaT)
RHD3 PF05879 Family 8 621 462.80 28 62.59 Changed Root hair defective 3 GTP-binding protein (RHD3)
RHD_dimer PF16179 Domain 58 830 99.10 37 11.97 Changed Rel homology dimerisation domain
RHD_DNA_bind PF00554 Domain 21 887 160.60 37 20.38 Changed Rel homology DNA-binding domain
RhgB_N PF09284 Domain 59 148 231.30 43 45.39 Changed Rhamnogalacturonan lyase B, N-terminal
RHH_1 PF01402 Domain 32 1508 38.50 24 36.44 Changed Ribbon-helix-helix protein, copG family
RHH_3 PF12651 Domain 15 89 42.50 25 46.08 Changed Ribbon-helix-helix domain
RHH_4 PF13467 Domain 145 246 66.30 36 65.65 Changed Ribbon-helix-helix domain
RHH_5 PF07878 Domain 18 128 41.20 26 53.55 Changed CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
RHH_6 PF16762 Domain 11 20 75.00 42 88.76 Changed Ribbon-helix-helix domain
RHH_7 PF16777 Domain 3 3 66.70 41 93.02 Changed Transcriptional regulator, RHH-like, CopG
RHIM PF12721 Family 31 191 54.40 23 10.64 Changed RIP homotypic interaction motif
RHINO PF15319 Family 22 59 228.50 46 97.74 Changed RAD9, RAD1, HUS1-interacting nuclear orphan protein
Rhodanese PF00581 Domain 143 14452 105.70 19 39.19 Changed Rhodanese-like domain
Rhodanese_C PF12368 Family 190 483 68.20 35 16.70 Changed Rhodanase C-terminal
RhodobacterPufX PF11511 Family 5 3 68.30 24 85.77 Changed Intrinsic membrane protein PufX
Rhodopsin_N PF10413 Domain 5 105 35.70 80 9.94 Changed Amino terminal of the G-protein receptor rhodopsin
RhoGAP PF00620 Domain 85 9313 147.20 25 17.31 Changed RhoGAP domain
RhoGAP-FF1 PF16512 Domain 28 197 79.70 49 5.54 Changed p190-A and -B Rho GAPs FF domain
RhoGEF PF00621 Domain 175 8961 176.10 22 16.53 Changed RhoGEF domain
RhoGEF67_u1 PF16615 Disordered 16 138 46.70 45 6.11 Changed Unstructured region one on RhoGEF 6 and 7
RhoGEF67_u2 PF16614 Disordered 5 183 100.70 74 13.92 Changed Unstructured region two on RhoGEF 6 and 7
Rhomboid PF01694 Family 62 4907 149.10 21 44.30 Changed Rhomboid family
Rhomboid_N PF12122 Family 22 98 84.90 33 29.88 Changed Cytoplasmic N-terminal domain of rhomboid serine protease
Rhomboid_SP PF12595 Family 11 147 194.60 60 25.49 Changed Rhomboid serine protease
Rho_Binding PF08912 Domain 42 222 67.40 54 5.25 Changed Rho Binding
Rho_GDI PF02115 Domain 43 659 180.70 37 83.75 Changed RHO protein GDP dissociation inhibitor
Rho_N PF07498 Family 116 1625 40.80 32 9.35 Changed Rho termination factor, N-terminal domain
Rho_RNA_bind PF07497 Domain 308 1352 74.80 51 15.02 Changed Rho termination factor, RNA-binding domain
RHS PF03527 Family 33 298 36.70 35 3.40 Changed RHS protein
RHSP PF07999 Family 3 982 278.40 29 58.85 Changed Retrotransposon hot spot protein
RHS_repeat PF05593 Repeat 202 4470 37.70 29 8.90 Changed RHS Repeat
Rhv PF00073 Domain 49 59 156.20 15 13.51 Changed picornavirus capsid protein
Rib PF08428 Repeat 10 195 70.40 31 16.47 Changed Rib/alpha-like repeat
RIB43A PF05914 Family 70 225 314.90 30 90.33 Changed RIB43A
RibD_C PF01872 Family 27 3494 189.60 20 69.70 Changed RibD C-terminal domain
RIBIOP_C PF04950 Family 230 922 277.60 32 31.31 Changed 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Ribonuclease PF00545 Domain 160 430 85.10 30 46.45 Changed ribonuclease
Ribonuclease_3 PF00636 Family 230 2561 116.90 24 20.18 Changed Ribonuclease III domain
Ribonuclease_P PF00825 Family 97 1500 108.90 25 88.13 Changed Ribonuclease P
Ribonuclease_T2 PF00445 Domain 230 1030 174.30 23 61.46 Changed Ribonuclease T2 family
Ribonucleas_3_2 PF11469 Family 4 5 116.60 54 90.95 Changed Ribonuclease III
Ribonucleas_3_3 PF14622 Family 50 2026 130.10 33 41.13 Changed Ribonuclease-III-like
Ribonuc_2-5A PF06479 Family 175 567 124.30 36 13.38 Changed Ribonuclease 2-5A
Ribonuc_L-PSP PF01042 Domain 29 5042 116.60 27 67.67 Changed Endoribonuclease L-PSP
Ribonuc_P_40 PF08584 Family 53 273 237.50 23 69.82 Changed Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N PF08471 Family 68 222 97.30 48 8.82 Changed Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC PF02867 Family 79 2918 443.10 28 63.64 Changed Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN PF00317 Domain 134 1979 77.20 32 9.62 Changed Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm PF00268 Domain 333 1897 265.00 31 76.25 Changed Ribonucleotide reductase, small chain
Ribophorin_I PF04597 Family 191 476 400.40 31 80.70 Changed Ribophorin I
Ribophorin_II PF05817 Family 41 430 387.60 25 90.12 Changed Oligosaccharyltransferase subunit Ribophorin II
Ribosomal_60s PF00428 Family 73 2050 88.10 32 49.52 Changed 60s Acidic ribosomal protein
Ribosomal_L1 PF00687 Domain 683 3292 197.70 31 75.03 Changed Ribosomal protein L1p/L10e family
Ribosomal_L10 PF00466 Family 122 2936 99.40 24 43.04 Changed Ribosomal protein L10
Ribosomal_L11 PF00298 Domain 800 2804 69.70 40 43.51 Changed Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N PF03946 Domain 343 2794 57.40 46 35.63 Changed Ribosomal protein L11, N-terminal domain
Ribosomal_L12 PF00542 Domain 413 2272 66.50 50 44.92 Changed Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L12_N PF16320 Domain 596 1996 51.90 39 35.99 Changed Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L13 PF00572 Family 694 2719 120.30 39 70.35 Changed Ribosomal protein L13
Ribosomal_L13e PF01294 Family 117 569 167.20 48 80.32 Changed Ribosomal protein L13e
Ribosomal_L14 PF00238 Domain 344 2689 119.80 47 91.77 Changed Ribosomal protein L14p/L23e
Ribosomal_L14e PF01929 Family 158 510 73.40 38 45.24 Changed Ribosomal protein L14
Ribosomal_L15e PF00827 Family 102 724 174.70 58 82.63 Changed Ribosomal L15
Ribosomal_L16 PF00252 Family 536 2814 131.70 40 77.67 Changed Ribosomal protein L16p/L10e
Ribosomal_L17 PF01196 Family 696 2075 102.10 44 64.81 Changed Ribosomal protein L17
Ribosomal_L18 PF17135 Family 76 707 161.50 49 89.48 New Ribosomal protein 60S L18 and 50S L18e
Ribosomal_L18A PF01775 Domain 60 713 107.20 46 64.69 Changed Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Ribosomal_L18p PF00861 Family 16 1933 114.70 42 88.16 Changed Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Ribosomal_L18_c PF14204 Domain 170 676 89.00 42 31.05 Changed Ribosomal L18 C-terminal region
Ribosomal_L19 PF01245 Family 488 2065 110.00 43 74.25 Changed Ribosomal protein L19
Ribosomal_L19e PF01280 Family 142 787 133.10 56 45.13 Changed Ribosomal protein L19e
Ribosomal_L2 PF00181 Domain 26 2571 77.20 45 27.47 Changed Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20 PF00453 Family 443 1880 105.30 49 85.13 Changed Ribosomal protein L20
Ribosomal_L21e PF01157 Family 180 1048 89.60 55 54.56 Changed Ribosomal protein L21e
Ribosomal_L21p PF00829 Family 781 2078 100.00 37 71.98 Changed Ribosomal prokaryotic L21 protein
Ribosomal_L22 PF00237 Domain 868 2929 109.80 33 67.18 Changed Ribosomal protein L22p/L17e
Ribosomal_L22e PF01776 Family 109 630 104.90 52 77.64 Changed Ribosomal L22e protein family
Ribosomal_L23 PF00276 Family 733 3035 81.50 33 61.39 Changed Ribosomal protein L23
Ribosomal_L23eN PF03939 Family 144 749 50.30 54 29.36 Changed Ribosomal protein L23, N-terminal domain
ribosomal_L24 PF17136 Family 549 1839 64.20 41 53.04 New Ribosomal proteins 50S L24/mitochondrial 39S L24
Ribosomal_L24e PF01246 Family 122 1119 63.10 45 38.19 Changed Ribosomal protein L24e
Ribosomal_L25p PF01386 Domain 759 1335 88.40 29 44.87 Changed Ribosomal L25p family
Ribosomal_L26 PF16906 Family 117 734 110.50 54 75.39 Changed Ribosomal proteins L26 eukaryotic, L24P archaeal
Ribosomal_L27 PF01016 Family 441 2065 80.00 55 67.63 Changed Ribosomal L27 protein
Ribosomal_L27A PF00828 Family 573 2827 119.60 34 68.14 Changed Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Ribosomal_L27e PF01777 Family 98 567 82.30 50 54.52 Changed Ribosomal L27e protein family
Ribosomal_L28 PF00830 Family 508 2022 59.30 33 57.95 Changed Ribosomal L28 family
Ribosomal_L28e PF01778 Family 248 915 112.10 32 49.83 Changed Ribosomal L28e protein family
Ribosomal_L29 PF00831 Family 879 2284 56.60 37 63.83 Changed Ribosomal L29 protein
Ribosomal_L29e PF01779 Family 86 515 39.30 67 37.71 Changed Ribosomal L29e protein family
Ribosomal_L2_C PF03947 Domain 470 2703 126.40 47 45.66 Changed Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3 PF00297 Family 7 2956 176.70 30 66.68 Changed Ribosomal protein L3
Ribosomal_L30 PF00327 Domain 896 2667 50.90 31 36.68 Changed Ribosomal protein L30p/L7e
Ribosomal_L30_N PF08079 Domain 171 768 69.70 38 27.85 Changed Ribosomal L30 N-terminal domain
Ribosomal_L31 PF01197 Family 616 1871 69.70 45 86.70 Changed Ribosomal protein L31
Ribosomal_L31e PF01198 Family 122 933 78.20 52 61.32 Changed Ribosomal protein L31e
Ribosomal_L32e PF01655 Family 186 806 103.70 53 68.24 Changed Ribosomal protein L32
Ribosomal_L32p PF01783 Family 123 1908 55.20 33 67.48 Changed Ribosomal L32p protein family
Ribosomal_L33 PF00471 Family 445 2008 48.00 41 86.37 Changed Ribosomal protein L33
Ribosomal_L34 PF00468 Family 330 1721 43.80 56 70.23 Changed Ribosomal protein L34
Ribosomal_L34e PF01199 Family 102 622 90.40 50 72.32 Changed Ribosomal protein L34e
Ribosomal_L35Ae PF01247 Family 112 584 93.40 52 70.12 Changed Ribosomal protein L35Ae
Ribosomal_L35p PF01632 Family 678 1859 60.60 39 76.36 Changed Ribosomal protein L35
Ribosomal_L36 PF00444 Domain 215 1697 38.10 58 74.49 Changed Ribosomal protein L36
Ribosomal_L36e PF01158 Family 95 601 92.30 50 70.14 Changed Ribosomal protein L36e
Ribosomal_L37 PF08561 Family 84 380 84.60 29 52.32 Changed Mitochondrial ribosomal protein L37
Ribosomal_L37ae PF01780 Family 115 653 81.90 56 76.46 Changed Ribosomal L37ae protein family
Ribosomal_L37e PF01907 Family 91 605 52.00 58 52.35 Changed Ribosomal protein L37e
Ribosomal_L38e PF01781 Family 98 505 68.50 57 76.19 Changed Ribosomal L38e protein family
Ribosomal_L39 PF00832 Family 88 517 41.10 62 64.88 Changed Ribosomal L39 protein
Ribosomal_L4 PF00573 Family 123 2768 198.40 30 76.07 Changed Ribosomal protein L4/L1 family
Ribosomal_L40e PF01020 Family 33 602 46.50 62 33.10 Changed Ribosomal L40e family
Ribosomal_L41 PF05162 Family 6 107 24.80 84 32.77 Changed Ribosomal protein L41
Ribosomal_L44 PF00935 Family 92 710 75.10 63 59.19 Changed Ribosomal protein L44
Ribosomal_L5 PF00281 Domain 613 2425 55.90 45 28.89 Changed Ribosomal protein L5
Ribosomal_L50 PF10501 Domain 47 244 106.60 20 34.81 Changed Ribosomal subunit 39S
Ribosomal_L5e PF17144 Family 106 854 133.00 51 53.57 New Ribosomal large subunit proteins 60S L5, and 50S L18
Ribosomal_L5_C PF00673 Domain 489 2490 95.30 43 48.08 Changed ribosomal L5P family C-terminus
Ribosomal_L6 PF00347 Domain 94 5088 75.30 24 77.52 Changed Ribosomal protein L6
Ribosomal_L6e PF01159 Family 179 788 100.90 45 39.55 Changed Ribosomal protein L6e
Ribosomal_L6e_N PF03868 Domain 59 442 52.70 50 19.69 Changed Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae PF01248 Domain 52 4276 92.30 22 47.72 Changed Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C PF03948 Domain 1037 1669 84.90 32 52.37 Changed Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N PF01281 Domain 673 1912 46.60 42 26.06 Changed Ribosomal protein L9, N-terminal domain
Ribosomal_S10 PF00338 Family 425 2823 94.40 39 69.65 Changed Ribosomal protein S10p/S20e
Ribosomal_S11 PF00411 Family 7 2721 110.20 48 72.72 Changed Ribosomal protein S11
Ribosomal_S13 PF00416 Family 11 2611 105.60 42 81.29 Changed Ribosomal protein S13/S18
Ribosomal_S13_N PF08069 Domain 124 626 58.60 58 36.72 Changed Ribosomal S13/S15 N-terminal domain
Ribosomal_S14 PF00253 Family 420 2624 52.50 40 59.31 Changed Ribosomal protein S14p/S29e
Ribosomal_S15 PF00312 Domain 761 2730 79.80 38 56.91 Changed Ribosomal protein S15
Ribosomal_S16 PF00886 Family 738 2041 60.60 45 52.82 Changed Ribosomal protein S16
Ribosomal_S17 PF00366 Domain 673 2669 67.90 42 56.90 Changed Ribosomal protein S17
Ribosomal_S17e PF00833 Family 53 691 106.90 54 78.40 Changed Ribosomal S17
Ribosomal_S17_N PF16205 Family 81 567 65.20 61 38.53 Changed Ribosomal_S17 N-terminal
Ribosomal_S18 PF01084 Family 434 2268 51.70 44 43.20 Changed Ribosomal protein S18
Ribosomal_S19 PF00203 Domain 370 2583 79.30 49 72.31 Changed Ribosomal protein S19
Ribosomal_S19e PF01090 Family 175 717 129.10 45 82.04 Changed Ribosomal protein S19e
Ribosomal_S2 PF00318 Family 482 3636 149.90 31 70.29 Changed Ribosomal protein S2
Ribosomal_S20p PF01649 Family 779 1633 82.50 38 87.99 Changed Ribosomal protein S20
Ribosomal_S21 PF01165 Family 380 1832 54.60 36 61.90 Changed Ribosomal protein S21
Ribosomal_S21e PF01249 Family 78 509 76.50 55 69.44 Changed Ribosomal protein S21e
Ribosomal_S22 PF08136 Family 2 11 39.90 55 71.50 Changed 30S ribosomal protein subunit S22 family
Ribosomal_S24e PF01282 Family 180 821 78.00 51 56.56 Changed Ribosomal protein S24e
Ribosomal_S25 PF03297 Family 83 633 96.60 49 76.08 Changed S25 ribosomal protein
Ribosomal_S26e PF01283 Family 36 611 103.40 60 70.26 Changed Ribosomal protein S26e
Ribosomal_S27 PF01599 Domain 76 627 44.90 59 31.50 Changed Ribosomal protein S27a
Ribosomal_S27e PF01667 Family 7 694 53.90 63 54.32 Changed Ribosomal protein S27
Ribosomal_S28e PF01200 Family 50 579 61.60 62 74.26 Changed Ribosomal protein S28e
Ribosomal_S30 PF04758 Family 39 510 56.60 61 58.74 Changed Ribosomal protein S30
Ribosomal_S30AE PF02482 Family 957 1863 94.10 26 58.05 Changed Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae PF01015 Family 156 906 182.30 50 77.28 Changed Ribosomal S3Ae family
Ribosomal_S3_C PF00189 Domain 298 2337 82.50 48 33.85 Changed Ribosomal protein S3, C-terminal domain
Ribosomal_S4 PF00163 Family 514 2600 95.50 28 47.68 Changed Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e PF00900 Family 195 837 72.80 54 27.22 Changed Ribosomal family S4e
Ribosomal_S4Pg PF11993 Family 19 34 163.20 27 95.05 Changed Ribosomal S4P (gammaproteobacterial)
Ribosomal_S5 PF00333 Domain 465 2861 64.40 44 27.40 Changed Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 Domain 582 2898 70.80 37 30.51 Changed Ribosomal protein S5, C-terminal domain
Ribosomal_S6 PF01250 Domain 908 2053 90.10 28 71.14 Changed Ribosomal protein S6
Ribosomal_S6e PF01092 Family 133 790 117.20 55 50.93 Changed Ribosomal protein S6e
Ribosomal_S7 PF00177 Domain 501 2767 146.30 37 80.04 Changed Ribosomal protein S7p/S5e
Ribosomal_S7e PF01251 Family 75 607 171.30 51 85.23 Changed Ribosomal protein S7e
Ribosomal_S8 PF00410 Domain 506 2660 127.20 37 93.16 Changed Ribosomal protein S8
Ribosomal_S8e PF01201 Family 284 1183 195.70 36 87.69 Changed Ribosomal protein S8e
Ribosomal_S9 PF00380 Family 762 2676 122.50 43 70.88 Changed Ribosomal protein S9/S16
Ribosomal_TL5_C PF14693 Domain 747 1198 84.90 27 40.72 Changed Ribosomal protein TL5, C-terminal domain
Ribosom_S12_S23 PF00164 Family 12 2721 122.70 50 88.10 Changed Ribosomal protein S12/S23
Ribosom_S30AE_C PF16321 Domain 400 1050 56.40 39 28.73 Changed Sigma 54 modulation/S30EA ribosomal protein C terminus
Ribos_L4_asso_C PF14374 Domain 108 528 75.00 44 19.86 Changed 60S ribosomal protein L4 C-terminal domain
Ribul_P_3_epim PF00834 Domain 12 2416 193.40 43 85.65 Changed Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A PF06026 Family 591 1394 171.10 38 69.60 Changed Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse PF02267 Domain 37 164 208.70 36 78.73 Changed ADP-ribosyl cyclase
Rib_recp_KP_reg PF05104 Family 16 85 134.80 52 12.51 Changed Ribosome receptor lysine/proline rich region
RIC1 PF07064 Family 84 400 248.50 32 21.68 Changed RIC1
RIC3 PF15361 Family 32 169 171.90 25 41.69 Changed Resistance to inhibitors of cholinesterase homologue 3
Ric8 PF10165 Family 115 446 388.30 28 81.30 Changed Guanine nucleotide exchange factor synembryn
RICH PF05062 Domain 25 1 78.00 100 11.13 Changed RICH domain
RicinB_lectin_2 PF14200 Domain 275 1349 83.10 23 25.69 Changed Ricin-type beta-trefoil lectin domain-like
Ricin_B_lectin PF00652 Domain 85 3062 120.70 21 21.40 Changed Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti PF05433 Family 90 829 42.00 39 24.30 Changed Glycine zipper 2TM domain
RICTOR_M PF14666 Domain 106 350 209.90 33 15.19 Changed Rapamycin-insensitive companion of mTOR, middle domain
RICTOR_N PF14664 Domain 105 378 335.10 30 26.45 Changed Rapamycin-insensitive companion of mTOR, N-term
RICTOR_phospho PF14665 Domain 10 70 104.50 67 6.45 Changed Rapamycin-insensitive companion of mTOR, phosphorylation-site
RICTOR_V PF14668 Domain 109 334 71.30 44 5.13 Changed Rapamycin-insensitive companion of mTOR, domain 5
Rieske PF00355 Domain 55 6568 95.30 20 28.82 Changed Rieske [2Fe-2S] domain
Rieske_2 PF13806 Domain 49 632 105.80 29 36.51 Changed Rieske-like [2Fe-2S] domain
Rif1_N PF12231 Family 70 285 325.10 23 19.90 Changed Rap1-interacting factor 1 N terminal
Rifin_STEVOR PF02009 Family 161 441 261.50 29 93.00 Changed Rifin/stevor family
RIG-I_C-RD PF11648 Domain 75 240 113.90 30 13.78 Changed C-terminal domain of RIG-I
RIH_assoc PF08454 Family 72 781 110.70 47 3.38 Changed RyR and IP3R Homology associated
RIIa PF02197 Domain 12 684 36.90 31 10.02 Changed Regulatory subunit of type II PKA R-subunit
RII_binding_1 PF10522 Motif 9 120 19.00 46 1.74 Changed RII binding domain
RILP PF11461 Family 37 239 55.60 44 16.95 Changed Rab interacting lysosomal protein
RimK PF08443 Domain 4 1560 164.40 23 32.67 Changed RimK-like ATP-grasp domain
RimM PF01782 Domain 130 1544 83.60 24 43.53 Changed RimM N-terminal domain
RinB PF06116 Family 2 4 48.20 56 88.94 Changed Transcriptional activator RinB
RINGv PF12906 Domain 21 2794 49.70 37 10.63 Changed RING-variant domain
Ring_hydroxyl_A PF00848 Domain 48 1438 196.60 16 52.77 Changed Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B PF00866 Domain 24 369 140.30 25 82.14 Changed Ring hydroxylating beta subunit
RINT1_TIP1 PF04437 Family 64 447 446.40 22 62.54 Changed RINT-1 / TIP-1 family
RIO1 PF01163 Family 27 1688 165.20 29 40.36 Changed RIO1 family
Rio2_N PF09202 Domain 27 498 82.00 47 18.97 Changed Rio2, N-terminal
RIP PF00161 Domain 43 280 172.20 18 51.54 Changed Ribosome inactivating protein
Ripply PF14998 Family 33 130 79.80 50 58.79 Changed Transcription Regulator
RisS_PPD PF16524 Domain 37 71 107.30 42 23.40 Changed Periplasmic domain of Sensor histidine kinase RisS
Rit1_C PF17184 Domain 115 271 245.40 40 54.51 New Rit1 N-terminal domain
RITA PF17066 Family 11 52 228.60 51 94.54 Changed RBPJ-interacting and tubulin associated protein
RIX1 PF08167 Domain 95 324 185.40 21 23.36 Changed rRNA processing/ribosome biogenesis
RL11D PF11088 Family 2 2 95.50 32 92.72 Changed Glycoprotein encoding membrane proteins RL5A and RL6
RLAN PF14401 Family 81 118 151.10 31 32.09 Changed RimK-like ATPgrasp N-terminal domain
RLI PF04068 Family 70 990 33.00 38 7.30 Changed Possible Fer4-like domain in RNase L inhibitor, RLI
RLL PF10036 Family 48 176 226.90 40 91.14 Changed Putative carnitine deficiency-associated protein
RloB PF13707 Domain 141 226 179.10 20 85.74 Changed RloB-like protein
RMF PF04957 Family 31 93 53.40 55 84.12 Changed Ribosome modulation factor
RMI1_C PF16099 Family 31 152 135.10 27 23.23 Changed Recq-mediated genome instability protein 1, C-terminal OB-fold
RMI1_N PF08585 Domain 109 669 148.30 24 33.79 Changed RecQ mediated genome instability protein
RMI2 PF16100 Family 31 103 116.80 35 71.71 Changed RecQ-mediated genome instability protein 2
RmlD_sub_bind PF04321 Domain 25 2090 274.50 25 85.09 Changed RmlD substrate binding domain
RMMBL PF07521 Motif 99 3260 63.30 23 10.44 Changed Zn-dependent metallo-hydrolase RNA specificity domain
RMP PF14996 Family 25 98 140.30 41 67.39 Changed Retinal Maintenance
RmuC PF02646 Family 360 939 290.50 26 66.06 Changed RmuC family
RNA12 PF10443 Family 17 262 327.40 31 51.38 Changed RNA12 protein
RnaseA PF00074 Domain 172 593 115.40 28 71.73 Changed Pancreatic ribonuclease
RNaseH_C PF09293 Domain 2 2 123.00 41 40.00 Changed T4 RNase H, C terminal
RNaseH_like PF04308 Family 58 91 142.50 34 79.03 Changed Ribonuclease H-like
RNase_E_G PF10150 Family 615 1635 262.80 38 38.21 Changed Ribonuclease E/G family
RNase_H PF00075 Domain 24 3130 135.10 24 37.21 Changed RNase H
RNase_H2-Ydr279 PF09468 Family 126 416 291.50 20 87.61 Changed Ydr279p protein family (RNase H2 complex component)
RNase_H2_suC PF08615 Family 19 351 126.70 25 69.99 Changed Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
RNase_HII PF01351 Family 11 2402 184.40 32 74.95 Changed Ribonuclease HII
RNase_H_2 PF13482 Domain 83 546 168.70 20 33.39 Changed RNase_H superfamily
RNase_PH PF01138 Domain 160 6879 133.00 23 40.80 Changed 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 Domain 87 4722 68.00 22 18.53 Changed 3' exoribonuclease family, domain 2
RNase_P_p30 PF01876 Domain 41 533 203.70 24 66.45 Changed RNase P subunit p30
RNase_P_pop3 PF08228 Family 5 127 152.40 23 58.29 Changed RNase P subunit Pop3
RNase_P_Rpp14 PF01900 Family 220 566 109.20 24 66.35 Changed Rpp14/Pop5 family
RNase_T PF00929 Family 41 7420 160.10 18 34.97 Changed Exonuclease
RNase_Zc3h12a PF11977 Domain 21 662 148.10 46 21.93 Changed Zc3h12a-like Ribonuclease NYN domain
RNase_Zc3h12a_2 PF14626 Family 4 21 113.30 30 19.89 Changed Zc3h12a-like Ribonuclease NYN domain
RNA_bind PF08675 Domain 11 100 76.00 60 13.01 Changed RNA binding domain
RNA_binding PF01877 Family 99 196 113.80 24 74.57 Changed RNA binding
RNA_bind_2 PF10133 Family 82 116 59.30 33 90.72 Changed Predicted RNA-binding protein
RNA_capsid PF03035 Family 34 1 211.00 100 99.53 Changed Calicivirus putative RNA polymerase/capsid protein
RNA_GG_bind PF10258 Domain 65 206 82.20 37 19.96 Changed PHAX RNA-binding domain
RNA_helicase PF00910 Domain 99 130 95.40 23 9.66 Changed RNA helicase
RNA_ligase PF09414 Family 184 324 178.80 19 47.11 Changed RNA ligase
RNA_lig_T4_1 PF09511 Family 142 272 224.80 39 30.28 Changed RNA ligase
RNA_Me_trans PF04252 Family 97 230 189.60 42 84.37 Changed Predicted SAM-dependent RNA methyltransferase
RNA_pol PF00940 Family 225 557 410.60 43 39.58 Changed DNA-dependent RNA polymerase
RNA_polI_A14 PF08203 Family 24 44 74.70 39 50.48 Changed Yeast RNA polymerase I subunit RPA14
RNA_polI_A34 PF08208 Family 79 254 218.80 18 57.63 Changed DNA-directed RNA polymerase I subunit RPA34.5
RNA_pol_3_Rpc31 PF11705 Family 97 438 201.00 23 87.36 Changed DNA-directed RNA polymerase III subunit Rpc31
RNA_pol_A_bac PF01000 Domain 59 2718 122.30 25 37.11 Changed RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD PF03118 Domain 64 1760 66.20 44 19.45 Changed Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_inhib PF16857 Domain 12 1 47.00 100 73.44 Changed RNA polymerase inhibitor
RNA_pol_I_A49 PF06870 Family 110 413 345.60 19 83.28 Changed A49-like RNA polymerase I associated factor
RNA_pol_I_TF PF04090 Family 10 134 180.30 20 41.88 Changed RNA polymerase I specific initiation factor
RNA_pol_L PF01193 Domain 469 2750 213.60 24 66.05 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2 PF13656 Domain 274 927 73.90 37 52.65 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD PF02150 Domain 9 859 36.00 34 27.43 Changed RNA polymerases M/15 Kd subunit
RNA_pol_N PF01194 Domain 119 526 58.90 59 74.96 Changed RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25 PF08292 Domain 23 420 116.50 35 52.99 Changed RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4 PF06883 Domain 141 388 58.70 42 5.15 Changed RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1 PF04997 Domain 25 3292 331.10 30 24.68 Changed RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 Domain 19 4456 117.10 36 11.60 Changed RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 Domain 112 3342 162.00 22 11.74 Changed RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 Domain 106 3123 97.20 26 6.85 Changed RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 Domain 24 3698 451.70 25 35.84 Changed RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6 PF04992 Domain 145 483 175.90 38 10.69 Changed RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7 PF04990 Domain 92 457 133.20 47 7.77 Changed RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R PF05001 Repeat 106 5396 14.00 79 13.98 Changed RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1 PF04563 Family 13 3102 413.00 20 34.95 Changed RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 Domain 22 4175 144.60 19 16.59 Changed RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 Domain 138 3147 66.80 48 5.62 Changed RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 Domain 290 1070 62.00 42 5.57 Changed RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_45 PF10385 Domain 806 1567 67.60 42 5.28 Changed RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_5 PF04567 Domain 162 1066 49.80 43 4.45 Changed RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 Domain 74 3418 393.80 37 35.34 Changed RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 Domain 46 3172 85.10 44 7.27 Changed RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4 PF03874 Family 53 951 114.40 22 69.26 Changed RNA polymerase Rpb4
RNA_pol_Rpb5_C PF01191 Domain 171 691 71.00 53 36.42 Changed RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N PF03871 Domain 147 539 90.60 34 41.40 Changed RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6 PF01192 Family 435 2036 56.30 27 55.34 Changed RNA polymerase Rpb6
RNA_pol_Rpb8 PF03870 Family 130 443 132.40 41 87.93 Changed RNA polymerase Rpb8
RNA_pol_RpbG PF16992 Family 8 17 114.10 26 96.33 Changed DNA-directed RNA polymerase, subunit G
RNA_pol_Rpc34 PF05158 Family 14 543 244.40 24 90.29 Changed RNA polymerase Rpc34 subunit
RNA_pol_Rpc4 PF05132 Family 183 463 130.80 25 31.48 Changed RNA polymerase III RPC4
RNA_pol_Rpc82 PF05645 Family 29 371 238.00 17 42.11 Changed RNA polymerase III subunit RPC82
RNA_pol_Rpo13 PF12136 Domain 7 9 42.00 35 43.05 Changed RNA polymerase Rpo13 subunit HTH domain
RNA_replicase_B PF03431 Family 6 2 536.50 29 94.87 Changed RNA replicase, beta-chain
RNB PF00773 Domain 59 3367 303.70 30 37.08 Changed RNB domain
Rnf-Nqr PF02508 Family 734 1807 189.50 36 90.64 Changed Rnf-Nqr subunit, membrane protein
RNF111_N PF15303 Family 11 139 244.40 47 37.69 Changed E3 ubiquitin-protein ligase Arkadia N-terminus
RNF220 PF15926 Family 9 221 159.10 30 45.93 Changed E3 ubiquitin-protein ligase RNF220
RnfC_N PF13375 Domain 63 727 96.50 34 19.23 Changed RnfC Barrel sandwich hybrid domain
RNHCP PF12647 Domain 77 146 86.40 44 66.24 Changed RNHCP domain
Rnk_N PF14760 Domain 103 176 40.60 38 27.91 Changed Rnk N-terminus
RnlA_toxin PF15935 Domain 9 18 199.10 20 56.24 Changed RNase LS, bacterial toxin
RnlB_antitoxin PF15933 Family 10 18 93.60 22 76.77 Changed Antitoxin to bacterial toxin RNase LS or RnlA
RNR_inhib PF08591 Family 43 141 96.00 28 41.46 Changed Ribonucleotide reductase inhibitor
RNR_N PF08343 Family 150 315 80.60 41 11.39 Changed Ribonucleotide reductase N-terminal
Robl_LC7 PF03259 Domain 38 1474 89.50 22 65.32 Changed Roadblock/LC7 domain
Roc PF08477 Domain 190 1181 110.00 21 12.46 Changed Ras of Complex, Roc, domain of DAPkinase
Rod-binding PF10135 Family 303 527 49.30 27 22.45 Changed Rod binding protein
Rod_C PF10493 Domain 19 148 427.70 30 27.43 Changed Rough deal protein C-terminal region
Rod_cone_degen PF15201 Family 3 17 52.30 77 91.46 Changed Progressive rod-cone degeneration
ROF PF07073 Family 41 92 75.80 37 86.72 Changed Modulator of Rho-dependent transcription termination (ROF)
Rogdi_lz PF10259 Family 89 290 266.20 24 82.33 Changed Rogdi leucine zipper containing protein
ROK PF00480 Family 11 5087 276.00 22 80.39 Changed ROK family
ROKNT PF08067 Domain 9 132 42.00 80 10.11 Changed ROKNT (NUC014) domain
RolB_RolC PF02027 Family 13 16 208.80 22 61.14 Changed RolB/RolC glucosidase family
Romo1 PF10247 Family 63 349 64.20 46 53.55 Changed Reactive mitochondrial oxygen species modulator 1
rOmpB PF12334 Family 1 1 217.00 100 13.21 Changed Rickettsia outer membrane protein B
Rootletin PF15035 Family 53 267 175.10 35 10.34 Changed Ciliary rootlet component, centrosome cohesion
Root_cap PF06830 Family 48 248 56.00 53 16.48 Changed Root cap
Rop PF01815 Domain 5 15 52.90 72 86.76 Changed Rop protein
Rop-like PF05082 Family 60 99 63.20 39 88.48 Changed Rop-like
Rossmann-like PF10727 Domain 5 329 118.70 31 39.93 Changed Rossmann-like domain
ROS_MUCR PF05443 Family 229 393 122.70 41 76.91 Changed ROS/MUCR transcriptional regulator protein
Rot1 PF10681 Family 65 174 198.00 41 82.81 Changed Chaperone for protein-folding within the ER, fungal
Rotamase PF00639 Domain 42 1933 96.80 25 33.66 Changed PPIC-type PPIASE domain
Rotamase_2 PF13145 Domain 114 881 122.80 16 28.95 Changed PPIC-type PPIASE domain
Rotamase_3 PF13616 Domain 20 1919 110.10 29 30.57 Changed PPIC-type PPIASE domain
Rotavirus_VP1 PF12289 Domain 2 2 312.50 42 28.70 Changed Rotavirus VP1 C-terminal domain
Rotavirus_VP3 PF06929 Family 2 2 689.50 38 90.25 Changed Rotavirus VP3 protein
Rotavirus_VP7 PF05868 Family 3 1 251.00 100 97.29 Changed Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6 PF00980 Family 2 2 395.50 42 99.87 Changed Rotavirus major capsid protein VP6
Rota_NS26 PF01525 Family 6 4 153.50 33 60.08 Changed Rotavirus NS26
Rota_NS35 PF02509 Family 2 2 313.50 36 99.68 Changed Rotavirus non-structural protein 35
Rota_NS53 PF00981 Family 14 2 378.00 20 84.94 Changed Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6 PF04866 Family 1 1 92.00 100 100.00 Changed Rotavirus non-structural protein 6
Rota_NSP3 PF01665 Family 2 2 290.50 27 81.03 Changed Rotavirus non-structural protein NSP3
Rota_NSP4 PF01452 Family 1 1 173.00 100 98.86 Changed Rotavirus non structural protein
Rota_VP2 PF05087 Family 2 2 883.00 48 100.00 Changed Rotavirus VP2 protein
Roughex PF06020 Family 2 12 279.80 41 91.25 Changed Drosophila roughex protein
Rox3 PF08633 Family 63 146 193.10 30 59.21 Changed Rox3 mediator complex subunit
RP-C PF03428 Domain 55 111 171.40 34 41.59 Changed Replication protein C N-terminal domain
RP-C_C PF11800 Family 52 106 212.70 28 51.05 Changed Replication protein C C-terminal region
RP1-2 PF12042 Domain 17 0 0.00 0 0.00 Changed Tubuliform egg casing silk strands structural domain
RPA PF10134 Family 22 213 225.60 34 64.45 Changed Replication initiator protein A
RPAP1_C PF08620 Family 117 362 70.60 43 7.44 Changed RPAP1-like, C-terminal
RPAP1_N PF08621 Family 136 347 45.40 36 5.00 Changed RPAP1-like, N-terminal
RPAP2_Rtr1 PF04181 Family 138 388 75.50 31 16.88 Changed Rtr1/RPAP2 family
RPAP3_C PF13877 Domain 159 406 92.30 24 17.76 Changed Potential Monad-binding region of RPAP3
RPA_C PF08784 Domain 15 421 101.10 20 35.39 Changed Replication protein A C terminal
RPA_interact_C PF14768 Family 81 162 80.90 32 33.48 Changed Replication protein A interacting C-terminal
RPA_interact_M PF14767 Family 27 115 74.80 34 34.31 Changed Replication protein A interacting middle
RPA_interact_N PF14766 Family 41 144 39.20 42 16.40 Changed Replication protein A interacting N-terminal
RPE65 PF03055 Family 581 1781 427.90 22 87.44 Changed Retinal pigment epithelial membrane protein
RPEL PF02755 Family 146 2039 23.60 44 9.15 Changed RPEL repeat
RPM2 PF08579 Family 6 42 123.00 33 10.48 Changed Mitochondrial ribonuclease P subunit (RPM2)
RPN13_C PF16550 Domain 59 351 117.20 29 32.62 Changed UCH-binding domain
Rpn3_C PF08375 Family 74 445 65.10 51 12.79 Changed Proteasome regulatory subunit C-terminal
RPN7 PF10602 Family 58 884 170.40 29 39.57 Changed 26S proteasome subunit RPN7
rpo132 PF12415 Family 8 11 31.90 54 2.75 Changed Poxvirus DNA dependent RNA polymerase
rpo30_N PF12410 Family 9 11 135.20 58 57.06 Changed Poxvirus DNA dependent RNA polymerase 30kDa subunit
RPOL_N PF14700 Domain 194 506 287.00 22 26.43 Changed DNA-directed RNA polymerase N-terminal
Rpp20 PF12328 Family 39 218 124.70 28 68.80 Changed Rpp20 subunit of nuclear RNase MRP and P
Rpr2 PF04032 Family 291 568 98.10 22 47.50 Changed RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPS31 PF17067 Family 1 76 82.90 40 72.59 Changed Ribosomal protein S31e
RPT PF13446 Domain 172 495 58.80 22 12.98 Changed A repeated domain in UCH-protein
RPW8 PF05659 Family 15 137 130.20 24 20.99 Changed Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC PF09382 Domain 121 1624 114.40 23 13.72 Changed RQC domain
RraB PF06877 Domain 105 202 101.70 28 65.01 Changed Regulator of ribonuclease activity B
RRF PF01765 Domain 985 2080 161.70 38 79.65 Changed Ribosome recycling factor
Rrf2 PF02082 Family 112 3009 81.70 30 53.21 Changed Transcriptional regulator
RRF_GI PF12614 Family 14 21 124.80 39 96.75 Changed Ribosome recycling factor
RRG8 PF17068 Family 5 23 245.90 27 95.32 Changed Required for respiratory growth protein 8 mitochondrial
RRM PF10378 Domain 14 135 59.30 42 6.90 Changed Putative RRM domain
RRM_1 PF00076 Domain 72 72376 67.40 22 23.15 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2 PF04059 Family 4 609 93.20 46 16.33 Changed RNA recognition motif 2
RRM_3 PF08777 Domain 12 354 101.40 27 22.28 Changed RNA binding motif
RRM_4 PF10598 Domain 41 452 90.60 74 4.04 Changed RNA recognition motif of the spliceosomal PrP8
RRM_5 PF13893 Domain 9 1173 76.70 30 20.75 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_7 PF16367 Domain 17 530 90.50 56 16.31 Changed RNA recognition motif
RRM_DME PF15628 Family 18 157 93.00 60 6.97 Changed RRM in Demeter
RRM_occluded PF16842 Domain 49 147 79.20 38 7.82 Changed Occluded RNA-recognition motif
RRM_u2 PF16651 Disordered 53 200 217.80 19 25.75 Changed Unstructured region on RNA-binding-domain protein
RRN3 PF05327 Family 110 513 450.00 24 79.54 Changed RNA polymerase I specific transcription initiation factor RRN3
Rrn6 PF10214 Family 53 185 627.10 16 77.33 Changed RNA polymerase I-specific transcription-initiation factor
RRN9 PF10680 Domain 50 111 71.80 33 12.61 Changed RNA polymerase I specific transcription initiation factor
RrnaAD PF00398 Domain 11 2884 245.80 26 81.08 Changed Ribosomal RNA adenine dimethylase
rRNA_methylase PF06962 Family 214 347 136.20 36 65.93 Changed Putative rRNA methylase
rRNA_proc-arch PF13234 Domain 296 991 250.00 20 23.66 Changed rRNA-processing arch domain
rRNA_processing PF08524 Domain 29 259 145.10 21 72.70 Changed rRNA processing
RRP14 PF15459 Family 56 234 55.40 41 11.37 Changed 60S ribosome biogenesis protein Rrp14
Rrp15p PF07890 Family 156 406 139.40 30 50.06 Changed Rrp15p
RRP7 PF12923 Family 151 415 128.90 30 42.71 Changed Ribosomal RNA-processing protein 7 (RRP7)
RRS1 PF04939 Family 160 432 160.90 38 57.35 Changed Ribosome biogenesis regulatory protein (RRS1)
RRT14 PF17075 Family 12 39 193.00 33 94.57 Changed Regular of rDNA transcription protein 14
RRXRR PF14239 Family 59 170 160.00 38 42.95 Changed RRXRR protein
RR_TM4-6 PF06459 Family 59 342 245.00 36 5.87 Changed Ryanodine Receptor TM 4-6
RS4NT PF08071 Domain 58 725 35.40 65 13.21 Changed RS4NT (NUC023) domain
Rsa3 PF14615 Family 68 146 45.90 36 24.85 Changed Ribosome-assembly protein 3
RsbRD_N PF14361 Family 126 213 101.20 20 31.07 Changed RsbT co-antagonist protein rsbRD N-terminal domain
Rsbr_N PF08678 Domain 14 26 128.40 29 46.07 Changed Rsbr N terminal
RsbU_N PF08673 Domain 29 55 75.80 31 18.73 Changed Phosphoserine phosphatase RsbU, N-terminal domain
RSB_motif PF16294 Motif 31 262 95.80 34 11.87 Changed RNSP1-SAP18 binding (RSB) motif
Rsc14 PF08586 Family 14 23 99.20 52 51.58 Changed RSC complex, Rsc14/Ldb7 subunit
RSD-2 PF07547 Domain 17 27 83.70 30 13.73 Changed RSD-2 N-terminal domain
RsdA_SigD_bd PF16751 Domain 21 39 46.10 42 12.89 Changed Anti-sigma-D factor RsdA to sigma factor binding region
Rsd_AlgQ PF04353 Family 62 110 146.40 37 92.92 Changed Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C PF03873 Domain 51 111 55.10 37 26.73 Changed Anti sigma-E protein RseA, C-terminal domain
RseA_N PF03872 Domain 44 242 94.50 28 45.98 Changed Anti sigma-E protein RseA, N-terminal domain
RseC_MucC PF04246 Family 202 402 129.00 21 88.14 Changed Positive regulator of sigma(E), RseC/MucC
RSF PF14876 Family 2 12 266.80 45 62.35 Changed Respiratory growth transcriptional regulator
RsfS PF02410 Family 981 1868 101.10 31 54.09 Changed Ribosomal silencing factor during starvation
RsgA_N PF16745 Domain 72 639 55.70 36 18.66 Changed RsgA N-terminal domain
RsgI_N PF12791 Family 49 102 54.00 21 13.53 Changed Anti-sigma factor N-terminus
RskA PF10099 Family 242 445 192.70 18 75.08 Changed Anti-sigma-K factor rskA
Rsm1 PF08600 Domain 10 248 91.40 24 20.23 Changed Rsm1-like
Rsm22 PF09243 Family 6 728 216.40 19 50.04 Changed Mitochondrial small ribosomal subunit Rsm22
RsmF_methylt_CI PF17126 Domain 122 249 63.60 36 13.82 Changed RsmF rRNA methyltransferase first C-terminal domain
RsmJ PF04378 Domain 7 365 243.00 37 86.98 Changed Ribosomal RNA large subunit methyltransferase D, RlmJ
RSN1_7TM PF02714 Family 79 1917 253.30 23 30.31 Changed Calcium-dependent channel, 7TM region, putative phosphate
RSN1_TM PF13967 Family 142 1703 154.30 22 17.78 Changed Late exocytosis, associated with Golgi transport
RSRP PF17069 Family 3 119 250.90 42 23.86 Changed Arginine/Serine-Rich protein 1
RSS_P20 PF11757 Family 3 0 0.00 0 0.00 Changed Suppressor of RNA silencing P21-like
RST PF12174 Domain 59 271 65.10 32 11.62 Changed RCD1-SRO-TAF4 (RST) plant domain
RSV_NS2 PF03113 Family 1 1 124.00 100 100.00 Changed Respiratory synctial virus non-structural protein NS2
RTA1 PF04479 Family 265 1849 206.10 27 66.36 Changed RTA1 like protein
RTBV_P12 PF06361 Family 1 1 110.00 100 100.00 Changed Rice tungro bacilliform virus P12 protein
RTBV_P46 PF06216 Family 1 1 389.00 100 100.00 Changed Rice tungro bacilliform virus P46 protein
RTC PF01137 Domain 179 909 319.80 25 86.77 Changed RNA 3'-terminal phosphate cyclase
RTC4 PF14474 Domain 107 221 116.60 26 23.76 Changed RTC4-like domain
RtcB PF01139 Family 295 1207 334.40 31 87.77 Changed tRNA-splicing ligase RtcB
RtcR PF06956 Family 42 66 180.60 50 33.88 Changed Regulator of RNA terminal phosphate cyclase
RTC_insert PF05189 Domain 277 750 103.50 28 28.49 Changed RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC PF09357 Family 57 154 181.20 28 75.32 Changed RteC protein
Rtf2 PF04641 Family 18 574 238.30 23 74.40 Changed Rtf2 RING-finger
RTP PF02334 Domain 1 20 120.00 60 98.68 Changed Replication terminator protein
RTP1_C1 PF10363 Family 140 312 114.30 29 11.83 Changed Required for nuclear transport of RNA pol II C-terminus 1
RTP1_C2 PF10304 Family 68 220 33.20 33 3.46 Changed Required for nuclear transport of RNA pol II C-terminus 2
RTP801_C PF07809 Family 45 169 115.00 45 53.54 Changed RTP801 C-terminal region
Rtt102p PF09510 Family 10 26 129.00 36 58.71 Changed Rtt102p-like transcription regulator protein
Rtt106 PF08512 Domain 233 1105 90.40 28 12.25 Changed Histone chaperone Rttp106-like
RTT107_BRCT_5 PF16770 Domain 68 574 97.30 25 10.12 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTT107_BRCT_6 PF16771 Domain 23 41 109.60 31 11.60 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTTN_N PF14726 Family 40 95 95.80 45 5.22 Changed Rotatin, an armadillo repeat protein, centriole functioning
RTX PF02382 Family 4 7 618.60 39 49.86 Changed RTX N-terminal domain
RtxA PF07634 Repeat 101 489 17.50 36 13.97 Changed RtxA repeat
RTX_C PF08339 Family 4 5 156.80 35 15.87 Changed RTX C-terminal domain
Rubella_Capsid PF05750 Family 1 1 300.00 100 28.22 Changed Rubella capsid protein
Rubella_E1 PF05748 Family 1 1 496.00 100 46.66 Changed Rubella membrane glycoprotein E1
Rubella_E2 PF05749 Family 1 1 267.00 100 25.12 Changed Rubella membrane glycoprotein E2
Rubis-subs-bind PF09273 Domain 155 878 127.90 17 25.84 Changed Rubisco LSMT substrate-binding
RuBisCO_large PF00016 Domain 21 600 253.70 39 65.66 Changed Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N PF02788 Domain 42 470 114.10 38 27.16 Changed Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small PF00101 Domain 94 580 97.30 34 58.04 Changed Ribulose bisphosphate carboxylase, small chain
Rubi_NSP_C PF12601 Family 1 1 66.00 100 3.12 Changed Rubivirus non-structural protein
Rubredoxin PF00301 Domain 26 1294 46.30 50 33.68 Changed Rubredoxin
Rubrerythrin PF02915 Domain 38 2234 113.80 24 58.58 Changed Rubrerythrin
RUN PF02759 Family 40 2022 137.60 21 17.97 Changed RUN domain
Runt PF00853 Domain 26 428 118.00 74 29.78 Changed Runt domain
RunxI PF08504 Family 10 222 93.70 68 21.95 Changed Runx inhibition domain
RusA PF05866 Family 94 253 115.50 20 73.71 Changed Endodeoxyribonuclease RusA
RuvA_C PF07499 Domain 92 1465 47.00 30 23.48 Changed RuvA, C-terminal domain
RuvA_N PF01330 Domain 933 1530 61.60 34 30.71 Changed RuvA N terminal domain
RuvB_C PF05491 Family 549 1573 74.90 53 21.88 Changed Holliday junction DNA helicase ruvB C-terminus
RuvB_N PF05496 Family 91 2212 207.10 42 55.40 Changed Holliday junction DNA helicase ruvB N-terminus
RuvC PF02075 Domain 5 1250 147.90 40 83.60 Changed Crossover junction endodeoxyribonuclease RuvC
RuvX PF03652 Family 136 1672 133.60 32 88.36 Changed Holliday junction resolvase
rve PF00665 Domain 92 12825 114.80 19 17.72 Changed Integrase core domain
rve_2 PF13333 Family 14 315 52.50 33 42.72 Changed Integrase core domain
rve_3 PF13683 Domain 64 1050 64.10 31 29.55 Changed Integrase core domain
RVP PF00077 Domain 9 341 91.60 22 15.38 Changed Retroviral aspartyl protease
RVP_2 PF08284 Domain 5 800 111.80 28 11.21 Changed Retroviral aspartyl protease
RVT_1 PF00078 Family 69 14387 168.80 16 23.67 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 Family 32 2852 159.00 24 22.16 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 Domain 49 3074 104.70 20 21.34 Changed Reverse transcriptase-like
RVT_connect PF06815 Domain 2 2 101.50 58 6.80 Changed Reverse transcriptase connection domain
RVT_N PF13655 Domain 117 302 77.10 47 18.20 Changed N-terminal domain of reverse transcriptase
RVT_thumb PF06817 Domain 22 95 62.50 46 10.31 Changed Reverse transcriptase thumb domain
RWD PF05773 Domain 117 2299 117.40 20 18.70 Changed RWD domain
RWP-RK PF02042 Family 108 681 48.60 46 8.66 Changed RWP-RK domain
RXLR PF16810 Family 18 269 125.10 16 74.84 Changed RXLR phytopathogen effector protein, Avirulence activity
RXT2_N PF08595 Family 65 149 135.10 34 30.15 Changed RXT2-like, N-terminal
Rxt3 PF08642 Family 82 231 103.00 36 13.22 Changed Histone deacetylation protein Rxt3
RYDR_ITPR PF01365 Family 74 1426 191.10 27 10.59 Changed RIH domain
RyR PF02026 Family 136 1400 88.20 37 7.69 Changed RyR domain
Rz1 PF06085 Family 6 5 41.40 57 66.56 Changed Lipoprotein Rz1 precursor
R_equi_Vir PF05526 Family 8 6 150.80 20 94.07 Changed Rhodococcus equi virulence-associated protein
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