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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
V-ATPase_C PF03223 Family 134 834 337.10 35 90.61 Changed V-ATPase subunit C
V-ATPase_G PF03179 Family 26 851 100.70 35 72.42 Changed Vacuolar (H+)-ATPase G subunit
V-ATPase_G_2 PF16999 Domain 12 62 101.60 25 93.88 Changed Vacuolar (H+)-ATPase G subunit
V-ATPase_H_C PF11698 Family 136 680 115.30 41 25.33 Changed V-ATPase subunit H
V-ATPase_H_N PF03224 Family 33 748 283.40 25 65.01 Changed V-ATPase subunit H
V-set PF07686 Domain 68 19848 103.20 18 37.29 Changed Immunoglobulin V-set domain
V-set_2 PF15910 Domain 8 105 114.90 39 54.48 Changed ICOS V-set domain
V-set_CD47 PF08204 Domain 12 84 121.90 47 42.28 Changed CD47 immunoglobulin-like domain
V-SNARE PF05008 Family 78 865 76.90 28 33.60 Changed Vesicle transport v-SNARE protein N-terminus
V-SNARE_C PF12352 Domain 20 2255 65.20 24 27.61 Changed Snare region anchored in the vesicle membrane C-terminus
v110 PF01639 Family 4 6 96.00 39 82.52 Changed Viral family 110
V1R PF03402 Family 2 1768 249.80 33 84.80 Changed Vomeronasal organ pheromone receptor family, V1R
V4R PF02830 Family 30 497 61.80 24 18.19 Changed V4R domain
Vac14_Fab1_bd PF12755 Domain 33 866 94.30 40 11.19 Changed Vacuolar 14 Fab1-binding region
Vac14_Fig4_bd PF11916 Domain 86 692 166.60 51 22.23 Changed Vacuolar protein 14 C-terminal Fig4p binding
Vac7 PF12751 Family 35 293 282.10 30 44.27 Changed Vacuolar segregation subunit 7
VacA PF02691 Family 2 2 527.50 24 68.55 Changed Vacuolating cyotoxin
VacA2 PF03077 Family 15 23 59.50 40 6.87 Changed Putative vacuolating cytotoxin
Vac_Fusion PF02346 Family 7 13 54.40 36 19.68 Changed Chordopoxvirus multifunctional envelope protein A27
Vac_ImportDeg PF09783 Family 87 591 169.10 39 50.44 Changed Vacuolar import and degradation protein
VAD1-2 PF15310 Family 12 36 208.40 46 48.89 Changed Vitamin A-deficiency (VAD) rat model signalling
Val_tRNA-synt_C PF10458 Domain 25 2425 65.60 33 7.35 Changed Valyl tRNA synthetase tRNA binding arm
Vanabin-2 PF11437 Family 8 8 94.60 33 52.68 Changed Vanadium-binding protein 2
VanW PF04294 Family 474 1208 129.40 35 28.15 Changed VanW like protein
VanY PF02557 Family 48 1307 128.60 28 44.65 Changed D-alanyl-D-alanine carboxypeptidase
VanZ PF04892 Family 419 2493 127.20 17 62.32 Changed VanZ like family
VapB_antitoxin PF09957 Domain 30 411 47.50 29 66.72 Changed Bacterial antitoxin of type II TA system, VapB
VAR1 PF05316 Family 5 12 253.10 26 75.21 Changed Mitochondrial ribosomal protein (VAR1)
VARLMGL PF14383 Domain 29 959 28.50 42 3.58 Changed DUF761-associated sequence motif
Varsurf_PPLC PF03490 Family 3 62 46.30 33 11.95 Changed Variant-surface-glycoprotein phospholipase C
Vasculin PF15337 Family 10 144 93.30 68 20.50 Changed Vascular protein family Vasculin-like 1
VasI PF11319 Family 23 64 174.40 25 77.96 Changed Type VI secretion system VasI, EvfG, VC_A0118
VasL PF12486 Family 16 53 140.70 32 34.08 Changed Type VI secretion system, EvfB, or VasL
Vasohibin PF14822 Family 16 208 202.30 51 63.99 Changed Vasohibin
VASP_tetra PF08776 Domain 24 304 36.40 56 7.26 Changed VASP tetramerisation domain
vATP-synt_AC39 PF01992 Family 357 1298 310.90 28 92.86 Changed ATP synthase (C/AC39) subunit
vATP-synt_E PF01991 Family 12 1264 184.00 28 86.18 Changed ATP synthase (E/31 kDa) subunit
Vault PF01505 Repeat 164 698 42.80 36 20.21 Changed Major Vault Protein repeat
VBS PF08913 Domain 5 311 116.30 45 6.07 Changed Vinculin Binding Site
VCBS PF13517 Repeat 780 9760 65.10 25 22.69 Changed Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
VCX_VCY PF15231 Family 5 77 98.30 60 103.87 Changed Variable charge X/Y family
VD10_N PF08476 Family 7 9 42.90 42 17.56 Changed Viral D10 N-terminal
VDE PF07137 Domain 2 126 178.70 50 43.84 Changed VDE lipocalin domain
VEFS-Box PF09733 Family 30 470 122.20 32 19.95 Changed VEFS-Box of polycomb protein
VEG PF06257 Family 123 400 71.80 40 83.73 Changed Biofilm formation stimulator VEG
VEGF_C PF14554 Domain 4 106 56.50 74 22.53 Changed VEGF heparin-binding domain
VEK-30 PF12107 Domain 8 0 0.00 0 0.00 Changed Plasminogen (Pg) ligand in fibrinolytic pathway
Vel1p PF10339 Family 5 20 185.10 73 98.46 Changed Yeast-specific zinc responsive
Velvet PF11754 Family 114 1425 142.30 22 50.09 Changed Velvet factor
VERL PF11386 Family 5 0 0.00 0 0.00 Changed Vitelline envelope receptor for lysin
Vert_HS_TF PF06546 Family 15 201 221.40 30 49.99 Changed Vertebrate heat shock transcription factor
Vert_IL3-reg_TF PF06529 Family 14 61 299.60 62 71.45 Changed Vertebrate interleukin-3 regulated transcription factor
VESA1_N PF12785 Family 40 151 278.40 31 34.21 Changed Variant erythrocyte surface antigen-1
Vesiculo_matrix PF06326 Family 2 6 202.00 15 88.60 Changed Vesiculovirus matrix protein
Vezatin PF12632 Family 30 340 256.80 27 38.04 Changed Mysoin-binding motif of peroxisomes
VF530 PF09905 Family 130 341 62.70 59 65.23 Changed DNA-binding protein VF530
Vfa1 PF08432 Family 92 263 169.00 36 88.28 Changed AAA-ATPase Vps4-associated protein 1
VGCC_alpha2 PF08473 Family 16 528 344.50 27 36.53 Changed Neuronal voltage-dependent calcium channel alpha 2acd
VGCC_beta4Aa_N PF12052 Domain 15 448 41.80 73 8.07 Changed Voltage gated calcium channel subunit beta domain 4Aa N terminal
VGLL4 PF15245 Family 15 134 187.90 46 67.50 Changed Transcription cofactor vestigial-like protein 4
VGPC1_C PF16799 Family 7 49 45.70 73 17.05 Changed C-terminal membrane-localisation domain of ion-channel, VCN1
Vg_Tdu PF07545 Family 18 241 30.40 73 10.97 Changed Vestigial/Tondu family
VHL PF01847 Domain 11 250 72.90 27 21.37 Changed VHL beta domain
VHL_C PF17211 Domain 9 71 54.40 60 30.93 New VHL box domain
VHP PF02209 Domain 238 1244 35.90 47 3.98 Changed Villin headpiece domain
Vhr1 PF04001 Family 21 47 90.30 64 15.22 Changed Transcription factor Vhr1
VHS PF00790 Domain 15 2861 132.90 27 24.07 Changed VHS domain
Vicilin_N PF04702 Family 4 14 129.50 29 28.94 Changed Vicilin N terminal region
VID27 PF08553 Family 56 554 524.70 30 86.88 Changed VID27 cytoplasmic protein
Vif PF00559 Family 2 2 192.00 31 94.35 Changed Retroviral Vif (Viral infectivity) protein
VIGSSK PF14773 Family 44 238 59.50 42 5.73 Changed Helicase-associated putative binding domain, C-terminal
Vinculin PF01044 Family 10 1466 349.80 16 85.01 Changed Vinculin family
Vint PF14623 Domain 38 135 162.70 37 22.88 Changed Hint-domain
Vip3A_N PF12495 Family 12 0 0.00 0 0.00 Changed Vegetative insecticide protein 3A N terminal
VipB PF05943 Family 112 559 402.40 43 80.17 Changed Type VI secretion protein, EvpB/VC_A0108, tail sheath
Viral_Beta_CD PF04530 Family 3 3 119.30 32 71.89 Changed Viral Beta C/D like family
Viral_coat PF00729 Domain 10 14 200.90 24 63.61 Changed Viral coat protein (S domain)
Viral_cys_rich PF08008 Domain 3 4 80.00 39 44.26 Changed Viral cysteine rich
Viral_DNA_bi PF02236 Domain 3 4 76.50 24 17.69 Changed Viral DNA-binding protein, all alpha domain
Viral_DNA_bp PF00747 Family 8 15 1115.50 30 95.87 Changed ssDNA binding protein
Viral_DNA_Zn_bi PF03728 Domain 8 8 100.00 22 46.24 Changed Viral DNA-binding protein, zinc binding domain
Viral_env_E26 PF11050 Family 1 1 225.00 100 100.00 Changed Virus envelope protein E26
Viral_helicase1 PF01443 Family 72 194 187.90 14 16.33 Changed Viral (Superfamily 1) RNA helicase
Viral_Hsp90 PF03225 Family 17 3 514.30 15 97.04 Changed Viral heat shock protein Hsp90 homologue
Viral_NABP PF05515 Family 2 3 140.70 28 95.91 Changed Viral nucleic acid binding
Viral_P18 PF04521 Family 2 3 118.70 26 78.94 Changed ssRNA positive strand viral 18kD cysteine rich protein
Viral_protease PF08715 Family 3 13 291.00 24 6.58 Changed Papain like viral protease
Viral_Rep PF02407 Family 4 46 83.30 28 27.10 Changed Putative viral replication protein
VirArc_Nuclease PF12187 Domain 3 5 151.20 20 60.24 Changed Viral/Archaeal nuclease
VirB3 PF05101 Family 69 464 80.70 23 66.44 Changed Type IV secretory pathway, VirB3-like protein
VirB8 PF04335 Domain 57 589 204.00 21 75.60 Changed VirB8 protein
VirC1 PF07015 Family 4 125 211.00 24 91.27 Changed VirC1 protein
VirC2 PF07181 Family 3 7 175.60 35 97.46 Changed VirC2 protein
VirD1 PF07328 Family 3 6 126.00 40 84.09 Changed T-DNA border endonuclease VirD1
VirDNA-topo-I_N PF09266 Domain 10 12 57.20 52 17.96 Changed Viral DNA topoisomerase I, N-terminal
VirE PF05272 Domain 6 519 188.80 26 33.48 Changed Virulence-associated protein E
VirE1 PF12189 Domain 3 3 63.00 72 98.95 Changed Single-strand DNA-binding protein
VirE2 PF07229 Family 2 3 555.70 76 100.00 Changed VirE2
VirE3 PF06661 Family 2 6 240.50 42 49.22 Changed VirE3
VirE_N PF08800 Domain 73 188 127.50 23 22.05 Changed VirE N-terminal domain
VirionAssem_T7 PF11653 Family 1 1 99.00 100 100.00 Changed Bacteriophage T7 virion assembly protein
VirJ PF06057 Family 10 149 179.70 32 53.31 Changed Bacterial virulence protein (VirJ)
VirK PF06903 Family 14 29 96.00 31 66.82 Changed VirK protein
Virulence_fact PF13769 Family 41 171 83.00 38 32.69 Changed Virulence factor
Virulence_RhuM PF13310 Family 163 1019 175.20 36 61.56 Changed Virulence protein RhuM family
Virul_Fac PF10139 Family 18 124 465.20 23 91.10 Changed Putative bacterial virulence factor
Virul_fac_BrkB PF03631 Family 110 3154 251.80 20 75.12 Changed Virulence factor BrkB
Vir_act_alpha_C PF10400 Family 221 832 83.00 19 44.84 Changed Virulence activator alpha C-term
VIR_N PF15912 Family 9 162 217.00 38 12.05 Changed Virilizer, N-terminal
VIT PF08487 Family 357 1367 109.50 27 12.33 Changed Vault protein inter-alpha-trypsin domain
VIT1 PF01988 Family 554 2561 165.20 27 74.72 Changed VIT family
VitD-bind_III PF09164 Domain 11 55 64.80 63 13.89 Changed Vitamin D binding protein, domain III
Vitelline_membr PF10542 Domain 7 65 36.20 68 25.50 Changed Vitelline membrane cysteine-rich region
Vitellogenin_N PF01347 Family 43 803 442.10 17 27.55 Changed Lipoprotein amino terminal region
VitK2_biosynth PF02621 Domain 86 803 244.80 24 90.18 Changed Menaquinone biosynthesis
VIT_2 PF13757 Domain 7 123 75.60 54 7.50 Changed Vault protein inter-alpha-trypsin domain
VKG_Carbox PF05090 Family 59 425 326.80 20 68.13 Changed Vitamin K-dependent gamma-carboxylase
VKOR PF07884 Domain 293 1108 129.80 22 49.98 Changed Vitamin K epoxide reductase family
VlpA_repeat PF04649 Repeat 2 9 13.00 98 30.47 Changed Mycoplasma hyorhinis VlpA repeat
VLPT PF07122 Repeat 2 3 30.00 74 45.45 Changed Variable length PCR target protein (VLPT)
Vma12 PF11712 Family 100 507 135.30 22 52.37 Changed Endoplasmic reticulum-based factor for assembly of V-ATPase
VMA21 PF09446 Domain 62 518 60.00 33 46.18 Changed VMA21-like domain
Vmethyltransf PF01660 Family 122 52 335.50 15 19.68 Changed Viral methyltransferase
Vmethyltransf_C PF08456 Family 3 3 220.30 23 12.44 Changed Viral methyltransferase C-terminal
VMR2 PF17055 Family 1 1 235.00 100 100.00 Changed Viral matrix protein M2
vMSA PF00695 Family 1 2 243.50 35 66.71 Changed Major surface antigen from hepadnavirus
Voldacs PF03517 Family 41 629 128.90 24 51.48 Changed Regulator of volume decrease after cellular swelling
Voltage_CLC PF00654 Family 120 5783 342.10 24 54.63 Changed Voltage gated chloride channel
VOMI PF03762 Family 44 132 148.60 39 54.58 Changed Vitelline membrane outer layer protein I (VOMI)
VP40 PF07447 Family 2 3 277.00 37 86.74 Changed Matrix protein VP40
VP4_2 PF08935 Domain 2 6 72.00 35 3.03 Changed Viral protein VP4 subunit
VP4_haemagglut PF00426 Family 2 3 690.00 20 88.35 Changed Outer Capsid protein VP4 (Hemagglutinin)
VP7 PF00434 Family 2 2 324.00 35 98.48 Changed Glycoprotein VP7
VP9 PF09625 Domain 5 7 78.70 33 17.76 Changed VP9 protein
VPEP PF07589 Motif 159 1556 25.40 45 9.91 Changed PEP-CTERM motif
VPR PF00522 Family 12 3 89.70 29 90.88 Changed VPR/VPX protein
VPS11_C PF12451 Family 102 451 44.70 35 4.57 Changed Vacuolar protein sorting protein 11 C terminal
VPS13 PF16908 Family 240 1333 216.40 22 7.34 Changed Vacuolar sorting-associated protein 13, N-terminal
VPS13_C PF16909 Family 102 1387 163.40 24 5.24 Changed Vacuolar-sorting-associated 13 protein C-terminal
VPS13_mid_rpt PF16910 Repeat 145 1200 211.40 21 8.48 Changed Repeating coiled region of VPS13
Vps16_C PF04840 Family 4 785 253.40 26 37.16 Changed Vps16, C-terminal region
Vps16_N PF04841 Family 5 683 335.90 29 46.35 Changed Vps16, N-terminal region
Vps23_core PF09454 Domain 121 589 63.00 36 14.14 Changed Vps23 core domain
Vps26 PF03643 Family 8 1078 250.60 41 79.16 Changed Vacuolar protein sorting-associated protein 26
VPS28 PF03997 Family 112 583 180.00 41 75.77 Changed VPS28 protein
Vps35 PF03635 Family 123 875 620.90 34 86.51 Changed Vacuolar protein sorting-associated protein 35
Vps36-NZF-N PF16988 Domain 31 197 65.50 44 10.59 Changed Vacuolar protein sorting 36 NZF-N zinc-finger domain
Vps36_ESCRT-II PF11605 Family 20 451 87.10 34 17.12 Changed Vacuolar protein sorting protein 36 Vps36
Vps39_1 PF10366 Domain 21 724 105.40 31 11.14 Changed Vacuolar sorting protein 39 domain 1
Vps39_2 PF10367 Domain 20 1057 104.30 23 10.81 Changed Vacuolar sorting protein 39 domain 2
Vps4_C PF09336 Domain 147 2636 53.10 27 9.03 Changed Vps4 C terminal oligomerisation domain
Vps5 PF09325 Domain 20 1592 206.30 20 41.13 Changed Vps5 C terminal like
Vps51 PF08700 Family 50 1633 84.00 20 11.90 Changed Vps51/Vps67
Vps52 PF04129 Family 5 829 370.80 24 69.98 Changed Vps52 / Sac2 family
VPS53_C PF16854 Domain 16 37 176.40 28 22.77 Changed Vacuolar protein sorting-associated protein 53 C-terminus
Vps53_N PF04100 Family 6 713 332.50 32 46.49 Changed Vps53-like, N-terminal
Vps54 PF07928 Family 121 598 128.10 36 12.83 Changed Vps54-like protein
Vps54_N PF10475 Family 10 567 219.90 21 24.54 Changed Vacuolar-sorting protein 54, of GARP complex
Vps55 PF04133 Family 125 639 114.00 37 84.25 Changed Vacuolar protein sorting 55
Vps8 PF12816 Domain 162 563 186.70 32 13.02 Changed Golgi CORVET complex core vacuolar protein 8
VPS9 PF02204 Family 45 2467 105.40 25 12.55 Changed Vacuolar sorting protein 9 (VPS9) domain
Vpu PF00558 Domain 16 3 80.30 20 72.81 Changed Vpu protein
VP_N-CPKC PF11475 Family 1 1 32.00 100 1.40 Changed Virion protein N terminal domain
VQ PF05678 Motif 119 1677 27.20 39 12.34 Changed VQ motif
VRP1 PF03538 Family 6 78 261.00 19 12.41 Changed Salmonella virulence plasmid 28.1kDa A protein
VRP3 PF03536 Family 5 10 215.10 41 70.00 Changed Salmonella virulence-associated 28kDa protein
VRR_NUC PF08774 Domain 30 867 109.40 24 17.16 Changed VRR-NUC domain
VSG_B PF13206 Domain 78 878 256.40 15 73.19 Changed Trypanosomal VSG domain
VSP PF03302 Family 6 1462 175.30 19 56.50 Changed Giardia variant-specific surface protein
Vsr PF03852 Family 4 571 71.10 41 46.27 Changed DNA mismatch endonuclease Vsr
Vta1 PF04652 Family 156 1011 138.40 29 16.73 Changed Vta1 like
VTC PF09359 Domain 43 1151 240.10 28 41.58 Changed VTC domain
Vut_1 PF02592 Family 404 1266 154.00 26 69.61 Changed Putative vitamin uptake transporter
VWA PF00092 Domain 132 13881 171.20 18 28.35 Changed von Willebrand factor type A domain
vWA-TerF-like PF10138 Domain 22 322 187.50 30 52.38 Changed vWA found in TerF C terminus
Vwaint PF14624 Domain 66 445 76.20 33 11.57 Changed VWA / Hh protein intein-like
VWA_2 PF13519 Domain 215 4316 112.20 20 17.98 Changed von Willebrand factor type A domain
VWA_3 PF13768 Domain 12 2095 152.90 21 19.53 Changed von Willebrand factor type A domain
VWA_CoxE PF05762 Family 15 1409 183.90 21 42.02 Changed VWA domain containing CoxE-like protein
VWA_N PF08399 Family 53 637 113.40 33 11.34 Changed VWA N-terminal
VWA_N2 PF16164 Family 6 44 76.00 69 2.97 Changed VWA N-terminal
VWC PF00093 Family 19 4436 58.70 33 12.20 Changed von Willebrand factor type C domain
VWD PF00094 Family 41 4726 148.40 22 18.58 Changed von Willebrand factor type D domain
vWF_A PF12450 Family 112 288 92.80 42 15.45 Changed von Willebrand factor
V_ATPase_I PF01496 Family 267 2789 466.10 24 82.79 Changed V-type ATPase 116kDa subunit family
V_cholerae_RfbT PF05575 Family 2 2 149.00 1 99.33 Changed Vibrio cholerae RfbT protein
New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z