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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
V-ATPase_C PF03223 Family 136 887 336.30 35 93.59 Changed V-ATPase subunit C
V-ATPase_G PF03179 Family 28 993 100.20 33 77.54 Changed Vacuolar (H+)-ATPase G subunit
V-ATPase_G_2 PF16999 Domain 14 105 101.70 29 94.37 New Vacuolar (H+)-ATPase G subunit
V-ATPase_H_C PF11698 Family 137 737 115.80 42 25.97 Changed V-ATPase subunit H
V-ATPase_H_N PF03224 Family 34 815 287.10 24 64.82 Changed V-ATPase subunit H
V-set PF07686 Domain 70 23976 103.40 18 37.99 Changed Immunoglobulin V-set domain
V-set_2 PF15910 Domain 8 146 114.50 41 54.82 New ICOS V-set domain
V-set_CD47 PF08204 Domain 12 163 121.70 40 41.67 Changed CD47 immunoglobulin-like domain
V-SNARE PF05008 Family 79 915 77.60 27 30.82 Changed Vesicle transport v-SNARE protein N-terminus
V-SNARE_C PF12352 Domain 20 2370 65.20 24 27.71 Changed Snare region anchored in the vesicle membrane C-terminus
v110 PF01639 Family 4 107 100.10 41 77.50 Changed Viral family 110
V1R PF03402 Family 2 3587 236.70 33 87.37 Changed Vomeronasal organ pheromone receptor family, V1R
V4R PF02830 Family 30 1166 62.00 28 16.66 Changed V4R domain
Vac14_Fab1_bd PF12755 Domain 35 775 94.10 47 10.73 Changed Vacuolar 14 Fab1-binding region
Vac14_Fig4_bd PF11916 Domain 86 772 160.10 48 22.23 Changed Vacuolar protein 14 C-terminal Fig4p binding
Vac7 PF12751 Family 36 315 276.20 26 43.68 Changed Vacuolar segregation subunit 7
VacA PF02691 Family 2 1504 335.00 47 80.94 Changed Vacuolating cyotoxin
VacA2 PF03077 Family 15 2805 59.70 42 7.79 Changed Putative vacuolating cytotoxin
Vac_Fusion PF02346 Family 7 356 43.70 50 25.92 Changed Chordopoxvirus multifunctional envelope protein A27
Vac_ImportDeg PF09783 Family 87 635 168.80 39 50.41 Changed Vacuolar import and degradation protein
VAD1-2 PF15310 Family 12 40 212.10 47 54.24 Changed Vitamin A-deficiency (VAD) rat model signalling
Val_tRNA-synt_C PF10458 Domain 25 18523 65.70 42 7.32 Changed Valyl tRNA synthetase tRNA binding arm
Vanabin-2 PF11437 Family 8 11 92.80 35 52.82 Changed Vanadium-binding protein 2
VanW PF04294 Family 481 3117 129.30 36 31.15 Changed VanW like protein
VanY PF02557 Family 48 6592 131.90 33 50.32 Changed D-alanyl-D-alanine carboxypeptidase
VanZ PF04892 Family 424 10981 131.70 19 63.53 Changed VanZ like family
VapB_antitoxin PF09957 Domain 30 12562 46.70 41 62.63 Changed Bacterial antitoxin of type II TA system, VapB
VAR1 PF05316 Family 5 70 302.70 35 85.50 Changed Mitochondrial ribosomal protein (VAR1)
VARLMGL PF14383 Domain 29 662 28.30 42 3.55 Changed DUF761-associated sequence motif
Varsurf_PPLC PF03490 Family 3 89 45.70 33 11.79 Changed Variant-surface-glycoprotein phospholipase C
Vasculin PF15337 Family 10 179 94.20 68 20.94 Changed Vascular protein family Vasculin-like 1
VasI PF11319 Family 24 2090 180.70 57 77.74 Changed Type VI secretion system VasI, EvfG, VC_A0118
VasL PF12486 Family 19 3369 136.80 47 33.65 Changed Type VI secretion system, EvfB, or VasL
Vasohibin PF14822 Family 16 249 197.10 48 64.25 Changed Vasohibin
VASP_tetra PF08776 Domain 25 367 36.30 56 7.45 Changed VASP tetramerisation domain
vATP-synt_AC39 PF01992 Family 365 3292 306.30 23 94.54 Changed ATP synthase (C/AC39) subunit
vATP-synt_E PF01991 Family 12 2176 181.00 23 88.84 Changed ATP synthase (E/31 kDa) subunit
Vault PF01505 Repeat 167 868 42.80 37 20.59 Changed Major Vault Protein repeat
VBS PF08913 Domain 6 393 116.30 42 7.14 Changed Vinculin Binding Site
VCBS PF13517 Repeat 782 13922 66.10 25 13.62 Changed Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
VCX_VCY PF15231 Family 5 91 96.60 60 103.19 Changed Variable charge X/Y family
VD10_N PF08476 Family 7 59 42.80 61 17.67 Changed Viral D10 N-terminal
VDE PF07137 Domain 2 158 177.60 56 48.51 Changed VDE lipocalin domain
VEFS-Box PF09733 Family 30 554 113.60 33 21.17 Changed VEFS-Box of polycomb protein
VEG PF06257 Family 124 7186 73.50 63 84.58 Changed Biofilm formation stimulator VEG
VEGF_C PF14554 Domain 4 190 55.30 74 26.00 Changed VEGF heparin-binding domain
VEK-30 PF12107 Domain 8 191 16.50 72 9.68 Changed Plasminogen (Pg) ligand in fibrinolytic pathway
Vel1p PF10339 Family 5 46 192.50 86 98.03 Changed Yeast-specific zinc responsive
Velvet PF11754 Family 116 981 202.70 30 49.42 Changed Velvet factor
VERL PF11386 Family 5 195 76.70 70 38.94 Changed Vitelline envelope receptor for lysin
Vert_HS_TF PF06546 Family 15 326 213.30 26 51.96 Changed Vertebrate heat shock transcription factor
Vert_IL3-reg_TF PF06529 Family 14 74 294.20 64 72.11 Changed Vertebrate interleukin-3 regulated transcription factor
VESA1_N PF12785 Family 40 248 243.40 30 38.60 Changed Variant erythrocyte surface antigen-1
Vesiculo_matrix PF06326 Family 2 159 178.10 37 83.48 Changed Vesiculovirus matrix protein
Vezatin PF12632 Family 30 338 257.70 26 37.56 Changed Mysoin-binding motif of peroxisomes
Vfa1 PF08432 Family 92 271 170.00 34 88.90 Changed AAA-ATPase Vps4-associated protein 1
VGCC_alpha2 PF08473 Family 20 254 89.50 46 8.88 Changed Neuronal voltage-dependent calcium channel alpha 2acd
VGCC_beta4Aa_N PF12052 Domain 15 555 41.60 75 8.37 Changed Voltage gated calcium channel subunit beta domain 4Aa N terminal
VGLL4 PF15245 Family 15 158 184.80 50 69.18 Changed Transcription cofactor vestigial-like protein 4
VGPC1_C PF16799 Family 7 59 46.00 73 17.57 New C-terminal membrane-localisation domain of ion-channel, VCN1
Vg_Tdu PF07545 Family 18 264 30.50 71 11.13 Changed Vestigial/Tondu family
VHL PF01847 Domain 12 298 106.10 26 29.62 Changed von Hippel-Lindau disease tumour suppressor protein
VHP PF02209 Domain 242 1349 35.90 47 4.07 Changed Villin headpiece domain
Vhr1 PF04001 Family 21 80 89.80 69 15.61 Changed Transcription factor Vhr1
VHS PF00790 Domain 15 2956 132.40 28 24.33 Changed VHS domain
Vicilin_N PF04702 Family 4 35 123.80 32 28.38 Changed Vicilin N terminal region
VID27 PF08553 Family 58 556 513.90 28 86.72 Changed VID27 cytoplasmic protein
Vif PF00559 Family 2 10193 186.40 79 99.51 Changed Retroviral Vif (Viral infectivity) protein
VIGSSK PF14773 Family 44 230 59.10 42 5.86 Changed Helicase-associated putative binding domain, C-terminal
Vinculin PF01044 Family 10 1790 336.50 15 87.09 Changed Vinculin family
Vint PF14623 Domain 39 136 162.50 40 23.24 Changed Hint-domain
Vip3A_N PF12495 Family 12 108 170.20 97 27.39 Changed Vegetative insecticide protein 3A N terminal
VipB PF05943 Family 114 7051 392.00 50 84.69 Changed Type VI secretion protein, EvpB/VC_A0108, tail sheath
Viral_Beta_CD PF04530 Family 3 29 117.00 41 71.54 Changed Viral Beta C/D like family
Viral_coat PF00729 Domain 10 672 196.00 28 66.53 Changed Viral coat protein (S domain)
Viral_cys_rich PF08008 Domain 3 41 80.80 34 52.40 Changed Viral cysteine rich
Viral_DNA_bi PF02236 Domain 3 220 78.90 47 16.18 Changed Viral DNA-binding protein, all alpha domain
Viral_DNA_bp PF00747 Family 8 251 945.00 31 95.49 Changed ssDNA binding protein
Viral_DNA_Zn_bi PF03728 Domain 8 438 100.20 37 40.87 Changed Viral DNA-binding protein, zinc binding domain
Viral_env_E26 PF11050 Family 1 28 195.80 51 97.68 Changed Virus envelope protein E26
Viral_helicase1 PF01443 Family 72 4512 223.50 18 13.53 Changed Viral (Superfamily 1) RNA helicase
Viral_Hsp90 PF03225 Family 17 209 443.70 29 95.13 Changed Viral heat shock protein Hsp90 homologue
Viral_NABP PF05515 Family 2 342 102.90 43 90.39 Changed Viral nucleic acid binding
Viral_P18 PF04521 Family 2 24 117.60 45 72.22 Changed ssRNA positive strand viral 18kD cysteine rich protein
Viral_protease PF08715 Family 3 1290 293.60 27 6.82 Changed Papain like viral protease
Viral_Rep PF02407 Family 4 1936 80.10 42 29.44 Changed Putative viral replication protein
VirArc_Nuclease PF12187 Domain 3 16 175.40 42 78.91 Changed Viral/Archaeal nuclease
VirB3 PF05101 Family 73 2649 81.50 22 34.39 Changed Type IV secretory pathway, VirB3-like protein
VirB8 PF04335 Domain 59 4088 203.90 21 83.76 Changed VirB8 protein
VirC1 PF07015 Family 4 123 212.30 26 91.97 Changed VirC1 protein
VirC2 PF07181 Family 3 19 172.90 53 98.21 Changed VirC2 protein
VirD1 PF07328 Family 3 15 136.10 63 92.48 Changed T-DNA border endonuclease VirD1
VirDNA-topo-I_N PF09266 Domain 10 81 57.20 65 18.26 Changed Viral DNA topoisomerase I, N-terminal
VirE PF05272 Domain 6 5511 193.60 50 28.22 Changed Virulence-associated protein E
VirE1 PF12189 Domain 3 9 62.60 70 97.24 Changed Single-strand DNA-binding protein
VirE2 PF07229 Family 2 10 540.20 71 99.26 Changed VirE2
VirE3 PF06661 Family 2 18 262.10 51 51.36 Changed VirE3
VirE_N PF08800 Domain 73 1104 128.10 25 22.90 Changed VirE N-terminal domain
VirionAssem_T7 PF11653 Family 5 62 91.60 50 99.23 Changed Bacteriophage T7 virion assembly protein
VirJ PF06057 Family 10 1027 186.60 46 45.33 Changed Bacterial virulence protein (VirJ)
VirK PF06903 Family 14 262 95.10 37 68.23 Changed VirK protein
Virulence_fact PF13769 Family 44 4679 80.80 81 22.34 Changed Virulence factor
Virulence_RhuM PF13310 Family 166 3303 193.20 41 66.72 Changed Virulence protein RhuM family
Virul_Fac PF10139 Family 18 2374 376.10 29 97.08 Changed Putative bacterial virulence factor
Virul_fac_BrkB PF03631 Family 111 25682 252.30 25 75.02 Changed Virulence factor BrkB
Vir_act_alpha_C PF10400 Family 223 5119 83.40 30 45.09 Changed Virulence activator alpha C-term
VIR_N PF15912 Family 9 162 230.30 39 13.62 New Virilizer, N-terminal
VIT PF08487 Family 363 1707 109.40 27 12.64 Changed Vault protein inter-alpha-trypsin domain
VIT1 PF01988 Family 562 5565 185.00 31 78.80 Changed VIT family
VitD-bind_III PF09164 Domain 11 64 64.40 61 14.11 Changed Vitamin D binding protein, domain III
Vitelline_membr PF10542 Domain 9 98 36.30 72 26.26 Changed Vitelline membrane cysteine-rich region
Vitellogenin_N PF01347 Family 43 1446 425.50 16 31.46 Changed Lipoprotein amino terminal region
VitK2_biosynth PF02621 Domain 87 2889 209.00 21 91.97 Changed Menaquinone biosynthesis
VIT_2 PF13757 Domain 8 139 75.30 51 7.66 Changed Vault protein inter-alpha-trypsin domain
VKG_Carbox PF05090 Family 60 830 348.60 21 74.24 Changed Vitamin K-dependent gamma-carboxylase
VKOR PF07884 Domain 293 3381 132.60 45 53.13 Changed Vitamin K epoxide reductase family
VlpA_repeat PF04649 Repeat 2 64 13.00 98 27.33 Changed Mycoplasma hyorhinis VlpA repeat
VLPT PF07122 Repeat 2 117 30.00 76 52.87 Changed Variable length PCR target protein (VLPT)
Vma12 PF11712 Family 102 537 136.20 22 53.55 Changed Endoplasmic reticulum-based factor for assembly of V-ATPase
VMA21 PF09446 Domain 63 514 59.80 34 49.39 Changed VMA21-like domain
Vmethyltransf PF01660 Family 122 2797 304.10 18 23.32 Changed Viral methyltransferase
Vmethyltransf_C PF08456 Family 3 40 215.10 44 13.84 Changed Viral methyltransferase C-terminal
VMR2 PF17055 Family 1 3 229.00 47 97.72 New Viral matrix protein M2
vMSA PF00695 Family 1 40272 182.10 60 94.14 Changed Major surface antigen from hepadnavirus
Voldacs PF03517 Family 42 666 131.70 25 52.31 Changed Regulator of volume decrease after cellular swelling
Voltage_CLC PF00654 Family 120 27067 333.60 25 69.11 Changed Voltage gated chloride channel
VOMI PF03762 Family 47 171 146.90 39 55.07 Changed Vitelline membrane outer layer protein I (VOMI)
VP40 PF07447 Family 2 47 274.40 60 86.96 Changed Matrix protein VP40
VP4_2 PF08935 Domain 2 960 78.80 67 4.63 Changed Viral protein VP4 subunit
VP4_haemagglut PF00426 Family 9 5753 352.90 69 99.92 Changed Outer Capsid protein VP4 (Hemagglutinin)
VP7 PF00434 Family 2 7017 268.70 74 99.45 Changed Glycoprotein VP7
VP9 PF09625 Domain 6 25 76.90 42 19.37 Changed VP9 protein
VPEP PF07589 Motif 160 2458 25.30 44 10.19 Changed PEP-CTERM motif
VPR PF00522 Family 12 8242 88.30 79 93.77 Changed VPR/VPX protein
VPS11_C PF12451 Family 102 471 46.90 35 4.80 Changed Vacuolar protein sorting protein 11 C terminal
VPS13 PF16908 Family 249 1369 214.40 21 7.30 New Vacuolar sorting-associated protein 13, N-terminal
VPS13_C PF16909 Family 102 1459 165.10 26 5.24 New Vacuolar-sorting-associated 13 protein C-terminal
VPS13_mid_rpt PF16910 Family 149 1247 213.40 22 8.97 New Repeating coiled region of VPS13
Vps16_C PF04840 Family 4 663 275.10 29 37.28 Changed Vps16, C-terminal region
Vps16_N PF04841 Family 5 695 333.90 27 46.35 Changed Vps16, N-terminal region
Vps23_core PF09454 Domain 124 670 62.20 42 14.24 Changed Vps23 core domain
Vps26 PF03643 Family 8 1209 248.00 42 80.15 Changed Vacuolar protein sorting-associated protein 26
VPS28 PF03997 Family 114 639 174.70 39 74.35 Changed VPS28 protein
Vps35 PF03635 Family 126 960 628.40 32 86.90 Changed Vacuolar protein sorting-associated protein 35
Vps36-NZF-N PF16988 Domain 31 209 65.20 42 10.82 New Vacuolar protein sorting 36 NZF-N zinc-finger domain
Vps36_ESCRT-II PF11605 Family 21 481 86.70 33 17.12 Changed Vacuolar protein sorting protein 36 Vps36
Vps39_1 PF10366 Domain 21 706 105.40 33 11.17 Changed Vacuolar sorting protein 39 domain 1
Vps39_2 PF10367 Domain 21 1151 103.90 21 10.90 Changed Vacuolar sorting protein 39 domain 2
Vps4_C PF09336 Domain 151 2753 53.30 27 9.24 Changed Vps4 C terminal oligomerisation domain
Vps5 PF09325 Domain 20 1649 207.50 21 42.22 Changed Vps5 C terminal like
Vps51 PF08700 Family 52 1599 83.80 20 12.01 Changed Vps51/Vps67
Vps52 PF04129 Family 5 848 376.50 24 70.71 Changed Vps52 / Sac2 family
VPS53_C PF16854 Domain 16 54 186.70 36 23.60 New Vacuolar protein sorting-associated protein 53 C-terminus
Vps53_N PF04100 Family 6 741 337.40 30 46.68 Changed Vps53-like, N-terminal
Vps54 PF07928 Family 124 629 127.20 38 12.80 Changed Vps54-like protein
Vps55 PF04133 Family 125 678 114.50 37 85.52 Changed Vacuolar protein sorting 55
Vps8 PF12816 Domain 165 577 188.20 31 13.41 Changed Golgi CORVET complex core vacuolar protein 8
VPS9 PF02204 Family 46 2721 105.80 25 12.72 Changed Vacuolar sorting protein 9 (VPS9) domain
Vpu PF00558 Domain 16 9232 73.90 64 97.47 Changed Vpu protein
VP_N-CPKC PF11475 Family 1 51 31.90 92 1.60 Changed Virion protein N terminal domain
VQ PF05678 Motif 119 1210 27.20 39 12.36 Changed VQ motif
VRP1 PF03538 Family 6 771 211.20 24 25.95 Changed Salmonella virulence plasmid 28.1kDa A protein
VRP3 PF03536 Family 5 287 225.40 73 96.42 Changed Salmonella virulence-associated 28kDa protein
VRR_NUC PF08774 Domain 32 6876 91.40 33 28.08 Changed VRR-NUC domain
VSG_B PF13206 Domain 78 2367 291.50 15 74.38 Changed Trypanosomal VSG domain
VSP PF03302 Family 6 2448 177.60 19 59.46 Changed Giardia variant-specific surface protein
Vsr PF03852 Family 4 4343 72.80 62 47.14 Changed DNA mismatch endonuclease Vsr
Vta1 PF04652 Family 158 901 138.00 28 20.69 Changed Vta1 like
VTC PF09359 Domain 44 2285 228.30 24 55.13 Changed VTC domain
Vut_1 PF02592 Family 410 12211 153.20 42 70.31 Changed Putative vitamin uptake transporter
VWA PF00092 Domain 132 20053 166.00 18 31.64 Changed von Willebrand factor type A domain
vWA-TerF-like PF10138 Domain 24 709 188.40 35 50.79 Changed vWA found in TerF C terminus
Vwaint PF14624 Domain 67 367 75.30 33 11.60 Changed VWA / Hh protein intein-like
VWA_2 PF13519 Domain 106 27850 200.20 17 33.14 Changed von Willebrand factor type A domain
VWA_3 PF13768 Domain 12 2085 152.60 23 18.96 Changed von Willebrand factor type A domain
VWA_CoxE PF05762 Family 15 12737 187.60 27 43.55 Changed VWA domain containing CoxE-like protein
VWA_N PF08399 Family 54 684 112.30 35 11.44 Changed VWA N-terminal
VWA_N2 PF16164 Family 6 655 38.90 76 6.67 New VWA N-terminal
VWC PF00093 Family 19 5144 58.90 33 12.10 Changed von Willebrand factor type C domain
VWD PF00094 Family 42 5960 145.20 21 18.76 Changed von Willebrand factor type D domain
vWF_A PF12450 Family 114 2070 99.20 60 16.90 Changed von Willebrand factor
V_ATPase_I PF01496 Family 271 6793 340.00 16 78.06 Changed V-type ATPase 116kDa subunit family
V_cholerae_RfbT PF05575 Family 2 120 261.50 99 99.68 Changed Vibrio cholerae RfbT protein
New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z