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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
Y1_Tnp PF01797 Family 178 5614 98.60 26 68.64 Changed Transposase IS200 like
Y2_Tnp PF04986 Family 65 1246 156.80 27 48.81 Changed Putative transposase
YaaC PF14175 Family 27 147 284.50 38 91.65 Changed YaaC-like Protein
YABBY PF04690 Family 6 396 129.80 45 77.58 Changed YABBY protein
YabP PF07873 Family 73 814 66.30 30 70.00 Changed YabP family
YadA_anchor PF03895 Family 110 2384 77.90 30 8.25 Changed YadA-like C-terminal region
YadA_head PF05658 Repeat 239 9521 27.80 37 11.89 Changed Head domain of trimeric autotransporter adhesin
YadA_stalk PF05662 Motif 75 6882 22.40 61 6.44 Changed Coiled stalk of trimeric autotransporter adhesin
Yae1_N PF09811 Family 82 669 38.90 34 17.48 Changed Essential protein Yae1, N terminal
YaeQ PF07152 Family 64 1039 173.00 52 96.12 Changed YaeQ protein
YafO_toxin PF13957 Family 20 200 104.50 53 80.37 Changed Toxin YafO, type II toxin-antitoxin system
YagB_YeeU_YfjZ PF06154 Family 10 822 90.00 81 87.89 Changed YagB/YeeU/YfjZ family
YajC PF02699 Family 176 4454 83.30 32 76.43 Changed Preprotein translocase subunit
YARHG PF13308 Domain 105 463 81.60 28 22.53 Changed YARHG domain
YbaB_DNA_bd PF02575 Family 139 4505 92.10 35 83.07 Changed YbaB/EbfC DNA-binding family
YbaJ PF10757 Family 4 531 120.80 84 98.44 Changed Biofilm formation regulator YbaJ
YbbR PF07949 Family 190 4025 83.70 18 58.23 Changed YbbR-like protein
YbfN PF13982 Family 7 463 88.00 88 81.76 Changed YbfN-like lipoprotein
YbgS PF13985 Family 9 467 123.50 85 98.29 Changed YbgS-like protein
YbgT_YccB PF08173 Family 36 1086 28.00 61 71.26 Changed Membrane bound YbgT-like protein
YbhQ PF11076 Family 3 433 131.30 87 98.04 Changed Putative inner membrane protein YbhQ
YbjM PF11045 Family 6 477 118.90 78 99.49 Changed Putative inner membrane protein of Enterobacteriaceae
YbjN PF10722 Domain 185 1845 127.10 20 69.51 Changed Putative bacterial sensory transduction regulator
YbjQ_1 PF01906 Family 171 2580 98.20 39 85.64 Changed Putative heavy-metal-binding
YcaO PF02624 Family 127 1709 324.50 28 58.87 Changed YcaO-like family
YcbB PF08664 Domain 21 318 134.50 43 44.99 Changed YcbB domain
YccJ PF13993 Family 6 468 68.90 92 92.19 Changed YccJ-like protein
YccV-like PF08755 Domain 64 1071 98.80 44 47.48 Changed Hemimethylated DNA-binding protein YccV like
YceG PF02618 Family 195 4001 281.50 30 77.07 Changed YceG-like family
YceI PF04264 Domain 135 3875 164.90 25 82.66 Changed YceI-like domain
Ycf1 PF05758 Family 44 1439 450.30 52 62.57 Changed Ycf1
Ycf15 PF10705 Family 3 64 72.20 68 98.05 Changed Chloroplast protein precursor Ycf15 putative
Ycf34 PF10718 Family 23 81 75.60 54 91.41 Changed Hypothetical chloroplast protein Ycf34
Ycf4 PF02392 Family 59 709 177.50 64 96.24 Changed Ycf4
Ycf54 PF10674 Family 24 115 90.40 50 67.26 Changed Protein of unknown function (DUF2488)
Ycf66_N PF07444 Family 16 155 82.00 43 29.81 Changed Ycf66 protein N-terminus
Ycf9 PF01737 Family 35 1482 57.60 81 94.87 Changed YCF9
YcfA PF07927 Family 255 2133 54.70 24 71.59 Changed YcfA-like protein
YcgL PF05166 Domain 61 977 71.60 58 75.14 Changed YcgL domain
YcgR PF07317 Domain 7 656 105.70 50 43.27 Changed Flagellar regulator YcgR
YcgR_2 PF12945 Family 119 585 88.40 21 37.67 Changed Flagellar protein YcgR
YchF-GTPase_C PF06071 Domain 44 5012 82.60 63 22.65 Changed Protein of unknown function (DUF933)
YCII PF03795 Domain 26 4283 97.20 23 86.30 Changed YCII-related domain
YcxB PF14317 Family 258 600 62.50 16 34.41 Changed YcxB-like protein
Ydc2-catalyt PF09159 Domain 53 128 264.70 23 72.90 Changed Mitochondrial resolvase Ydc2 / RNA splicing MRS1
YdfA_immunity PF12127 Family 22 608 312.90 69 96.50 Changed SigmaW regulon antibacterial
YdfZ PF14001 Family 11 477 63.40 78 94.39 Changed YdfZ protein
ydhR PF08803 Family 23 612 96.50 66 94.04 Changed Putative mono-oxygenase ydhR
YdjC PF04794 Family 114 1651 240.90 32 92.26 Changed YdjC-like protein
YdjO PF14169 Family 15 173 59.30 52 59.05 Changed Cold-inducible protein YdjO
Yeast-kill-tox PF09207 Domain 2 2 86.50 88 69.48 Changed Yeast killer toxin
Yeast_MT PF11403 Family 2 7 40.00 100 65.57 Changed Yeast metallothionein
YEATS PF03366 Family 63 798 83.10 35 19.08 Changed YEATS family
YebF PF13995 Family 23 531 88.40 73 73.86 Changed YebF-like protein
YebG PF07130 Family 32 761 74.10 64 75.84 Changed YebG protein
YebO PF13974 Domain 21 513 79.70 73 86.41 Changed YebO-like protein
YecM PF06185 Family 6 775 181.20 59 95.31 Changed YecM protein
YecR PF13992 Family 19 390 73.10 73 71.33 Changed YecR-like lipoprotein
YedD PF13987 Family 10 460 110.60 86 80.58 Changed YedD-like protein
YejG PF13989 Family 16 534 106.00 82 93.71 Changed YejG-like protein
YesK PF14150 Family 10 127 76.40 57 81.94 Changed YesK-like protein
YfaZ PF07437 Family 3 659 178.50 63 95.94 Changed YfaZ precursor
YfbU PF03887 Domain 4 723 163.40 73 97.45 Changed YfbU domain
YfcL PF08891 Domain 29 716 86.50 67 94.87 Changed YfcL protein
YfdX PF10938 Family 23 564 153.00 55 68.75 Changed YfdX protein
YfhD PF14151 Family 16 145 54.30 55 99.03 Changed YfhD-like protein
YfhE PF14152 Family 13 126 36.60 66 92.22 Changed YfhE-like protein
YfhO PF09586 Family 56 1820 637.40 21 83.13 Changed Bacterial membrane protein YfhO
YfiO PF13525 Domain 30 2784 181.20 26 61.86 Changed Outer membrane lipoprotein
YfkB PF08756 Domain 14 371 153.50 70 40.66 Changed YfkB-like domain
YfkD PF14167 Family 10 138 229.10 72 89.47 Changed YfkD-like protein
YflT PF11181 Family 12 479 95.40 28 57.40 Changed Heat induced stress protein YflT
YfmQ PF10787 Family 7 191 139.80 65 98.44 Changed Uncharacterised protein from bacillus cereus group
YfzA PF14118 Family 4 111 91.00 59 97.31 Changed YfzA-like protein
YgaB PF14182 Family 11 129 78.00 63 90.65 Changed YgaB-like protein
YgbA_NO PF11756 Family 25 846 107.60 52 93.30 Changed Nitrous oxide-stimulated promoter
YgbB PF02542 Family 167 3444 155.90 48 76.19 Changed YgbB family
YGGT PF02325 Family 170 4945 77.70 26 80.00 Changed YGGT family
YhdB PF14148 Family 6 132 69.50 71 93.88 Changed YhdB-like protein
YhfH PF14149 Family 17 140 36.90 66 75.72 Changed YhfH-like protein
YhfT PF10797 Family 13 324 424.10 79 98.09 Changed Protein of unknown function
YhfZ_C PF14503 Family 20 369 210.60 73 75.69 New YhfZ C-terminal domain
YhhN PF07947 Family 119 1531 182.60 31 82.28 Changed YhhN-like protein
YhjQ PF06564 Family 9 638 228.30 57 95.90 Changed YhjQ protein
YHS PF04945 Domain 23 1534 45.40 29 10.53 Changed YHS domain
YHYH PF14240 Family 57 242 161.80 25 17.45 Changed YHYH protein
YhzD PF14120 Family 15 141 61.00 67 97.73 Changed YhzD-like protein
YiaAB PF05360 Domain 19 1736 52.40 37 64.76 Changed yiaA/B two helix domain
YibE_F PF07907 Family 89 1478 239.00 28 70.23 Changed YibE/F-like protein
YicC_N PF03755 Family 185 2490 155.00 32 53.65 Changed YicC-like family, N-terminal region
YidC_periplas PF14849 Domain 388 2338 274.10 26 49.21 New YidC periplasmic domain
YIEGIA PF14045 Family 25 191 277.00 56 96.04 Changed YIEGIA protein
YIF1 PF03878 Family 6 451 221.80 34 73.12 Changed YIF1
YihI PF04220 Family 30 794 164.80 55 94.86 Changed Der GTPase activator (YihI)
YiiD_Cterm PF09500 Domain 47 840 141.30 61 49.49 Changed Putative thioesterase (yiiD_Cterm)
Yip1 PF04893 Domain 208 1661 174.80 14 66.95 Changed Yip1 domain
Yippee-Mis18 PF03226 Family 54 862 97.00 39 59.44 Changed Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
YjbE PF11106 Family 2 379 79.80 92 99.09 Changed Exopolysaccharide production protein YjbE
YjbR PF04237 Family 196 3031 96.50 28 68.23 Changed YjbR
YjcQ PF09639 Domain 8 83 92.60 25 87.98 Changed YjcQ protein
YjcZ PF13990 Family 10 540 258.80 62 90.92 Changed YjcZ-like protein
YjeF_N PF03853 Domain 82 3610 164.50 29 35.13 Changed YjeF-related protein N-terminus
YjfB_motility PF14070 Family 64 334 58.30 30 94.26 Changed Putative motility protein
YjgF_endoribonc PF14588 Domain 2 1260 146.50 44 92.19 New YjgF/chorismate_mutase-like, putative endoribonuclease
YjgP_YjgQ PF03739 Family 131 5380 347.90 20 93.70 Changed Predicted permease YjgP/YjgQ family
YjzC PF14168 Family 20 212 56.70 51 92.41 Changed YjzC-like protein
Ykof PF07615 Family 13 198 78.90 25 77.88 Changed YKOF-related Family
YkuD PF03734 Domain 173 11311 140.70 20 42.83 Changed L,D-transpeptidase catalytic domain
YkuD_2 PF13645 Domain 56 379 172.30 39 70.48 Changed L,D-transpeptidase catalytic domain
YkuI_C PF10388 Domain 14 277 149.80 31 33.45 Changed EAL-domain associated signalling protein domain
YkyA PF10368 Family 17 458 195.40 42 93.56 Changed Putative cell-wall binding lipoprotein
YkyB PF14177 Family 9 140 135.60 65 88.32 Changed YkyB-like protein
YL1 PF05764 Family 37 325 213.70 27 44.43 Changed YL1 nuclear protein
YL1_C PF08265 Domain 51 540 29.80 42 8.37 Changed YL1 nuclear protein C-terminal domain
YlaC PF10777 Domain 8 536 153.20 75 97.48 Changed Inner membrane protein YlaC
YlaH PF14036 Family 23 162 77.20 63 74.91 Changed YlaH-like protein
YlbD_coat PF14071 Family 18 144 127.50 56 91.84 Changed Putative coat protein
YlbE PF14003 Family 14 143 64.70 64 81.46 Changed YlbE-like protein
YliH PF10799 Family 4 440 124.30 86 99.55 Changed Biofilm formation protein (YliH/bssR)
YLP PF02757 Motif 26 674 8.90 65 15.78 Changed YLP motif
YlqD PF11068 Family 29 228 129.00 34 95.09 Changed YlqD protein
YlzJ PF14035 Family 39 213 64.20 40 93.42 Changed YlzJ-like protein
YmaF PF12788 Family 10 130 90.10 43 77.47 Changed YmaF family
YmdB PF13277 Domain 140 1315 250.70 47 94.97 Changed YmdB-like protein
YMF19 PF02326 Family 23 331 79.00 31 61.04 Changed Plant ATP synthase F0
YmgB PF10798 Family 6 700 55.90 43 68.79 Changed Biofilm development protein YmgB/AriR
YmzC PF14157 Family 7 102 58.60 57 69.31 Changed YmzC-like protein
YndJ PF14158 Family 14 139 248.50 55 50.67 Changed YndJ-like protein
YniB PF14002 Family 20 546 162.50 80 91.65 Changed YniB-like protein
YoaP PF14268 Family 37 211 43.80 38 17.89 Changed YoaP-like
YobH PF13996 Family 15 454 69.00 76 88.65 Changed YobH-like protein
YodA PF09223 Domain 33 1239 177.80 56 49.23 Changed YodA lipocalin-like domain
YodL PF14191 Family 50 285 101.40 33 14.67 Changed YodL-like
YojJ PF10372 Family 6 127 68.40 58 33.78 Changed Bacterial membrane-spanning protein N-terminus
YokU PF14122 Family 10 136 83.70 68 95.75 Changed YokU-like protein
YolD PF08863 Domain 39 1100 85.80 23 75.75 Changed YolD-like protein
YonK PF09642 Domain 2 10 60.00 48 94.94 Changed YonK protein
YopD PF05844 Family 8 87 279.90 45 93.75 Changed YopD protein
YopE PF03545 Family 8 184 69.90 55 15.70 Changed Yersinia virulence determinant (YopE)
YopE_N PF09020 Domain 2 31 104.70 97 52.96 Changed YopE, N terminal
YopH_N PF09013 Domain 4 68 114.70 61 40.01 Changed YopH, N-terminal
YopJ PF03421 Family 17 290 171.80 37 54.49 Changed YopJ Serine/Threonine acetyltransferase
YopR_core PF09025 Domain 9 74 140.50 43 81.11 Changed YopR Core
Yopt PF09467 Domain 2 7 70.40 65 95.73 Changed Hypothetical protein Yopt
YopX PF09643 Domain 63 761 122.40 24 92.72 Changed YopX protein
YoqO PF14037 Family 8 164 108.70 49 88.71 Changed YoqO-like protein
YorP PF09629 Domain 2 8 65.40 75 99.43 Changed YorP protein
Yos1 PF08571 Family 20 281 76.20 43 59.59 Changed Yos1-like
YozD PF14162 Family 6 127 56.90 81 96.98 Changed YozD-like protein
YPEB PF14620 Family 62 303 334.50 35 74.40 New YpeB sporulation
YpjP PF14005 Family 15 144 136.90 68 68.73 Changed YpjP-like protein
YpM PF09144 Domain 2 4 116.80 90 77.45 Changed Yersinia pseudotuberculosis mitogen
YppF PF14178 Family 9 125 59.80 62 92.84 Changed YppF-like protein
YppG PF14179 Family 18 134 128.70 55 86.65 Changed YppG-like protein
YpzG PF14139 Family 8 104 49.80 68 98.29 Changed YpzG-like protein
YpzI PF14140 Family 8 121 41.90 80 91.57 Changed YpzI-like protein
Yqai PF09466 Domain 2 32 63.30 35 82.67 Changed Hypothetical protein Yqai
YqaJ PF09588 Domain 97 1553 140.60 24 46.91 Changed YqaJ-like viral recombinase domain
YqbF PF14553 Domain 9 66 40.30 59 71.20 New YqbF, hypothetical protein domain
YqcI_YcgG PF08892 Family 34 324 212.20 33 84.71 Changed YqcI/YcgG family
YqeY PF09424 Domain 42 2465 142.00 36 94.47 Changed Yqey-like protein
YqfD PF06898 Family 8 428 353.90 27 95.03 Changed Putative stage IV sporulation protein YqfD
YqfQ PF14181 Family 17 138 165.80 41 84.95 Changed YqfQ-like protein
YqgB PF11036 Family 2 382 43.00 84 96.41 Changed Virulence promoting factor
YqgF PF14639 Domain 4 495 143.20 28 12.53 New Holliday-junction resolvase-like of SPT6
YqhG PF11079 Family 11 186 223.40 52 94.96 Changed Bacterial protein YqhG of unknown function
YqhR PF11085 Family 12 156 166.00 51 98.23 Changed Conserved membrane protein YqhR
YqjK PF13997 Family 39 560 72.30 73 73.50 Changed YqjK-like protein
YqzE PF14038 Family 19 154 49.50 58 82.40 Changed YqzE-like protein
YqzH PF14164 Family 9 119 60.80 59 94.71 Changed YqzH-like protein
YqzL PF14006 Family 20 174 44.00 51 92.99 Changed YqzL-like protein
YqzM PF14141 Family 11 134 42.90 79 95.72 Changed YqzM-like protein
YrbL-PhoP_reg PF10707 Family 22 504 183.00 67 87.86 Changed PhoP regulatory network protein YrbL
YrhC PF14143 Family 17 134 71.80 56 89.73 Changed YrhC-like protein
YrhK PF14145 Family 57 199 60.00 30 54.02 Changed YrhK-like protein
YrpD PF15493 Family 8 35 192.80 53 73.28 New Domain of unknown function, YrpD
YrvL PF14184 Family 16 154 118.50 39 91.84 Changed Regulatory protein YrvL
YrzO PF14142 Family 2 83 46.00 90 99.79 Changed YrzO-like protein
YsaB PF13983 Family 9 447 76.10 88 78.93 Changed YsaB-like lipoprotein
YscJ_FliF PF01514 Family 21 3384 200.40 28 45.09 Changed Secretory protein of YscJ/FliF family
YscJ_FliF_C PF08345 Family 169 2282 168.80 31 31.19 Changed Flagellar M-ring protein C-terminal
YscK PF06578 Family 9 84 201.50 43 94.20 Changed YOP proteins translocation protein K (YscK)
YscO PF07321 Family 12 104 149.40 38 69.50 Changed Type III secretion protein YscO
YscW PF09619 Family 11 875 110.00 50 60.76 Changed Type III secretion system lipoprotein chaperone (YscW)
YSIRK_signal PF04650 Motif 66 6800 26.50 41 2.13 Changed YSIRK type signal peptide
YtfJ_HI0045 PF09695 Family 26 1008 154.40 61 86.22 Changed Bacterial protein of unknown function (YtfJ_HI0045)
YTH PF04146 Domain 59 968 142.90 42 23.91 Changed YT521-B-like domain
YtkA PF13115 Family 90 656 85.10 22 36.73 Changed YtkA-like
Ytp1 PF10355 Family 36 273 266.30 38 48.98 Changed Protein of unknown function (Ytp1)
YtpI PF14007 Family 24 163 80.50 53 87.64 Changed YtpI-like protein
YTV PF07639 Repeat 18 108 43.40 40 33.91 Changed YTV
YtxC PF08812 Family 33 299 214.20 31 73.96 Changed YtxC-like family
YtxH PF12732 Family 235 1575 104.10 22 81.49 Changed YtxH-like protein
YtzH PF14165 Family 14 132 86.70 69 94.45 Changed YtzH-like protein
YueH PF14166 Family 17 252 75.00 57 93.12 Changed YueH-like protein
YugN PF08868 Domain 26 285 121.80 41 95.57 Changed YugN-like family
YuiB PF14068 Family 21 172 95.60 60 96.48 Changed Putative membrane protein
YukC PF10140 Family 16 402 352.10 39 84.89 Changed WXG100 protein secretion system (Wss), protein YukC
YukD PF08817 Family 54 869 79.60 27 25.86 Changed WXG100 protein secretion system (Wss), protein YukD
YusW PF14039 Family 19 189 91.80 45 49.90 Changed YusW-like protein
YuzL PF14115 Family 7 211 42.10 53 90.24 Changed YuzL-like protein
YvbH_ext PF11724 Family 7 123 60.40 65 30.21 Changed YvbH-like oligomerisation region
YvfG PF09628 Domain 2 24 67.00 88 93.33 Changed YvfG protein
YvrJ PF12841 Family 46 323 37.80 44 70.26 Changed YvrJ protein family
YWFCY PF14293 Family 13 298 59.80 61 10.31 Changed YWFCY protein
YwhD PF08741 Family 13 388 163.10 67 96.27 Changed YwhD family
YwiC PF14256 Family 64 369 127.30 34 50.68 Changed YwiC-like protein
YwpF PF14183 Family 21 269 132.30 70 88.58 Changed YwpF-like protein
YwqJ-deaminase PF14431 Family 14 91 125.80 27 22.31 Changed YwqJ-like deaminase
YxiJ PF14176 Family 8 95 103.30 58 87.22 Changed YxiJ-like protein
YXWGXW PF12779 Repeat 88 527 23.20 37 20.84 Changed YXWGXW repeat (2 copies)
YycC PF14174 Family 13 148 49.30 75 97.51 Changed YycC-like protein
YycH PF07435 Family 6 596 421.40 30 97.23 Changed YycH protein
YycI PF09648 Family 33 732 224.20 27 82.91 Changed YycH protein
YyzF PF14116 Family 25 164 48.20 47 83.06 Changed YyzF-like protein
Y_phosphatase PF00102 Domain 114 7626 210.40 29 34.46 Changed Protein-tyrosine phosphatase
Y_phosphatase2 PF03162 Family 8 714 149.50 27 62.75 Changed Tyrosine phosphatase family
Y_phosphatase3 PF13350 Family 403 1860 158.20 28 56.25 Changed Tyrosine phosphatase family
Y_phosphatase3C PF13348 Domain 223 1604 65.90 20 23.01 Changed Tyrosine phosphatase family C-terminal region
Y_Y_Y PF07495 Domain 79 2976 64.40 23 6.25 Changed Y_Y_Y domain
New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z