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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: A0A0P0WI29_ORYSJ (A0A0P0WI29)

Summary

This is the summary of UniProt entry A0A0P0WI29_ORYSJ (A0A0P0WI29).

Description: DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}
Source organism: Oryza sativa subsp. japonica (Rice) (NCBI taxonomy ID 39947)
Length: 1842 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam RNA_pol_Rpb1_1 13 351
disorder n/a 40 41
disorder n/a 43 55
disorder n/a 153 154
disorder n/a 158 175
disorder n/a 185 187
disorder n/a 190 209
low_complexity n/a 251 259
disorder n/a 255 269
disorder n/a 272 275
disorder n/a 284 288
disorder n/a 291 294
disorder n/a 320 335
Pfam RNA_pol_Rpb1_2 353 521
disorder n/a 402 403
disorder n/a 405 407
disorder n/a 413 419
Pfam RNA_pol_Rpb1_3 524 688
coiled_coil n/a 695 715
Pfam RNA_pol_Rpb1_4 713 819
disorder n/a 724 725
disorder n/a 727 729
disorder n/a 752 753
disorder n/a 758 762
disorder n/a 809 811
Pfam RNA_pol_Rpb1_5 826 1418
Pfam RNA_pol_Rpb1_6 892 1076
coiled_coil n/a 938 958
Pfam RNA_pol_Rpb1_7 1161 1295
disorder n/a 1267 1268
low_complexity n/a 1542 1560
disorder n/a 1547 1563
low_complexity n/a 1563 1574
disorder n/a 1566 1569
disorder n/a 1603 1605
low_complexity n/a 1608 1646
disorder n/a 1609 1610
disorder n/a 1636 1641
disorder n/a 1643 1718
low_complexity n/a 1646 1669
low_complexity n/a 1720 1749
disorder n/a 1723 1724
disorder n/a 1741 1742
disorder n/a 1766 1767
low_complexity n/a 1780 1802
disorder n/a 1783 1787
disorder n/a 1789 1796

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession A0A0P0WI29. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDAARFPYSP AEVAKVEAVQ FGVLSPDEIR QMSVVHIEHA ETMEKGKPKP
50
51
GGLSDPRMGT IDRKIKCETC MAGMAECPGH FGHLELAKPM FHIGFIKTVL
100
101
SIMRCVCFNC SKILADEDDI KFKQALKIRN PKNKLKRIYD ACKNRKICAG
150
151
GDNLDVQEQQ GTDDPVKKRG GCGAQQPNIT VDGMKMVAEY KAPKKKNDDQ
200
201
EQLPEPVDRK QILSAERVLN VLKHISDEDC LLLGLNPKFA RPDWMILQVL
250
251
PIPPPPVRPS VMMDTSSRSE DDLTHQLAMI IRHNENLRRQ ERNGAPAHII
300
301
TEFAQLLQFH IATYFDNELP GQPRATQRSG RPIKSICSRL KAKEGRIRGN
350
351
LMGKRVDFSA RTVITPDPNI NIDELGVPWS IALNLTYPET VTPYNIERLK
400
401
ELVEYGPHPP PGKTGAKYII REDGQRLDLR YVKKSSDQHL ELGYKVERHL
450
451
NDGDFVLFNR QPSLHKMSIM GHRIKIMPYS TFRLNLSVTS PYNADFDGDE
500
501
MNMHVPQSFE TRAEVLELMM VPKCIVSPQS NRPVMGIVQD TLLGCRKITK
550
551
RDTLIEKDVF MNILMWWEDF DGKVPAPAIL KPRPIWTGKQ VFNLIIPKQI
600
601
NLIRFSGWHS EAETRFITPG DTMVRIEKGE LLSGTLCKKT LGTSTGSLIH
650
651
VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FSIGIGDTIA DAATMENINE
700
701
TISKAKNDVK KLIKQFRDNQ LEAEAGRTTM ESFENRVNEV LNKARDVAGS
750
751
SAEKSLSESN NLKAMATAGS KGTFINISQM TACVGQQNVE GKRIPFGFTN
800
801
RTLPHFTKND YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT
850
851
SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAIWIESQ
900
901
KLDSLKMKKA EFDNVFRYEL DDENWKPNYL STQHAEDLKT ISEIRNVFEA
950
951
EVQKLEADRF QLGTEIATTG DNTWPMPVNL KRLIWNAQKT FKIDLRRPSD
1000
1001
MHPMEIVDAI DKLQERLKVV PGDDDISIEA QKNATLFFNI LLRSTFASKR
1050
1051
VLKEYRLTKE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1100
1101
LNTFHYAGVS AKNVTLGVPR LREIINVAKN IKTPSLSVHL KPEVNKKKEL
1150
1151
AKNVQCALEY TTLRSVTHAT EIWYDPDPLG TIIEEDAEFV QSYYEMPDED
1200
1201
IDPDKISPWL LRIELNREMM VDKKLSMADI AEKINHEFDD DLSCIFNDDN
1250
1251
ADKLILRVRI TNDEAQKGEI QDEYGEDDVF LKKIESNMLT EMALRGIPGI
1300
1301
NKVFIKEGNV NKFEDNDGFK TEKGWMLDTE GVNLLAVMCH EDVDATRTTS
1350
1351
NHLIEVIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA VLCDTMTYRG
1400
1401
HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAVYAESD PLRGVSENIM
1450
1451
LGQLAPIGTG GCDLYLNDQM LKQAIELQLP SYVEGLDFGM MTSACSPISG
1500
1501
TPYHQGMMSP SYLLSPDIRA SPTAADAQFS PYVGGMAFSP VSSPGNYTPS
1550
1551
SGGGYSPSPP VCTPGPGSFT SSSPYNPVSP FYSPASPLSC PLTSPSYVPT
1600
1601
SLPHSPTSPI YSATSPIYSP SSPIYSPTSL SYSPTSPVYS PTSPVYNPTS
1650
1651
SAYSPTSPSY NPTSPSYTPH HHLIAPHRRL TITAPHHRHI AQHRRLTAPH
1700
1701
HHHTAQHRRL TVRRHPHIVR HRLHTALLRL HTAQHLLATA QHLQATAHLR
1750
1751
QATILLRSST RLHMHTLQAA QITTGTELFS TSPTYSPTSP SYSQPSPSYS
1800
1801
PTRSDFIICF ASSDYQKRVY FSTTSNCAHA MPFFAAMIIR IA        
1842
 

Show the unformatted sequence.

Checksums:
CRC64:F6D54A96B8B939C9
MD5:c09708bfc8d14e3943bb8ba127d5186c

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;