Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: VP4_ROTSH (A2T3T2)

Summary

This is the summary of UniProt entry VP4_ROTSH (A2T3T2).

Description: Outer capsid protein VP4
Source organism: Rotavirus A (isolate RVA/Monkey/South Africa/SA11-H96/1958/G3P5B[2]) (RV-A) (Simian Agent 11 (isolate SI/South Africa/H96/58)) (NCBI taxonomy ID 450149)
View Pfam proteome data.
Length: 776 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
disorder n/a 26 34
disorder n/a 36 38
disorder n/a 46 49
disorder n/a 51 53
disorder n/a 56 57
disorder n/a 59 69
Pfam VP4_haemagglut 65 224
disorder n/a 187 190
disorder n/a 219 221
Pfam Rota_VP4_MID 250 474
coiled_coil n/a 484 511
Pfam VP4_helical 485 776
low_complexity n/a 561 589
low_complexity n/a 591 615
disorder n/a 619 621

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession A2T3T2. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MASLIYRQLL TNSYTVDLSD EIQEIGSTKS QNVTINPGPF AQTGYAPVNW
50
51
GPGEINDSTT VEPLLDGPYQ PTTFNPPVDY WMLLAPTTPG VIVEGTNNTD
100
101
RWLATILIEP NVQSENRTYT IFGIQEQLTV SNTSQDQWKF IDVVKTTANG
150
151
SIGQYGPLLS SPKLYAVMKH NEKLYTYEGQ TPNARTAHYS TTNYDSVNMT
200
201
AFCDFYIIPR SEESKCTEYI NNGLPPIQNT RNVVPLSLTA RDVIHYRAQA
250
251
NEDIVISKTS LWKEMQYNRD ITIRFKFANT IIKSGGLGYK WSEISFKPAN
300
301
YQYTYTRDGE EVTAHTTCSV NGVNDFSFNG GYLPTDFVVS KFEVIKENSY
350
351
VYIDYWDDSQ AFRNVVYVRS LAANLNSVMC TGGSYNFSLP VGQWPVLTGG
400
401
AVSLHSAGVT LSTQFTDFVS LNSLRFRFRL AVEEPHFKLT RTRLDRLYGL
450
451
PAADPNNGKE YYEIAGRFSL ISLVPSNDDY QTPIANSVTV RQDLERQLGE
500
501
LREEFNALSQ EIAMSQLIDL ALLPLDMFSM FSGIKSTIDA AKSMATNVMK
550
551
KFKKSGLANS VSTLTDSLSD AASSISRGSS IRSIGSSASA WTDVSTQITD
600
601
ISSSVSSVST QTSTISRRLR LKEMATQTEG MNFDDISAAV LKTKIDKSTQ
650
651
ISPNTIPDIV TEASEKFIPN RAYRVINNDD VFEAGIDGKF FAYKVDTFEE
700
701
IPFDVQKFAD LVTDSPVISA IIDFKTLKNL NDNYGITKQQ AFNLLRSDPR
750
751
VLREFINQDN PIIRNRIEQL IMQCRL                          
776
 

Show the unformatted sequence.

Checksums:
CRC64:EA9B43CE96CC53CF
MD5:a753d4d8acb5f9f5e9d43898ef250104

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
VP4_haemagglut 65 - 224 4YG3 A 65 - 225 Jmol OpenAstexViewer
4YG6 A 65 - 225 Jmol OpenAstexViewer
B 65 - 225 Jmol OpenAstexViewer
C 65 - 225 Jmol OpenAstexViewer
D 65 - 225 Jmol OpenAstexViewer