!!

Powering down the Pfam website
On October 5th, we will start redirecting the traffic from Pfam (pfam.xfam.org) to InterPro (www.ebi.ac.uk/interpro). The Pfam website will be available at legacy.pfam.xfam.org until January 2023, when it will be decommissioned. You can read more about the sunset period in our blog post.

Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: Y405_HALVD (D4H031)

Summary

This is the summary of UniProt entry Y405_HALVD (D4H031).

Description: Probable cell surface fusion protein HVO_0405 {ECO:0000305}
Source organism: Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (NCBI taxonomy ID 309800)
Length: 657 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
sig_p n/a 1 30
low_complexity n/a 9 25
disorder n/a 26 29
disorder n/a 33 39
disorder n/a 78 87
disorder n/a 91 92
disorder n/a 94 96
low_complexity n/a 110 124
Pfam LVIVD 120 143
disorder n/a 122 126
disorder n/a 170 171
Pfam LVIVD 199 239
disorder n/a 233 272
disorder n/a 290 337
disorder n/a 359 361
disorder n/a 364 371
disorder n/a 373 375
disorder n/a 408 472
low_complexity n/a 439 447
low_complexity n/a 450 465
low_complexity n/a 467 486
disorder n/a 488 519
disorder n/a 522 560
Pfam NifU 566 625
disorder n/a 574 578
disorder n/a 580 585
disorder n/a 625 657

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession D4H031. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDRRQFLRTV GASALAVSTA AVVGSRPATA HPGPFEPLGR IDIDGAKEAV
50
51
VSADGETVFV AATSGYAVVD ISAPERQELL AERRDPLSDR EDGPFRGLYD
100
101
AKLDGDTLLV VGPANPIPGA PAGVLVVDVS DPATPEEIAF HETEFPIHNC
150
151
FAADGRAYLT ANDGDRNPLV VLDIDSGDEL GRWSVVDADD RWADVPPSMR
200
201
SVHDVWVHDR VAHVALWDAG TWLVDLSDPA SPWVLGAVSP GDPEEIAALT
250
251
PRGRNRERRT PPGNHHYVAT DDAGDLLGVG VESWAIEVDR DDGTTELVGG
300
301
PSGVELWDVT DPANPERRST IEPPASPDPT LGGVWTTAHN FDFRDDRLYT
350
351
SWYRGGVKRH DVSDPTDPVE LAWWRDPERA SFWTAQYAYP FADEGVFVAS
400
401
SRGVGDASPA LYTFPDHAGD QRDPPTLRAE PTTEPLVNTP TPTPSPSGNE
450
451
TAASASETES STSTTDAPGF GLGVGAAALG VAGWLVRVTS GATESDRRSR
500
501
PRASTGTPHR VVPASNLSRT TEIAFLSPAG ASGEPFHSNP WGSKHRSMSD
550
551
ESESLKERVE TWMVGQMPII QMHGGNSVVR KADAESGEVV VELGGACAGC
600
601
GISNITAQNI QSDLIMTFDE ITDVQVKVPS SGDHGSSTVE GGRGGELQYG
650
651
DEGPGHF                                               
657
 

Show the unformatted sequence.

Checksums:
CRC64:6B5BCB8A308195F2
MD5:33acb3bb4510926236faa897a4d2af2b

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;