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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: I1JDF1_SOYBN (I1JDF1)

Summary

This is the summary of UniProt entry I1JDF1_SOYBN (I1JDF1).

Description: General transcription and DNA repair factor IIH helicase subunit XPD {ECO:0000256|ARBA:ARBA00014344}
Source organism: Glycine max (Soybean) (Glycine hispida) (NCBI taxonomy ID 3847)
Length: 758 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam DEAD_2 72 256
low_complexity n/a 87 98
coiled_coil n/a 256 276
Pfam HBB 269 413
Pfam Helicase_C_2 524 700
disorder n/a 732 733
disorder n/a 735 736

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession I1JDF1. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKLEIEDITV YFPYDKIYPE QYSYMVELKR ALDAKGHCLL EMPTGTGKTI
50
51
ALLSLITSYV LSKPHSPLKL LYCTRTVHEM EKTLAELRLL HHYQLRHLGP
100
101
AAKILALGLS SRKNLCVNPR VLAAENRDSV DAGCRKLTAS WVRAVAAENP
150
151
SVPSCEFFEQ YERAGSSAVL PPGVYTLQDL RAYGKEKGWC PYYLARHMVQ
200
201
FANVVVYSYQ YLLDPKVAGI ISKEMQKESV VVFDEAHNID NVCIEALSVS
250
251
VRRQTIEGAR RNLSRMRQEI DKFKATDAGR LRAEYNRLVE GLALRGDLPA
300
301
TDAWLANPAL PDDILKEAVP GNIRRAEHFI HVLRRLVQYL EGRLDTENVE
350
351
KESPVSFVVS ILNHAGIDQK SLKFCYDRLH SLMMTLEITD TDEFLHIQTI
400
401
CDFATLVGTY ARGFSIIIEP FDERMPHIPD PVLQLCCHDA SLAIKPVFER
450
451
FQSVVITSGT LSPIDLYPRL LNFNPVVSRS FTMSLTRDCI CPMVLTRGSD
500
501
QLPVSTKFDM RSDLGVVRNY GRLLLEMASV VPDGIVCFFV SYSYMDGIVN
550
551
TWNENGILKE IMQHKLVFIE TQDVVETTLA LDNYRKACDC GRGAIFFSVA
600
601
RGKVAEGIDF DRHYGRLVIM FGVPFQYTLS KILLARLEYL RDTFQIKEGD
650
651
FLTFDALRQA AQCVGRVIRS KADYGMMIFA DKRYSRHDKR SKLPSWILSH
700
701
LHDAHLNLST DMALHVARDF LRKMAQPYDK TGGTGRKTLL SQEDLEKMAV
750
751
SGMGDVMY                                              
758
 

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Checksums:
CRC64:339BFB8045755DCC
MD5:5c32eea106850efe3dfe0f72dd1bc3b7

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;