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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SYY_PYRHO (O58739)

Summary

This is the summary of UniProt entry SYY_PYRHO (O58739).

Description: Tyrosine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02009}
Source organism: Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (NCBI taxonomy ID 70601)
View Pfam proteome data.
Length: 375 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam tRNA-synt_1b 30 352

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession O58739. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDIEERINLV LKKPTEEVLT VENLRHLFEI GAPLQHYIGF EISGYIHLGT
50
51
GLMAGAKIAD FQKAGIKTRV FLADWHSWIN DKLGGDLEVI QEVALKYFKV
100
101
GMEKSIEVMG GDPKKVEFVL ASEILEKGDY WQTVIDISKN VTLSRVMRSI
150
151
TIMGRQMGEA IDFAKLIYPM MQVADIFYQG VTIAHAGMDQ RKAHVIAIEV
200
201
AQKLRYHPIV HEGEKLKPVA VHHHLLLGLQ EPPKWPIESE EEFKEIKAQM
250
251
KMSKSKPYSA VFIHDSPEEI RQKLRKAFCP AREVRYNPVL DWVEYIIFRE
300
301
EPTEFTVHRP AKFGGDVTYT TFEELKRDFA EGKLHPLDLK NAVAEYLINL
350
351
LEPIRRYFEK HPEPLELMRS VKITR                           
375
 

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Checksums:
CRC64:8A4BC945037A9F1B
MD5:4575a35920b34bd6a90baa03cea7da3d

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
tRNA-synt_1b 30 - 352 2CYC A 30 - 352 Jmol OpenAstexViewer
B 30 - 352 Jmol OpenAstexViewer