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10  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: ARAF_ECOLI (P02924)

Summary

This is the summary of UniProt entry ARAF_ECOLI (P02924).

Description: L-arabinose-binding periplasmic protein
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 329 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
sig_p n/a 1 23
Pfam Peripla_BP_1 25 320
disorder n/a 147 148
disorder n/a 174 175
disorder n/a 179 180
low_complexity n/a 317 328
disorder n/a 328 329

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P02924. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MHKFTKALAA IGLAAVMSQS AMAENLKLGF LVKQPEEPWF QTEWKFADKA
50
51
GKDLGFEVIK IAVPDGEKTL NAIDSLAASG AKGFVICTPD PKLGSAIVAK
100
101
ARGYDMKVIA VDDQFVNAKG KPMDTVPLVM MAATKIGERQ GQELYKEMQK
150
151
RGWDVKESAV MAITANELDT ARRRTTGSMD ALKAAGFPEK QIYQVPTKSN
200
201
DIPGAFDAAN SMLVQHPEVK HWLIVGMNDS TVLGGVRATE GQGFKAADII
250
251
GIGINGVDAV SELSKAQATG FYGSLLPSPD VHGYKSSEML YNWVAKDVEP
300
301
PKFTEVTDVV LITRDNFKEE LEKKGLGGK                       
329
 

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Checksums:
CRC64:A79D167EA92B0C64
MD5:a364105b35b80beaabd67a384340fbc1

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Peripla_BP_1 25 - 318 2WRZ B 2 - 295 Jmol OpenAstexViewer
25 - 320 1ABE A 2 - 297 Jmol OpenAstexViewer
1ABF A 2 - 297 Jmol OpenAstexViewer
1APB A 2 - 297 Jmol OpenAstexViewer
1BAP A 2 - 297 Jmol OpenAstexViewer
2WRZ A 2 - 297 Jmol OpenAstexViewer
5ABP A 2 - 297 Jmol OpenAstexViewer
6ABP A 2 - 297 Jmol OpenAstexViewer
7ABP A 2 - 297 Jmol OpenAstexViewer
8ABP A 2 - 297 Jmol OpenAstexViewer
9ABP A 2 - 297 Jmol OpenAstexViewer