Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
5  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: OMPC_ECOLI (P06996)

Summary

This is the summary of UniProt entry OMPC_ECOLI (P06996).

Description: Outer membrane protein C
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 367 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
sig_p n/a 1 21
low_complexity n/a 2 23
Pfam Porin_1 27 367
disorder n/a 177 195
disorder n/a 229 230

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P06996. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKVKVLSLLV PALLVAGAAN AAEVYNKDGN KLDLYGKVDG LHYFSDNKDV
50
51
DGDQTYMRLG FKGETQVTDQ LTGYGQWEYQ IQGNSAENEN NSWTRVAFAG
100
101
LKFQDVGSFD YGRNYGVVYD VTSWTDVLPE FGGDTYGSDN FMQQRGNGFA
150
151
TYRNTDFFGL VDGLNFAVQY QGKNGNPSGE GFTSGVTNNG RDALRQNGDG
200
201
VGGSITYDYE GFGIGGAISS SKRTDAQNTA AYIGNGDRAE TYTGGLKYDA
250
251
NNIYLAAQYT QTYNATRVGS LGWANKAQNF EAVAQYQFDF GLRPSLAYLQ
300
301
SKGKNLGRGY DDEDILKYVD VGATYYFNKN MSTYVDYKIN LLDDNQFTRD
350
351
AGINTDNIVA LGLVYQF                                    
367
 

Show the unformatted sequence.

Checksums:
CRC64:6A49370CC8A1A225
MD5:b6ec19d9dd21f506c99af675868a1b58

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Porin_1 27 - 366 4A8D M 6 - 345 Jmol OpenAstexViewer
27 - 367 2J1N A 6 - 346 Jmol OpenAstexViewer
B 6 - 346 Jmol OpenAstexViewer
C 6 - 346 Jmol OpenAstexViewer
2J4U P 1006 - 1346 Jmol OpenAstexViewer
Q 1006 - 1346 Jmol OpenAstexViewer
R 1006 - 1346 Jmol OpenAstexViewer
U 1006 - 1346 Jmol OpenAstexViewer
V 1006 - 1346 Jmol OpenAstexViewer
W 1006 - 1346 Jmol OpenAstexViewer
2ZLE D 1194 - 1534 Jmol OpenAstexViewer
3NB3 D 6 - 346 Jmol OpenAstexViewer