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13  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: DACA_ECOLI (P0AEB2)

Summary

This is the summary of UniProt entry DACA_ECOLI (P0AEB2).

Description: D-alanyl-D-alanine carboxypeptidase DacA EC=3.4.16.4 EC=3.5.2.6
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
Length: 403 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
sig_p n/a 1 29
Pfam Peptidase_S11 35 273
Pfam PBP5_C 292 383

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P0AEB2. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNTIFSARIM KRLALTTALC TAFISAAHAD DLNIKTMIPG VPQIDAESYI
50
51
LIDYNSGKVL AEQNADVRRD PASLTKMMTS YVIGQAMKAG KFKETDLVTI
100
101
GNDAWATGNP VFKGSSLMFL KPGMQVPVSQ LIRGINLQSG NDACVAMADF
150
151
AAGSQDAFVG LMNSYVNALG LKNTHFQTVH GLDADGQYSS ARDMALIGQA
200
201
LIRDVPNEYS IYKEKEFTFN GIRQLNRNGL LWDNSLNVDG IKTGHTDKAG
250
251
YNLVASATEG QMRLISAVMG GRTFKGREAE SKKLLTWGFR FFETVNPLKV
300
301
GKEFASEPVW FGDSDRASLG VDKDVYLTIP RGRMKDLKAS YVLNSSELHA
350
351
PLQKNQVVGT INFQLDGKTI EQRPLVVLQE IPEGNFFGKI IDYIKLMFHH
400
401
WFG                                                   
403
 

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Checksums:
CRC64:7FAAB8E98452FF22
MD5:67e71e11a5d766dba6838af555ed17d3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
PBP5_C 292 - 383 1HD8 A 263 - 354 Show 3D Structure View in InterPro
1NJ4 A 263 - 354 Show 3D Structure View in InterPro
1NZO A 263 - 354 Show 3D Structure View in InterPro
1NZU A 263 - 354 Show 3D Structure View in InterPro
1SDN A 263 - 354 Show 3D Structure View in InterPro
1Z6F A 263 - 354 Show 3D Structure View in InterPro
3BEB A 263 - 354 Show 3D Structure View in InterPro
3BEC A 263 - 354 Show 3D Structure View in InterPro
3MZD A 263 - 354 Show 3D Structure View in InterPro
3MZE A 263 - 354 Show 3D Structure View in InterPro
3MZF A 263 - 354 Show 3D Structure View in InterPro
5J8X A 263 - 354 Show 3D Structure View in InterPro
6NTZ A 292 - 383 Show 3D Structure View in InterPro
Peptidase_S11 35 - 273 1HD8 A 6 - 244 Show 3D Structure View in InterPro
1NJ4 A 6 - 244 Show 3D Structure View in InterPro
1NZO A 6 - 244 Show 3D Structure View in InterPro
1NZU A 6 - 244 Show 3D Structure View in InterPro
1SDN A 6 - 244 Show 3D Structure View in InterPro
1Z6F A 6 - 244 Show 3D Structure View in InterPro
3BEB A 6 - 244 Show 3D Structure View in InterPro
3BEC A 6 - 244 Show 3D Structure View in InterPro
3MZD A 6 - 244 Show 3D Structure View in InterPro
3MZE A 6 - 244 Show 3D Structure View in InterPro
3MZF A 6 - 244 Show 3D Structure View in InterPro
5J8X A 6 - 244 Show 3D Structure View in InterPro
6NTZ A 35 - 273 Show 3D Structure View in InterPro
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The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;