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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SECD_ECOLI (P0AG90)

Summary

This is the summary of UniProt entry SECD_ECOLI (P0AG90).

Description: Protein translocase subunit SecD
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 615 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam SecD-TM1 2 103
transmembrane n/a 7 25
low_complexity n/a 12 21
Pfam Sec_GG 115 141
disorder n/a 294 307
disorder n/a 327 341
Pfam SecD_SecF 426 606
transmembrane n/a 453 472
transmembrane n/a 477 497
transmembrane n/a 503 524
transmembrane n/a 545 571
transmembrane n/a 577 605

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P0AG90. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL
50
51
IQVQKTLQEE KITAKSVALE EGAILARFDS TDTQLRAREA LMGVMGDKYV
100
101
VALNLAPATP RWLAAIHAEP MKLGLDLRGG VHFLMEVDMD TALGKLQEQN
150
151
IDSLRSDLRE KGIPYTTVRK ENNYGLSITF RDAKARDEAI AYLSKRHPDL
200
201
VISSQGSNQL RAVMSDARLS EAREYAVQQN INILRNRVNQ LGVAEPVVQR
250
251
QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAASGRVPG
300
301
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG
350
351
NIMSNFTKDN IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS
400
401
RLGNSFRITG INNPNEARQL SLLLRAGALI APIQIVEERT IGPTLGMQNI
450
451
EQGLEACLAG LLVSILFMII FYKKFGLIAT SALIANLILI VGIMSLLPGA
500
501
TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ AIDEGYRGAF
550
551
SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI
600
601
VNLLYGGKRV KKLSI                                      
615
 

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Checksums:
CRC64:1099E6A9CC988EBE
MD5:51fdfca8e71148381d19e004eafb7861

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
SecD-TM1 2 - 27 5MG3 D 2 - 27 Jmol OpenAstexViewer
SecD_SecF 426 - 606 5MG3 D 426 - 606 Jmol OpenAstexViewer