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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: LIG4_PHACH (P11542)

Summary

This is the summary of UniProt entry LIG4_PHACH (P11542).

Description: Ligninase H2
Source organism: Phanerochaete chrysosporium (White-rot fungus) (Sporotrichum pruinosum) (NCBI taxonomy ID )
Length: 372 amino acids
Reference Proteome: x

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam peroxidase 49 286
Pfam Peroxidase_ext 289 367

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P11542. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAFKQLLAAL SVALTLQVTQ AAPNLDKRVA CPDGVHTASN AACCAWFPVL
50
51
DDIQQNLFHG GQCGAEAHEA LRMVFHDSIA ISPKLQSQGK FGGGGADGSI
100
101
ITFSSIETTY HPNIGLDEVV AIQKPFIAKH GVTRGDFIAF AGAVGVSNCP
150
151
GAPQMQFFLG RPEATQAAPD GLVPEPFHTI DQVLARMLDA GGFDEIETVW
200
201
LLSAHSIAAA NDVDPTISGL PFDSTPGQFD SQFFVETQLR GTAFPGKTGI
250
251
QGTVMSPLKG EMRLQTDHLF ARDSRTACEW QSFVNNQTKL QEDFQFIFTA
300
301
LSTLGHDMNA MTDCSEVIPA PKPVNFGPSF FPAGKTHADI EQACASTPFP
350
351
TLITAPGPSA SVARIPPPPS PN                              
372
 

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Checksums:
CRC64:A17AD0AB5FE1A290
MD5:9e6bc4f5403e57c6cc01eaa25b62f657

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
peroxidase 49 - 286 1QPA A 20 - 257 Jmol OpenAstexViewer
B 20 - 257 Jmol OpenAstexViewer
Peroxidase_ext 289 - 367 1QPA A 260 - 340 Jmol OpenAstexViewer
B 260 - 340 Jmol OpenAstexViewer