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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: GAG_HV2G1 (P18041)

Summary

This is the summary of UniProt entry GAG_HV2G1 (P18041).

Description: Gag polyprotein
Source organism: Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (HIV-2) (NCBI taxonomy ID )
Length: 522 amino acids
Reference Proteome: x

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam Gag_p17 2 140
Pfam Gag_p24 152 366
Pfam zf-CCHC 390 407
Pfam zf-CCHC 411 428

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P18041. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MGARNSVLRG KKADELEKIR LRPSGKKKYR LKHIVWAANE LDKFGLAESL
50
51
LESKEGCQKI LTVLDPLVPT GSENLKSLFN TVCVIWCLHA EEKVKDTEEA
100
101
KKLVQRHLGA ETGTAEKMPS TSRPTAPPSG RGRNFPVQQT GGGNYIHVPL
150
151
SPRTLNAWVK LVEDKKFGAE VVPGFQALSE GCTPYDINQM LNCVGDHQAA
200
201
MQIIREIIND EAADWDAQHP IPGPLPAGQL RDPRGSDIAG TTSTVEEQIQ
250
251
WMYRPQNPVP VGNIYRRWIQ IGLQKCVRMY NPTNILDVKQ GPKEPFQSYV
300
301
DRFYKSLRAE QTDPAVKNWM TQTLLIQNAN PDCKLVLKGL GMNPTLEEML
350
351
TACQGVGGPG QKARLMAEAL KEALTPPPIP FAAAQQRKVI RCWNCGKEGH
400
401
SARQCRAPRR QGCWKCGKTG HVMAKCPERQ AGFLGMGPWG KKPRNFPVAQ
450
451
APPGLIPTAP PADPAVDLLE RYMQQGREQR EQRERPYKEV TEDLLHLEQG
500
501
KAPHREATED LLHLNSLFGK DQ                              
522
 

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Checksums:
CRC64:401341167A700553
MD5:506cbb832e402c62c76509fb912d3d07

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
zf-CCHC 390 - 407 2DI2 A 7 - 24 Jmol OpenAstexViewer
2EC7 A 7 - 24 Jmol OpenAstexViewer
411 - 412 2DI2 A 28 - 29 Jmol OpenAstexViewer
411 - 428 2EC7 A 28 - 45 Jmol OpenAstexViewer