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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: PRP4_YEAST (P20053)

Summary

This is the summary of UniProt entry PRP4_YEAST (P20053).

Description: U4/U6 small nuclear ribonucleoprotein PRP4
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 465 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
disorder n/a 15 28
low_complexity n/a 83 99
disorder n/a 92 107
low_complexity n/a 98 107
coiled_coil n/a 129 149
disorder n/a 138 141
disorder n/a 147 149
Pfam WD40 255 293
Pfam WD40 298 335
Pfam WD40 339 377
Pfam WD40 427 465

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P20053. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSKYIALENL PVDLQHKGAT QNESTADILK QLPHERLQAV LEKIPEEDLE
50
51
VRRLLSILKK PEVVENEDVQ QRRIRLAEIL MVDEIDLENI NNMENINGEE
100
101
VDEEDDEDFF TPATSELIFA RRFLINYSLE RSRKRLQKEM ERHQKFNTRQ
150
151
ELLSRRTELQ RMANLELAGS QLVSTKPISA VSLSTDDMVV ATGSWAGDLQ
200
201
VLNSQTLQPL TQKLDSHVGK IGAIDWHPDS NNQMISCAED GLIKNFQYSN
250
251
EEGGLRLLGD LVGHERRISD VKYHPSGKFI GSASHDMTWR LWDASTHQEL
300
301
LLQEGHDKGV FSLSFQCDGS LVCSGGMDSL SMLWDIRSGS KVMTLAGHSK
350
351
PIYTVAWSPN GYQVATGGGD GIINVWDIRK RDEGQLNQIL AHRNIVTQVR
400
401
FSKEDGGKKL VSCGYDNLIN VYSSDTWLKM GSLAGHTDKI ISLDISNNSH
450
451
FLVSGGWDRS IKLWN                                      
465
 

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Checksums:
CRC64:7CCCA3A92AC0CE78
MD5:f169ec04893b47dbd2daf47b703ed2e6

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
WD40 255 - 293 3JCM B 255 - 293 Jmol OpenAstexViewer
5GAN H 255 - 293 Jmol OpenAstexViewer
5GAP H 255 - 293 Jmol OpenAstexViewer
298 - 335 3JCM B 298 - 335 Jmol OpenAstexViewer
5GAN H 298 - 335 Jmol OpenAstexViewer
5GAP H 298 - 335 Jmol OpenAstexViewer
339 - 377 3JCM B 339 - 377 Jmol OpenAstexViewer
5GAN H 339 - 377 Jmol OpenAstexViewer
5GAP H 339 - 377 Jmol OpenAstexViewer
427 - 465 3JCM B 427 - 465 Jmol OpenAstexViewer
5GAN H 427 - 465 Jmol OpenAstexViewer
5GAP H 427 - 465 Jmol OpenAstexViewer