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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SRMB_ECOLI (P21507)

Summary

This is the summary of UniProt entry SRMB_ECOLI (P21507).

Description: ATP-dependent RNA helicase SrmB {ECO:0000255|HAMAP-Rule:MF_00967}
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 444 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
low_complexity n/a 6 16
Pfam DEAD 28 199
low_complexity n/a 28 37
disorder n/a 43 46
Pfam Helicase_C 234 343
disorder n/a 332 339
disorder n/a 344 348
disorder n/a 375 444
low_complexity n/a 395 418

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P21507. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTVTTFSELE LDESLLEALQ DKGFTRPTAI QAAAIPPALD GRDVLGSAPT
50
51
GTGKTAAYLL PALQHLLDFP RKKSGPPRIL ILTPTRELAM QVSDHARELA
100
101
KHTHLDIATI TGGVAYMNHA EVFSENQDIV VATTGRLLQY IKEENFDCRA
150
151
VETLILDEAD RMLDMGFAQD IEHIAGETRW RKQTLLFSAT LEGDAIQDFA
200
201
ERLLEDPVEV SANPSTRERK KIHQWYYRAD DLEHKTALLV HLLKQPEATR
250
251
SIVFVRKRER VHELANWLRE AGINNCYLEG EMVQGKRNEA IKRLTEGRVN
300
301
VLVATDVAAR GIDIPDVSHV FNFDMPRSGD TYLHRIGRTA RAGRKGTAIS
350
351
LVEAHDHLLL GKVGRYIEEP IKARVIDELR PKTRAPSEKQ TGKPSKKVLA
400
401
KRAEKKKAKE KEKPRVKKRH RDTKNIGKRR KPSGTGVPPQ TTEE      
444
 

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Checksums:
CRC64:1A459538A25807A7
MD5:1f2107a654c7249a1ecb0304f17fb7f7

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Helicase_C 234 - 343 2YJT D 234 - 343 Jmol OpenAstexViewer