Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: SRP54_SCHPO (P21565)

Summary

This is the summary of UniProt entry SRP54_SCHPO (P21565).

Description: Signal recognition particle 54 kDa protein homolog
Source organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (NCBI taxonomy ID 284812)
Length: 522 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
Pfam SRP54_N 6 83
Pfam SRP54 101 296
low_complexity n/a 294 303
Pfam SRP_SPB 325 427
disorder n/a 352 353
disorder n/a 355 363
disorder n/a 404 405
low_complexity n/a 428 442
disorder n/a 441 444
disorder n/a 448 462
low_complexity n/a 457 480
disorder n/a 465 473
disorder n/a 475 476
disorder n/a 478 479
low_complexity n/a 490 508
disorder n/a 492 493
disorder n/a 495 496
disorder n/a 502 522

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P21565. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVFADLGRRL NSALGDFSKA TSVNEELVDT LLKNICTALL ETDVNVRLVQ
50
51
ELRSNIKKKI NVSTLPQGIN GKRIVQKAVF DELCSLVDPK VDAFTPKKGR
100
101
PSVIMMVGLQ GSGKTTTCSK LALHYQRRGL KSCLVAADTF RAGAFDQLKQ
150
151
NAIKARVPYF GSYTETDPVV IAKEGVDKFK NDRFDVIIVD TSGRHQQEQE
200
201
LFAEMVEISD AIRPDQTIMI LDASIGQAAE SQSKAFKETA DFGAVIITKL
250
251
DGHAKGGGAL SAVAATKTPI VFIGTGEHIN DLERFSPRSF ISKLLGLGDL
300
301
EGLMEHVQSL DFDKKNMVKN LEQGKFTVRD FRDQLGNIMK LGPLSKMASM
350
351
IPGMSNMMNG MNDEEGSLRM KRMLYIVDSM TEQELDSDGL LFVEQPSRVL
400
401
RVARGSGTSV LEVEETISQV RVFAQMAKKI GGKDGILGKL GGNPAAALKK
450
451
DPRQLAAMQK RMQAMGMGGG MPGLNPGSMN FGDISKMANM LMGGGGPGGA
500
501
GGMDFSGMLN QFQNMQKPPR RR                              
522
 

Show the unformatted sequence.

Checksums:
CRC64:EA21E48F82CC97C1
MD5:9cc5bae3d1e96e9dbb217cb8e26e41cb

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;