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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: SYD_ECOLI (P21889)

Summary

This is the summary of UniProt entry SYD_ECOLI (P21889).

Description: Aspartate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00044}
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 590 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam tRNA_anti-codon 18 102
Pfam tRNA-synt_2 117 558
disorder n/a 283 284
Pfam GAD 307 406
disorder n/a 444 450
disorder n/a 456 458

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P21889. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MRTEYCGQLR LSHVGQQVTL CGWVNRRRDL GSLIFIDMRD REGIVQVFFD
50
51
PDRADALKLA SELRNEFCIQ VTGTVRARDE KNINRDMATG EIEVLASSLT
100
101
IINRADVLPL DSNHVNTEEA RLKYRYLDLR RPEMAQRLKT RAKITSLVRR
150
151
FMDDHGFLDI ETPMLTKATP EGARDYLVPS RVHKGKFYAL PQSPQLFKQL
200
201
LMMSGFDRYY QIVKCFRDED LRADRQPEFT QIDVETSFMT APQVREVMEA
250
251
LVRHLWLEVK GVDLGDFPVM TFAEAERRYG SDKPDLRNPM ELTDVADLLK
300
301
SVEFAVFAGP ANDPKGRVAA LRVPGGASLT RKQIDEYGNF VKIYGAKGLA
350
351
YIKVNERAKG LEGINSPVAK FLNAEIIEDI LDRTAAQDGD MIFFGADNKK
400
401
IVADAMGALR LKVGKDLGLT DESKWAPLWV IDFPMFEDDG EGGLTAMHHP
450
451
FTSPKDMTAA ELKAAPENAV ANAYDMVING YEVGGGSVRI HNGDMQQTVF
500
501
GILGINEEEQ REKFGFLLDA LKYGTPPHAG LAFGLDRLTM LLTGTDNIRD
550
551
VIAFPKTTAA ACLMTEAPSF ANPTALAELS IQVVKKAENN           
590
 

Show the unformatted sequence.

Checksums:
CRC64:A411D3E16D3A9284
MD5:b0e3a6ee8141cd32ca4ae3b08c47a7ac

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
GAD 307 - 406 1C0A A 307 - 406 Jmol OpenAstexViewer
1EQR A 307 - 406 Jmol OpenAstexViewer
B 307 - 406 Jmol OpenAstexViewer
C 307 - 406 Jmol OpenAstexViewer
1IL2 A 307 - 406 Jmol OpenAstexViewer
B 1307 - 1406 Jmol OpenAstexViewer
tRNA-synt_2 117 - 558 1C0A A 117 - 558 Jmol OpenAstexViewer
1EQR A 117 - 558 Jmol OpenAstexViewer
B 117 - 558 Jmol OpenAstexViewer
C 117 - 558 Jmol OpenAstexViewer
1IL2 A 117 - 558 Jmol OpenAstexViewer
B 1117 - 1558 Jmol OpenAstexViewer
tRNA_anti-codon 18 - 102 1C0A A 18 - 102 Jmol OpenAstexViewer
1EQR A 18 - 102 Jmol OpenAstexViewer
B 18 - 102 Jmol OpenAstexViewer
C 18 - 102 Jmol OpenAstexViewer
1IL2 A 18 - 102 Jmol OpenAstexViewer
B 1018 - 1102 Jmol OpenAstexViewer