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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: DACD_ECOLI (P33013)

Summary

This is the summary of UniProt entry DACD_ECOLI (P33013).

Description: D-alanyl-D-alanine carboxypeptidase DacD EC=3.4.16.4
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 388 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
sig_p n/a 1 21
Pfam Peptidase_S11 25 263
Pfam PBP5_C 282 373

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P33013. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKRRLIIAAS LFVFNLSSGF AAENIPFSPQ PPEIHAGSWV LMDYTTGQIL
50
51
TAGNEHQQRN PASLTKLMTG YVVDRAIDSH RITPDDIVTV GRDAWAKDNP
100
101
VFVGSSLMFL KEGDRVSVRD LSRGLIVDSG NDACVALADY IAGGQRQFVE
150
151
MMNNYAEKLH LKDTHFETVH GLDAPGQHSS AYDLAVLSRA IIHGEPEFYH
200
201
MYSEKSLTWN GITQQNRNGL LWDKTMNVDG LKTGHTSGAG FNLIASAVDG
250
251
QRRLIAVVMG ADSAKGREEE ARKLLRWGQQ NFTTVQILHR GKKVGTERIW
300
301
YGDKENIDLG TEQEFWMVLP KAEIPHIKAK YTLDGKELTA PISAHQRVGE
350
351
IELYDRDKQV AHWPLVTLES VGEGSMFSRL SDYFHHKA             
388
 

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Checksums:
CRC64:453FE18C21D207D0
MD5:f127034441895bbf923e978dec500d2d

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
PBP5_C 282 - 367 5FSR A 261 - 346 Jmol OpenAstexViewer
B 261 - 346 Jmol OpenAstexViewer
Peptidase_S11 25 - 263 5FSR A 4 - 242 Jmol OpenAstexViewer
B 4 - 242 Jmol OpenAstexViewer