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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SMC5_YEAST (Q08204)

Summary

This is the summary of UniProt entry SMC5_YEAST (Q08204).

Description: Structural maintenance of chromosomes protein 5
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 1093 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 15 30
Pfam SMC_N 41 1064
low_complexity n/a 133 147
coiled_coil n/a 208 242
coiled_coil n/a 275 302
coiled_coil n/a 310 330
disorder n/a 311 312
disorder n/a 430 431
disorder n/a 433 443
disorder n/a 447 450
disorder n/a 543 546
disorder n/a 596 597
coiled_coil n/a 663 757
disorder n/a 677 679
disorder n/a 681 682
disorder n/a 688 689
disorder n/a 691 696
disorder n/a 698 699
disorder n/a 702 703
disorder n/a 705 710
low_complexity n/a 741 757
low_complexity n/a 760 772
disorder n/a 817 818
disorder n/a 835 836
disorder n/a 848 849
coiled_coil n/a 890 910
disorder n/a 901 902
disorder n/a 911 912
disorder n/a 980 981
disorder n/a 983 985

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q08204. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTSLIDLGRY VERTHHGEDT EPRSKRVKIA KPDLSSFQPG SIIKIRLQDF
50
51
VTYTLTEFNL SPSLNMIIGP NGSGKSTFVC AVCLGLAGKP EYIGRSKKVE
100
101
DFIKNGQDVS KIEITLKNSP NVTDIEYIDA RDETIKITRI ITRSKRRSDY
150
151
LINDYQVSES VVKTLVAQLN IQLDNLCQFL SQERVEEFAR LKSVKLLVET
200
201
IRSIDASLLD VLDELRELQG NEQSLQKDLD FKKAKIVHLR QESDKLRKSV
250
251
ESLRDFQNKK GEIELHSQLL PYVKVKDHKE KLNIYKEEYE RAKANLRAIL
300
301
KDKKPFANTK KTLENQVEEL TEKCSLKTDE FLKAKEKINE IFEKLNTIRD
350
351
EVIKKKNQNE YYRGRTKKLQ ATIISTKEDF LRSQEILAQT HLPEKSVFED
400
401
IDIKRKEIIN KEGEIRDLIS EIDAKANAIN HEMRSIQRQA ESKTKSLTTT
450
451
DKIGILNQDQ DLKEVRDAVL MVREHPEMKD KILEPPIMTV SAINAQFAAY
500
501
LAQCVDYNTS KALTVVDSDS YKLFANPILD KFKVNLRELS SADTTPPVPA
550
551
ETVRDLGFEG YLSDFITGDK RVMKMLCQTS KIHTIPVSRR ELTPAQIKKL
600
601
ITPRPNGKIL FKRIIHGNRL VDIKQSAYGS KQVFPTDVSI KQTNFYQGSI
650
651
MSNEQKIRIE NEIINLKNEY NDRKSTLDAL SNQKSGYRHE LSELASKNDD
700
701
INREAHQLNE IRKKYTMRKS TIETLREKLD QLKREARKDV SQKIKDIDDQ
750
751
IQQLLLKQRH LLSKMASSMK SLKNCQKELI STQILQFEAQ NMDVSMNDVI
800
801
GFFNEREADL KSQYEDKKKF VKEMRDTPEF QSWMREIRSY DQDTKEKLNK
850
851
VAEKYEEEGN FNLSFVQDVL DKLESEIAMV NHDESAVTIL DQVTAELREL
900
901
EHTVPQQSKD LETIKAKLKE DHAVLEPKLD DIVSKISARF ARLFNNVGSA
950
951
GAVRLEKPKD YAEWKIEIMV KFRDNAPLKK LDSHTQSGGE RAVSTVLYMI
1000
1001
ALQEFTSAPF RVVDEINQGM DSRNERIVHK AMVENACAEN TSQYFLITPK
1050
1051
LLTGLHYHEK MRIHCVMAGS WIPNPSEDPK MIHFGETSNY SFD       
1093
 

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Checksums:
CRC64:6752B96438CFB549
MD5:2f016d2d092d397d5ee0f4c91ade0e1d

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
SMC_N 304 - 363 3HTK A 304 - 363 Jmol OpenAstexViewer
739 - 811 3HTK B 739 - 811 Jmol OpenAstexViewer