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16  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: SKP1A_ARATH (Q39255)

Summary

This is the summary of UniProt entry SKP1A_ARATH (Q39255).

Description: SKP1-like protein 1A {ECO:0000303|PubMed:10778750}
Source organism: Arabidopsis thaliana (Mouse-ear cress) (NCBI taxonomy ID 3702)
Length: 160 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam Skp1_POZ 4 64
low_complexity n/a 64 77
disorder n/a 70 71
Pfam Skp1 111 158
disorder n/a 136 141
disorder n/a 144 146
low_complexity n/a 146 154
disorder n/a 150 157

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q39255. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK
50
51
ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
100
101
LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE
150
151
VRRENQWAFE                                            
160
 

Show the unformatted sequence.

Checksums:
CRC64:56B84C19FD5ABF17
MD5:bea2a28e91b4425cfcf22e61555fd66c

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Skp1 111 - 158 2P1M A 111 - 158 Show 3D Structure View in InterPro
2P1N A 111 - 158 Show 3D Structure View in InterPro
D 111 - 158 Show 3D Structure View in InterPro
2P1O A 111 - 158 Show 3D Structure View in InterPro
2P1P A 111 - 158 Show 3D Structure View in InterPro
2P1Q A 111 - 158 Show 3D Structure View in InterPro
3C6N A 111 - 158 Show 3D Structure View in InterPro
3C6O A 111 - 158 Show 3D Structure View in InterPro
3C6P A 111 - 158 Show 3D Structure View in InterPro
3OGK A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
E 111 - 158 Show 3D Structure View in InterPro
G 111 - 158 Show 3D Structure View in InterPro
I 111 - 158 Show 3D Structure View in InterPro
K 111 - 158 Show 3D Structure View in InterPro
M 111 - 158 Show 3D Structure View in InterPro
O 111 - 158 Show 3D Structure View in InterPro
3OGL A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
E 111 - 158 Show 3D Structure View in InterPro
G 111 - 158 Show 3D Structure View in InterPro
I 111 - 158 Show 3D Structure View in InterPro
K 111 - 158 Show 3D Structure View in InterPro
M 111 - 158 Show 3D Structure View in InterPro
O 111 - 158 Show 3D Structure View in InterPro
3OGM A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
E 111 - 158 Show 3D Structure View in InterPro
G 111 - 158 Show 3D Structure View in InterPro
I 111 - 158 Show 3D Structure View in InterPro
K 111 - 158 Show 3D Structure View in InterPro
M 111 - 158 Show 3D Structure View in InterPro
O 111 - 158 Show 3D Structure View in InterPro
5HYW B 111 - 158 Show 3D Structure View in InterPro
D 111 - 158 Show 3D Structure View in InterPro
5HZG C 111 - 158 Show 3D Structure View in InterPro
G 111 - 158 Show 3D Structure View in InterPro
6BRO A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
6BRP A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
6BRQ A 111 - 158 Show 3D Structure View in InterPro
C 111 - 158 Show 3D Structure View in InterPro
Skp1_POZ 18 - 61 6BRQ A 18 - 61 Show 3D Structure View in InterPro
23 - 58 3C6O A 23 - 58 Show 3D Structure View in InterPro
23 - 61 6BRQ C 23 - 61 Show 3D Structure View in InterPro
4 - 61 6BRP A 4 - 61 Show 3D Structure View in InterPro
4 - 64 6BRP C 4 - 64 Show 3D Structure View in InterPro
5 - 62 2P1N A 5 - 62 Show 3D Structure View in InterPro
D 5 - 62 Show 3D Structure View in InterPro
2P1Q A 5 - 62 Show 3D Structure View in InterPro
5 - 64 2P1O A 5 - 64 Show 3D Structure View in InterPro
3OGK A 5 - 64 Show 3D Structure View in InterPro
C 5 - 64 Show 3D Structure View in InterPro
E 5 - 64 Show 3D Structure View in InterPro
G 5 - 64 Show 3D Structure View in InterPro
I 5 - 64 Show 3D Structure View in InterPro
K 5 - 64 Show 3D Structure View in InterPro
M 5 - 64 Show 3D Structure View in InterPro
O 5 - 64 Show 3D Structure View in InterPro
3OGL A 5 - 64 Show 3D Structure View in InterPro
C 5 - 64 Show 3D Structure View in InterPro
E 5 - 64 Show 3D Structure View in InterPro
G 5 - 64 Show 3D Structure View in InterPro
I 5 - 64 Show 3D Structure View in InterPro
K 5 - 64 Show 3D Structure View in InterPro
M 5 - 64 Show 3D Structure View in InterPro
O 5 - 64 Show 3D Structure View in InterPro
3OGM A 5 - 64 Show 3D Structure View in InterPro
C 5 - 64 Show 3D Structure View in InterPro
E 5 - 64 Show 3D Structure View in InterPro
G 5 - 64 Show 3D Structure View in InterPro
I 5 - 64 Show 3D Structure View in InterPro
K 5 - 64 Show 3D Structure View in InterPro
M 5 - 64 Show 3D Structure View in InterPro
O 5 - 64 Show 3D Structure View in InterPro
6 - 63 6BRO C 6 - 63 Show 3D Structure View in InterPro
8 - 47 2P1P A 8 - 47 Show 3D Structure View in InterPro
8 - 58 2P1M A 8 - 58 Show 3D Structure View in InterPro
3C6P A 8 - 58 Show 3D Structure View in InterPro
8 - 64 5HZG C 8 - 64 Show 3D Structure View in InterPro
G 8 - 64 Show 3D Structure View in InterPro
6BRO A 8 - 64 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;