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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: SYD_THEKO (Q52428)

Summary

This is the summary of UniProt entry SYD_THEKO (Q52428).

Description: Aspartate--tRNA(Asp) ligase {ECO:0000255|HAMAP-Rule:MF_02075}
Source organism: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (NCBI taxonomy ID 69014)
Length: 438 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam tRNA_anti-codon 19 98
Pfam tRNA-synt_2 116 433

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q52428. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MYRTHYSSEI TEELNGQKVK VAGWVWEVKD LGGIKFLWIR DRDGIVQITA
50
51
PKKKVDPELF KLIPKLRSED VVAVEGVVNF TPKAKLGFEI LPEKIVVLNR
100
101
AETPLPLDPT GKVKAELDTR LDNRFMDLRR PEVMAIFKIR SSVFKAVRDF
150
151
FHENGFIEIH TPKIIATATE GGTELFPMKY FEEDAFLAQS PQLYKQIMMA
200
201
SGLDRVYEIA PIFRAEEHNT TRHLNEAWSI DSEMAFIEDE EEVMSFLERL
250
251
VAHAINYVRE HNAKELDILN FELEEPKLPF PRVSYDKALE ILGDLGKEIP
300
301
WGEDIDTEGE RLLGKYMMEN ENAPLYFLYQ YPSEAKPFYI MKYDNKPEIC
350
351
RAFDLEYRGV EISSGGQREH RHDILVEQIK EKGLNPESFE FYLKAFRYGM
400
401
PPHGGFGLGA ERLIKQMLDL PNIREVILFP RDRRRLTP             
438
 

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Checksums:
CRC64:E03C8766ADD2209A
MD5:6e46f23e4729b85e62e38feac8375bb9

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
tRNA-synt_2 116 - 433 1B8A A 116 - 433 Show 3D Structure View in InterPro
B 1116 - 1433 Show 3D Structure View in InterPro
3NEL A 116 - 433 Show 3D Structure View in InterPro
B 116 - 433 Show 3D Structure View in InterPro
3NEM A 116 - 433 Show 3D Structure View in InterPro
B 116 - 433 Show 3D Structure View in InterPro
3NEN A 116 - 433 Show 3D Structure View in InterPro
B 116 - 433 Show 3D Structure View in InterPro
tRNA_anti-codon 19 - 98 1B8A A 19 - 98 Show 3D Structure View in InterPro
B 1019 - 1098 Show 3D Structure View in InterPro
3NEL A 19 - 98 Show 3D Structure View in InterPro
B 19 - 98 Show 3D Structure View in InterPro
3NEM A 19 - 98 Show 3D Structure View in InterPro
B 19 - 98 Show 3D Structure View in InterPro
3NEN A 19 - 98 Show 3D Structure View in InterPro
B 19 - 98 Show 3D Structure View in InterPro
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