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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: LDH1_STAAC (Q5HJD7)

Summary

This is the summary of UniProt entry LDH1_STAAC (Q5HJD7).

Description: L-lactate dehydrogenase 1 {ECO:0000303|PubMed:18356528}
Source organism: Staphylococcus aureus (strain COL) (NCBI taxonomy ID )
Length: 317 amino acids
Reference Proteome: x

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam Ldh_1_N 7 146
Pfam Ldh_1_C 149 317

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q5HJD7. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNKFKGNKVV LIGNGAVGSS YAFSLVNQSI VDELVIIDLD TEKVRGDVMD
50
51
LKHATPYSPT TVRVKAGEYS DCHDADLVVI CAGAAQKPGE TRLDLVSKNL
100
101
KIFKSIVGEV MASKFDGIFL VATNPVDILA YATWKFSGLP KERVIGSGTI
150
151
LDSARFRLLL SEAFDVAPRS VDAQIIGEHG DTELPVWSHA NIAGQPLKTL
200
201
LEQRPEGKAQ IEQIFVQTRD AAYDIIQAKG ATYYGVAMGL ARITEAIFRN
250
251
EDAVLTVSAL LEGEYEEEDV YIGVPAVINR NGIRNVVEIP LNDEEQSKFA
300
301
HSAKTLKDIM AEAEELK                                    
317
 

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Checksums:
CRC64:CDDE481269B7DE56
MD5:1197273e6036b1332711c14fa03f5aad

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ldh_1_C 149 - 312 3D0O A 149 - 312 Jmol OpenAstexViewer
3D4P A 149 - 312 Jmol OpenAstexViewer
149 - 313 3D0O B 149 - 313 Jmol OpenAstexViewer
3D4P B 149 - 313 Jmol OpenAstexViewer
149 - 316 3H3J A 149 - 316 Jmol OpenAstexViewer
149 - 317 3H3J B 149 - 317 Jmol OpenAstexViewer
Ldh_1_N 7 - 146 3D0O A 7 - 146 Jmol OpenAstexViewer
B 7 - 146 Jmol OpenAstexViewer
3D4P A 7 - 146 Jmol OpenAstexViewer
B 7 - 146 Jmol OpenAstexViewer
3H3J A 7 - 146 Jmol OpenAstexViewer
B 7 - 146 Jmol OpenAstexViewer