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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOB1_METJA (Q60181)

Summary

This is the summary of UniProt entry RPOB1_METJA (Q60181).

Description: DNA-directed RNA polymerase subunit B' EC=2.7.7.6
Source organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (NCBI taxonomy ID 243232)
Length: 636 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam RNA_pol_Rpb2_4 11 72
disorder n/a 30 31
disorder n/a 42 45
disorder n/a 48 49
disorder n/a 51 52
Pfam RNA_pol_Rpb2_5 93 133
disorder n/a 116 119
low_complexity n/a 119 130
Pfam RNA_pol_Rpb2_6 140 512
disorder n/a 311 315
disorder n/a 502 506
Pfam RNA_pol_Rpb2_7 514 612
coiled_coil n/a 610 630
low_complexity n/a 613 636

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q60181. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKNLASREVN IYVNGKLVGT TDKPEELVNF IREKRRKGEL PQYTTVAYNE
50
51
ESNDIHINTD AGRIVRPLIV VENGKPKLTK EHIEKLKKGE ITFSDLVKEG
100
101
VIEYLDAEEE ENAYIALSEE ELTEKHTHLE IDPLTILGIG AGVAPYPEHN
150
151
SAPRITMAAA MGKQSLGIPM SNIKWRLDTR GHYLHYPQVP IVRTKHQEIL
200
201
GFDKRPAGQN FVVAIMSYEG YNMEDAIVFN KSAIDRGLGR STFFRTYDAC
250
251
ERRYPGGQMD RFEIPDKGVR GYRSEECYRY LEEDGIVAVE SHVKGGDVIV
300
301
GKTSPPRFLE EHEITIQVKP QRRDSSVVVR HGEEGYIDKV ILTETKEGNR
350
351
LVKVKVRDLR IPELGDKFAS RHGQKGVMGL TVPQEDLPFT ESGIVPDIII
400
401
NPHAIPSRMT VGQLLEMLGG KVGALEGRRI DGTIFSGEKE WDLRKALEAL
450
451
GFKHHGKEVM YDGKTGKKFE VEIYIGIAYY QKLHHLVAGK IHARSRGPVQ
500
501
VLTRQPTEGR AREGGLRFGE MERDVLIGHG AAMLLKERLM DESDPYDICI
550
551
CSKCGDFAIL DYKRGLKYCP ICGEIENLYS SKKIPFVRIP YAFKLLLDEL
600
601
KSMCILPRIK VRDKVELEDF EEFVEKLEKE KVKQKQ               
636
 

Show the unformatted sequence.

Checksums:
CRC64:81DE30267A572914
MD5:3b35887b2a895fc28fea948f86641b02

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;