|Description:||Protein LSM12 homolog B|
Danio rerio (Zebrafish) (Brachydanio rerio)
(NCBI taxonomy ID
|Length:||196 amino acids|
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
This image shows the arrangement of the Pfam domains that we found on this sequence. Clicking on a domain will take you to the page describing that Pfam entry. The table below gives the domain boundaries for each of the domains. More...
E-values are based on searching the Pfam-A family against UniProtKB 2021_03 using hmmsearch.
Download the data used to generate the domain graphic in JSON format.
or the data used to generate the graphic in JSON format.
|Source||Domain||Start||End||Gathering threshold (bits)||Score (bits)||E-value|
or domain scores.
This is the amino acid sequence of the UniProt sequence database entry with the accession Q6NSN1. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
MAAPGPGEYF SVGSHVSCLT CLGQRLQGEV VAFDYPSKML TLKCAPSSGK
PNLSDVMLVN LAYVSEVDII TDRAETPPPL ASLNFNKLVN RARAEKEDKL
SLAYAVSAGV SVEGQQLFQT IHKTIKECKW QEKNIIVMDD VVISPPYQVD
NCKGKEGSAL SHVRKIVEKH FRDVESQISV QHSQQAQHTQ DSALSS
the unformatted sequence.
Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.
AlphaFold Structure Prediction
Model confidence scale
|Very High (pLDDT > 90)|
|Confident (90 > pLDDT > 70)|
|Low (70 > pLDDT > 50)|
|Very Low (pLDDT < 50)|