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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: LS12B_DANRE (Q6NSN1)

Summary

This is the summary of UniProt entry LS12B_DANRE (Q6NSN1).

Description: Protein LSM12 homolog B
Source organism: Danio rerio (Zebrafish) (Brachydanio rerio) (NCBI taxonomy ID 7955)
Length: 196 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
Pfam AD 81 166
disorder n/a 178 196

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q6NSN1. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAAPGPGEYF SVGSHVSCLT CLGQRLQGEV VAFDYPSKML TLKCAPSSGK
50
51
PNLSDVMLVN LAYVSEVDII TDRAETPPPL ASLNFNKLVN RARAEKEDKL
100
101
SLAYAVSAGV SVEGQQLFQT IHKTIKECKW QEKNIIVMDD VVISPPYQVD
150
151
NCKGKEGSAL SHVRKIVEKH FRDVESQISV QHSQQAQHTQ DSALSS    
196
 

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Checksums:
CRC64:0C376C98AA1FC3DF
MD5:46d3cf032cb4b087c1683e5d049845ac

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;