Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: YI31B_YEAST (Q7LHG5)

Summary

This is the summary of UniProt entry YI31B_YEAST (Q7LHG5).

Description: Transposon Ty3-I Gag-Pol polyprotein EC=3.4.23.- EC=2.7.7.49 EC=2.7.7.7 EC=3.1.26.4
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
Length: 1498 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
Pfam Ty3_capsid 16 207
disorder n/a 179 180
low_complexity n/a 214 224
disorder n/a 217 220
disorder n/a 227 229
disorder n/a 231 256
low_complexity n/a 247 255
Pfam Peptidase_A2B 286 462
disorder n/a 422 425
disorder n/a 428 450
disorder n/a 453 454
disorder n/a 460 463
disorder n/a 469 545
disorder n/a 560 574
disorder n/a 596 598
disorder n/a 601 602
disorder n/a 604 610
disorder n/a 625 629
low_complexity n/a 652 668
Pfam RVT_1 665 823
Pfam RT_RNaseH_2 884 984
Pfam Integrase_H2C2 1117 1177
Pfam rve 1196 1291
disorder n/a 1283 1299
disorder n/a 1388 1395
disorder n/a 1481 1484
disorder n/a 1486 1487

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q7LHG5. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSFMDQIPGG GNYPKLPVEC LPNFPIQPSL TFRGRNDSHK LKNFISEIML
50
51
NMSMISWPND ASRIVYCRRH LLNPAAQWAN DFVQEQGILE ITFDTFIQGL
100
101
YQHFYKPPDI NKIFNAITQL SEAKLGIERL NQRFRKIWDR MPPDFMTEKA
150
151
AIMTYTRLLT KETYNIVRMH KPETLKDAME EAYQTTALTE RFFPGFELDA
200
201
DGDTIIGATT HLQEEYDSDY DSEDNLTQNR YVHTVRTRRS YNKPMSNHRN
250
251
RRNNNASREE CIKNRLCFYC KKEGHRLNEC RARKAVLTDL ELESKDQQTL
300
301
FIKTLPIVHY IAIPEMDNTA EKTIKIQNTK VKTLFDSGSP TSFIRRDIVE
350
351
LLKYEIYETP PLRFRGFVAT KSAVTSEAVT IDLKINDLQI TLAAYILDNM
400
401
DYQLLIGNPI LRRYPKILHT VLNTRESPDS LKPKTYRSET VNNVRTYSAG
450
451
NRGNPRNIKL SFAPTILEAT DPKSAGNRGN PRNTKLSLAP TILEATDPKS
500
501
AGNRGDSRTK TLSLATTTPA AIDPLTTLDN PGSTQSTFAQ FPIPEEASIL
550
551
EEDGKYSNVV STIQSVEPNA TDHSNKDTFC TLPVWLQQKY REIIRNDLPP
600
601
RPADINNIPV KHDIEIKPGA RLPRLQPYHV TEKNEQEINK IVQKLLDNKF
650
651
IVPSKSPCSS PVVLVPKKDG TFRLCVDYRT LNKATISDPF PLPRIDNLLS
700
701
RIGNAQIFTT LDLHSGYHQI PMEPKDRYKT AFVTPSGKYE YTVMPFGLVN
750
751
APSTFARYMA DTFRDLRFVN VYLDDILIFS ESPEEHWKHL DTVLERLKNE
800
801
NLIVKKKKCK FASEETEFLG YSIGIQKIAP LQHKCAAIRD FPTPKTVKQA
850
851
QRFLGMINYY RRFIPNCSKI AQPIQLFICD KSQWTEKQDK AIEKLKAALC
900
901
NSPVLVPFNN KANYRLTTDA SKDGIGAVLE EVDNKNKLVG VVGYFSKSLE
950
951
SAQKNYPAGE LELLGIIKAL HHFRYMLHGK HFTLRTDHIS LLSLQNKNEP
1000
1001
ARRVQRWLDD LATYDFTLEY LAGPKNVVAD AISRAIYTIT PETSRPIDTE
1050
1051
SWKSYYKSDP LCSAVLIHMK ELTQHNVTPE DMSAFRSYQK KLELSETFRK
1100
1101
NYSLEDEMIY YQDRLVVPIK QQNAVMRLYH DHTLFGGHFG VTVTLAKISP
1150
1151
IYYWPKLQHS IIQYIRTCVQ CQLIKSHRPR LHGLLQPLPI AEGRWLDISM
1200
1201
DFVTGLPPTS NNLNMILVVV DRFSKRAHFI ATRKTLDATQ LIDLLFRYIF
1250
1251
SYHGFPRTIT SDRDVRMTAD KYQELTKRLG IKSTMSSANH PQTDGQSERT
1300
1301
IQTLNRLLRA YVSTNIQNWH VYLPQIEFVY NSTPTRTLGK SPFEIDLGYL
1350
1351
PNTPAIKSDD EVNARSFTAV ELAKHLKALT IQTKEQLEHA QIEMETNNNQ
1400
1401
RRKPLLLNIG DHVLVHRDAY FKKGAYMKVQ QIYVGPFRVV KKINDNAYEL
1450
1451
DLNSHKKKHR VINVQFLKSL YTVQTRTQRI NQSAPLRELR EHTKLLHS  
1498
 

Show the unformatted sequence.

Checksums:
CRC64:4E51C3EFBDEFD7E4
MD5:7047a54ba281aab1c7ea6e388953b9d9

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ty3_capsid 105 - 195 6R23 A 105 - 195 Show 3D Structure View in InterPro
B 105 - 195 Show 3D Structure View in InterPro
37 - 110 6R22 A 37 - 110 Show 3D Structure View in InterPro
B 37 - 110 Show 3D Structure View in InterPro
37 - 191 6R24 B 37 - 191 Show 3D Structure View in InterPro
F 37 - 191 Show 3D Structure View in InterPro
H 37 - 191 Show 3D Structure View in InterPro
37 - 195 6R24 A 37 - 195 Show 3D Structure View in InterPro
C 37 - 195 Show 3D Structure View in InterPro
D 37 - 195 Show 3D Structure View in InterPro
E 37 - 195 Show 3D Structure View in InterPro
G 37 - 195 Show 3D Structure View in InterPro
I 37 - 195 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;