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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: SHL2_ORYSJ (Q8LHH9)

Summary

This is the summary of UniProt entry SHL2_ORYSJ (Q8LHH9).

Description: Probable RNA-dependent RNA polymerase SHL2 EC=2.7.7.48
Source organism: Oryza sativa subsp. japonica (Rice) (NCBI taxonomy ID 39947)
Length: 1218 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 1 25
low_complexity n/a 14 26
disorder n/a 71 74
disorder n/a 77 80
low_complexity n/a 80 91
disorder n/a 86 89
low_complexity n/a 228 243
low_complexity n/a 262 268
Pfam RdRP 441 1023
disorder n/a 879 882
disorder n/a 908 910
disorder n/a 912 921

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8LHH9. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MRSPRGGAAA QPSGRRGDTT AAAAGDLVTT QVSLGGFDAG VAAGDLADFL
50
51
EHEVGLVWRC RVKTSWTPPD SYPDFALPTA PASASAAAAP PRYDRVPPHA
100
101
FVHFARPEGA RRAADLAGET RLILRGKPLR VASAPDSSLR VSRRSSIAPF
150
151
RFPDVRLEVG ALPSPGAFLA AWRGPDAGLD LSVDPFDGCC RLVFTRDTAF
200
201
TFPGFREVAA IRCDVKLEFP VRDVLEVRLY RLDCSLLLRL AAAPLVHYRT
250
251
ADDDFHEPVP FDLLDDDDPW IRTTDITPSG AIGRCGVYRI SFSARFWPKM
300
301
DRALDYMRER RVAIVDCGGG WGPRRGLTVR DELEFGEPMQ DVFFCLQHAE
350
351
GLKFPLLFMV NALVHKGIIN QHQLTPEFFS LLGRSEENVN VAALRDFWGD
400
401
KFPVFDACGR LKKALNRVAR NPKLLCSKVG DDHAEVRRLV ITPTRAYCLP
450
451
PEVERSNRVL RHYHEVADRF LRVTFMDEGM QVLNNNVLNS FTAPIVKDLM
500
501
SNFFQQKTTV YKRVRMLLTE GFHMCGRKYS FLAFSSNQLR DKSAWFFAED
550
551
RKTTVEAIRK WMGRFTSKNV AKHAARMGQC FSSTYATVTM RPDEVDESFD
600
601
DVVHNEYIFS DGIGKITPDL ALEVAERLQL TDNPPSAYQI RFAGFKGVIA
650
651
VWQGHGDGTR LFLRPSMRKF ESNHLVLEVV SWTKFQPGFL NRQIIILLSS
700
701
LNVPDSIFWQ MQETMLSNLN NILSDRDVAF EVLTTSCADD GNTAALMLSA
750
751
GFEPRTEPHL KAMLLAIRSA QLQDLLEKAR IFVPKGRWLM GCLDELGVLE
800
801
QGQCFIRATV PSLNSYFVKH GSRFSSTDKN TEVILGTVVI AKNPCLHPGD
850
851
VRILEAVDVP ELHHLVDCLV FPQKGERPHA NEASGSDLDG DLYFVTWDEK
900
901
LIPPGKKSWN PMDYSPPEAK QLPRQVSQHD IIDFFLKNMI SENLGRICNA
950
951
HVVHADLSEY GAMDEKCIHL AELAATAVDF PKTGKLAIMP PHLKPKVYPD
1000
1001
FMGKEDGQSY KSEKILGRLY RSIQEASNGD VVSQEVCTPN DLPYDIDLEV
1050
1051
PGASDFLASA WQCKCSYDAQ LSALLSQYRV RTEAELVTGH ITFLVKNSSK
1100
1101
KQGDIKDRLK TAYSALRKEF KSTFESIASD QCEIGDDEKN LLYEMKASAW
1150
1151
YQVTYHPKWV EKSRGILGPD GEEIPASLSF AWIPVDYLAR IKLRCHGKVR
1200
1201
VEGQKPVERL AAYISERI                                   
1218
 

Show the unformatted sequence.

Checksums:
CRC64:984FD38DC5474482
MD5:8478ee4af8fdc2f960ffd0f53486b0b7

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;