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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: TYDP2_CAEEL (Q9XWG3)

Summary

This is the summary of UniProt entry TYDP2_CAEEL (Q9XWG3).

Description: 5'-tyrosyl-DNA phosphodiesterase EC=3.1.4.-
Source organism: Caenorhabditis elegans (NCBI taxonomy ID 6239)
View Pfam proteome data.
Length: 362 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

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Source Domain Start End
disorder n/a 1 43
coiled_coil n/a 1 28
Pfam UBA_4 46 87
low_complexity n/a 91 109
Pfam Exo_endo_phos 123 353

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9XWG3. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSNSDDEIQE IEAKRQKMSQ EDSEVEIEIL DEPEQGKLKN SSMSDEQKLH
50
51
EFAIITATDE AFAQSILQDV DWDLKKALDV FYGSEAFAEA RSAAVMGASS
100
101
SMASSGAAVM TAEDLKGFEV SVMSWNIDGL DGRSLLTRMK AVAHIVKNVN
150
151
PDILFLQEVV DRDLAPIDKL QSLYKIYYSN KGCQYYTAIL VSKMFDVEKH
200
201
DVIHFQNSGM YRTLQILEGS IGGLKVFLLN THLESTREHR PQRCAQFGFC
250
251
MDKVREIIAQ NPGALVFFGG DLNLRDEEVS RVPDGVKDAW EAAGSDNKTK
300
301
FTWDTFKNDN KQGFHGAKMR FDRLYWSGPL DKVKFTLEGR QRIRSCLCFP
350
351
SDHWAINATF FA                                         
362
 

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Checksums:
CRC64:7895C47504866E52
MD5:cc814455e63149e7960fd7c87a39dd07

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Exo_endo_phos 123 - 353 4F1I A 123 - 353 Jmol OpenAstexViewer
4FVA A 123 - 353 Jmol OpenAstexViewer
B 123 - 353 Jmol OpenAstexViewer
C 123 - 353 Jmol OpenAstexViewer
D 123 - 353 Jmol OpenAstexViewer
4GEW A 123 - 353 Jmol OpenAstexViewer
UBA_4 46 - 87 4F1I A 46 - 87 Jmol OpenAstexViewer
4GEW A 46 - 87 Jmol OpenAstexViewer