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47  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RM11_HUMAN (Q9Y3B7)

Summary

This is the summary of UniProt entry RM11_HUMAN (Q9Y3B7).

Description: 39S ribosomal protein L11, mitochondrial
Source organism: Homo sapiens (Human) (NCBI taxonomy ID 9606)
Length: 192 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam Ribosomal_L11_N 20 78
low_complexity n/a 27 40
Pfam Ribosomal_L11 83 155

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9Y3B7. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSKLGRAARG LRKPEVGGVI RAIVRAGLAM PGPPLGPVLG QRGVSINQFC
50
51
KEFNERTKDI KEGIPLPTKI LVKPDRTFEI KIGQPTVSYF LKAAAGIEKG
100
101
ARQTGKEVAG LVTLKHVYEI ARIKAQDEAF ALQDVPLSSV VRSIIGSARS
150
151
LGIRVVKDLS SEELAAFQKE RAIFLAAQKE ADLAAQEEAA KK        
192
 

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Checksums:
CRC64:92506A20044BF278
MD5:c845828fd3e57daafc545a391c8a9142

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_L11 83 - 155 3J7Y J 83 - 155 Show 3D Structure View in InterPro
3J9M J 83 - 155 Show 3D Structure View in InterPro
5OOL J 83 - 155 Show 3D Structure View in InterPro
5OOM J 83 - 155 Show 3D Structure View in InterPro
6I9R J 83 - 155 Show 3D Structure View in InterPro
6NU2 J 83 - 155 Show 3D Structure View in InterPro
6NU3 J 83 - 155 Show 3D Structure View in InterPro
6VLZ J 83 - 155 Show 3D Structure View in InterPro
6VMI J 83 - 155 Show 3D Structure View in InterPro
6ZM5 J 83 - 155 Show 3D Structure View in InterPro
6ZM6 J 83 - 155 Show 3D Structure View in InterPro
6ZS9 XJ 83 - 155 Show 3D Structure View in InterPro
6ZSA XJ 83 - 155 Show 3D Structure View in InterPro
6ZSB XJ 83 - 155 Show 3D Structure View in InterPro
6ZSC XJ 83 - 155 Show 3D Structure View in InterPro
6ZSD XJ 83 - 155 Show 3D Structure View in InterPro
6ZSE XJ 83 - 155 Show 3D Structure View in InterPro
6ZSG XJ 83 - 155 Show 3D Structure View in InterPro
7A5F J3 83 - 155 Show 3D Structure View in InterPro
7A5G J3 83 - 155 Show 3D Structure View in InterPro
7A5H J 83 - 155 Show 3D Structure View in InterPro
7A5I J3 83 - 155 Show 3D Structure View in InterPro
7A5J J 83 - 155 Show 3D Structure View in InterPro
7A5K J3 83 - 155 Show 3D Structure View in InterPro
7L08 J 83 - 155 Show 3D Structure View in InterPro
7L20 J 83 - 155 Show 3D Structure View in InterPro
7O9K J 83 - 155 Show 3D Structure View in InterPro
7O9M J 83 - 155 Show 3D Structure View in InterPro
7ODR J 83 - 155 Show 3D Structure View in InterPro
7ODS J 83 - 155 Show 3D Structure View in InterPro
7ODT J 83 - 155 Show 3D Structure View in InterPro
7OF0 J 83 - 155 Show 3D Structure View in InterPro
7OF2 J 83 - 155 Show 3D Structure View in InterPro
7OF3 J 83 - 155 Show 3D Structure View in InterPro
7OF4 J 83 - 155 Show 3D Structure View in InterPro
7OF5 J 83 - 155 Show 3D Structure View in InterPro
7OF6 J 83 - 155 Show 3D Structure View in InterPro
7OF7 J 83 - 155 Show 3D Structure View in InterPro
7OG4 XJ 83 - 155 Show 3D Structure View in InterPro
7OI7 J 83 - 155 Show 3D Structure View in InterPro
7OI8 J 83 - 155 Show 3D Structure View in InterPro
7OI9 J 83 - 155 Show 3D Structure View in InterPro
7OIA J 83 - 155 Show 3D Structure View in InterPro
7OIB J 83 - 155 Show 3D Structure View in InterPro
7OIC J 83 - 155 Show 3D Structure View in InterPro
7OID J 83 - 155 Show 3D Structure View in InterPro
7OIE J 83 - 155 Show 3D Structure View in InterPro
Ribosomal_L11_N 20 - 78 3J7Y J 20 - 78 Show 3D Structure View in InterPro
3J9M J 20 - 78 Show 3D Structure View in InterPro
5OOL J 20 - 78 Show 3D Structure View in InterPro
5OOM J 20 - 78 Show 3D Structure View in InterPro
6I9R J 20 - 78 Show 3D Structure View in InterPro
6NU2 J 20 - 78 Show 3D Structure View in InterPro
6NU3 J 20 - 78 Show 3D Structure View in InterPro
6VLZ J 20 - 78 Show 3D Structure View in InterPro
6VMI J 20 - 78 Show 3D Structure View in InterPro
6ZM5 J 20 - 78 Show 3D Structure View in InterPro
6ZM6 J 20 - 78 Show 3D Structure View in InterPro
6ZS9 XJ 20 - 78 Show 3D Structure View in InterPro
6ZSA XJ 20 - 78 Show 3D Structure View in InterPro
6ZSB XJ 20 - 78 Show 3D Structure View in InterPro
6ZSC XJ 20 - 78 Show 3D Structure View in InterPro
6ZSD XJ 20 - 78 Show 3D Structure View in InterPro
6ZSE XJ 20 - 78 Show 3D Structure View in InterPro
6ZSG XJ 20 - 78 Show 3D Structure View in InterPro
7A5F J3 20 - 78 Show 3D Structure View in InterPro
7A5G J3 20 - 78 Show 3D Structure View in InterPro
7A5H J 20 - 78 Show 3D Structure View in InterPro
7A5I J3 20 - 78 Show 3D Structure View in InterPro
7A5J J 20 - 78 Show 3D Structure View in InterPro
7A5K J3 20 - 78 Show 3D Structure View in InterPro
7L08 J 20 - 78 Show 3D Structure View in InterPro
7L20 J 20 - 78 Show 3D Structure View in InterPro
7O9K J 20 - 78 Show 3D Structure View in InterPro
7O9M J 20 - 78 Show 3D Structure View in InterPro
7ODR J 20 - 78 Show 3D Structure View in InterPro
7ODS J 20 - 78 Show 3D Structure View in InterPro
7ODT J 20 - 78 Show 3D Structure View in InterPro
7OF0 J 20 - 78 Show 3D Structure View in InterPro
7OF2 J 20 - 78 Show 3D Structure View in InterPro
7OF3 J 20 - 78 Show 3D Structure View in InterPro
7OF4 J 20 - 78 Show 3D Structure View in InterPro
7OF5 J 20 - 78 Show 3D Structure View in InterPro
7OF6 J 20 - 78 Show 3D Structure View in InterPro
7OF7 J 20 - 78 Show 3D Structure View in InterPro
7OG4 XJ 20 - 78 Show 3D Structure View in InterPro
7OI7 J 20 - 78 Show 3D Structure View in InterPro
7OI8 J 20 - 78 Show 3D Structure View in InterPro
7OI9 J 20 - 78 Show 3D Structure View in InterPro
7OIA J 20 - 78 Show 3D Structure View in InterPro
7OIB J 20 - 78 Show 3D Structure View in InterPro
7OIC J 20 - 78 Show 3D Structure View in InterPro
7OID J 20 - 78 Show 3D Structure View in InterPro
7OIE J 20 - 78 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;