This section gives details of the Pfam domains that are found on the completed proteome of Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10). You can see details of the proteome in UniProt or at NCBI.
|Number of sequences:||1765|
|Number of domains:||2404|
Below is a listing of the unique domain organisations or architectures particular to this proteome. More...
The graphic that is shown by default represents a sequence containing that particular domain organisation or architecture. The images are order by the frequency that the architecture is observed. Each row contains the following information:
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
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This section shows the composition of this proteome, in terms of the Pfam domains which are found on its constituent sequences. More...
Each row of the table shows a Pfam domain that was found on one or more of the sequences from this proteome. The two data columns show:
- number of sequences
- the number of distinct protein sequences from this proteome that are found to have the given Pfam domain present
- the number of times that the Pfam domain occurs throughout this proteome
Finally, the 'View graphics' and 'View alignment' columns allow you to view the sequences for a given domain either as a set of Pfam graphics, one per sequence, or as a sequence alignment. The domain graphics and sequence alignment are shown in a separate browser window.
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