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1  structure 2  species 0  interactions 20  sequences 2  architectures

Structure: 1VYH

Summary

1vyh
PDB entry 1vyh: PAF-AH Holoenzyme: Lis1/Alfa2
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PDB entry 1vyh

Paf-ah holoenzyme: lis1/alfa2

Experiment type: X-ray diffraction, resolution 3.40Å
Release date: 2011-07-13
Authors: Tarricone, C., Perrina, F., Monzani, S., Massimiliano, L., Knapp, S., Tsai, L.-H., Derewenda, Z.S., Musacchio, A.
Species: Homo sapiens (Human), Mus musculus (Mouse)

PDBprint

Below is the PDBprint for entry 1vyh.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
B 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
C 100 136 P63005 100 136 WD40 (PF00400)
C 140 178 P63005 140 178 WD40 (PF00400)
C 182 220 P63005 182 220 WD40 (PF00400)
C 224 262 P63005 224 262 WD40 (PF00400)
C 266 324 P63005 266 324 WD40 (PF00400)
C 328 366 P63005 328 366 WD40 (PF00400)
C 370 408 P63005 370 408 WD40 (PF00400)
D 100 136 P63005 100 136 WD40 (PF00400)
D 140 178 P63005 140 178 WD40 (PF00400)
D 182 220 P63005 182 220 WD40 (PF00400)
D 224 262 P63005 224 262 WD40 (PF00400)
D 266 324 P63005 266 324 WD40 (PF00400)
D 328 366 P63005 328 366 WD40 (PF00400)
D 370 408 P63005 370 408 WD40 (PF00400)
E 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
F 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
G 100 136 P63005 100 136 WD40 (PF00400)
G 140 178 P63005 140 178 WD40 (PF00400)
G 182 220 P63005 182 220 WD40 (PF00400)
G 224 262 P63005 224 262 WD40 (PF00400)
G 266 324 P63005 266 324 WD40 (PF00400)
G 328 366 P63005 328 366 WD40 (PF00400)
G 370 408 P63005 370 408 WD40 (PF00400)
H 100 136 P63005 100 136 WD40 (PF00400)
H 140 178 P63005 140 178 WD40 (PF00400)
H 182 220 P63005 182 220 WD40 (PF00400)
H 224 262 P63005 224 262 WD40 (PF00400)
H 266 324 P63005 266 324 WD40 (PF00400)
H 328 366 P63005 328 366 WD40 (PF00400)
H 370 408 P63005 370 408 WD40 (PF00400)
I 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
J 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
K 100 136 P63005 100 136 WD40 (PF00400)
K 140 178 P63005 140 178 WD40 (PF00400)
K 182 220 P63005 182 220 WD40 (PF00400)
K 224 262 P63005 224 262 WD40 (PF00400)
K 266 324 P63005 266 324 WD40 (PF00400)
K 328 366 P63005 328 366 WD40 (PF00400)
K 370 408 P63005 370 408 WD40 (PF00400)
L 100 136 P63005 100 136 WD40 (PF00400)
L 140 178 P63005 140 178 WD40 (PF00400)
L 182 220 P63005 182 220 WD40 (PF00400)
L 224 262 P63005 224 262 WD40 (PF00400)
L 266 324 P63005 266 324 WD40 (PF00400)
L 328 366 P63005 328 366 WD40 (PF00400)
L 370 408 P63005 370 408 WD40 (PF00400)
M 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
N 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
O 100 136 P63005 100 136 WD40 (PF00400)
O 140 178 P63005 140 178 WD40 (PF00400)
O 182 220 P63005 182 220 WD40 (PF00400)
O 224 262 P63005 224 262 WD40 (PF00400)
O 266 324 P63005 266 324 WD40 (PF00400)
O 328 366 P63005 328 366 WD40 (PF00400)
O 370 408 P63005 370 408 WD40 (PF00400)
P 100 136 P63005 100 136 WD40 (PF00400)
P 140 178 P63005 140 178 WD40 (PF00400)
P 182 220 P63005 182 220 WD40 (PF00400)
P 224 262 P63005 224 262 WD40 (PF00400)
P 266 324 P63005 266 324 WD40 (PF00400)
P 328 366 P63005 328 366 WD40 (PF00400)
P 370 408 P63005 370 408 WD40 (PF00400)
Q 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
R 44 204 P68402 44 204 Lipase_GDSL_2 (PF13472)
S 100 136 P63005 100 136 WD40 (PF00400)
S 140 178 P63005 140 178 WD40 (PF00400)
S 182 220 P63005 182 220 WD40 (PF00400)
S 224 262 P63005 224 262 WD40 (PF00400)
S 266 324 P63005 266 324 WD40 (PF00400)
S 328 366 P63005 328 366 WD40 (PF00400)
S 370 408 P63005 370 408 WD40 (PF00400)
T 100 136 P63005 100 136 WD40 (PF00400)
T 140 178 P63005 140 178 WD40 (PF00400)
T 182 220 P63005 182 220 WD40 (PF00400)
T 224 262 P63005 224 262 WD40 (PF00400)
T 266 324 P63005 266 324 WD40 (PF00400)
T 328 366 P63005 328 366 WD40 (PF00400)
T 370 408 P63005 370 408 WD40 (PF00400)

Note: This mapping was provided by the PDBe group.

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