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1  structure 1  species 0  interactions 38  sequences 10  architectures

Structure: 5A9Q

Summary

5a9q
PDB entry 5a9q: Human nuclear pore complex
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PDB entry 5a9q

Human nuclear pore complex

Experiment type: Electron Microscopy, resolution 23.00Å
Release date: 2017-08-23
Authors: von Appen, A., Kosinski, J., Sparks, L., Ori, A., DiGuilio, A., Vollmer, B., Mackmull, M., Banterle, N., Parca, L., Kastritis, P., Buczak, K., Mosalaganti, S., Hagen, W., Andres-Pons, A., Lemke, E.A., Bork, P., Antonin, W., Glavy, J.S., Bui, K.H., Beck, M.
Species: Homo sapiens (Human)

PDBprint

Below is the PDBprint for entry 5a9q.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
n/a 207 246 Q8NFH3 207 246 WD40 (PF00400)
1 62 577 Q12769 62 577 Nup160 (PF11715)
2 114 153 Q8NFH4 114 153 WD40 (PF00400)
3 596 1024 Q8WUM0 596 1024 Nucleoporin_C (PF03177)
4 209 908 P57740 209 908 Nup84_Nup100 (PF04121)
5 452 743 P52948 1332 1623 Nup96 (PF12110)
6 14 41 P55735 14 41 WD40 (PF00400)
6 47 87 P55735 47 87 WD40 (PF00400)
6 93 131 P55735 93 131 WD40 (PF00400)
6 202 244 P55735 202 244 WD40 (PF00400)
6 254 290 P55735 254 290 WD40 (PF00400)
7 5 40 Q96EE3 5 40 WD40 (PF00400)
7 268 306 Q96EE3 268 306 WD40 (PF00400)
8 53 475 Q9BW27 53 475 Nucleopor_Nup85 (PF07575)
9 207 246 Q8NFH3 207 246 WD40 (PF00400)
a 62 577 Q12769 62 577 Nup160 (PF11715)
A 77 510 O75694 77 510 Nucleoporin_N (PF08801)
A 769 1200 O75694 769 1200 Nucleoporin_C (PF03177)
B 77 510 O75694 77 510 Nucleoporin_N (PF08801)
b 114 153 Q8NFH4 114 153 WD40 (PF00400)
B 769 1200 O75694 769 1200 Nucleoporin_C (PF03177)
C 596 1024 Q8WUM0 596 1024 Nucleoporin_C (PF03177)
D 209 908 P57740 209 908 Nup84_Nup100 (PF04121)
E 452 743 P52948 1332 1623 Nup96 (PF12110)
F 14 41 P55735 14 41 WD40 (PF00400)
F 47 87 P55735 47 87 WD40 (PF00400)
F 93 131 P55735 93 131 WD40 (PF00400)
F 202 244 P55735 202 244 WD40 (PF00400)
F 254 290 P55735 254 290 WD40 (PF00400)
G 5 40 Q96EE3 5 40 WD40 (PF00400)
G 268 306 Q96EE3 268 306 WD40 (PF00400)
H 53 475 Q9BW27 53 475 Nucleopor_Nup85 (PF07575)
I 207 246 Q8NFH3 207 246 WD40 (PF00400)
J 62 577 Q12769 62 577 Nup160 (PF11715)
K 114 153 Q8NFH4 114 153 WD40 (PF00400)
L 596 1024 Q8WUM0 596 1024 Nucleoporin_C (PF03177)
M 209 908 P57740 209 908 Nup84_Nup100 (PF04121)
N 452 743 P52948 1332 1623 Nup96 (PF12110)
O 14 41 P55735 14 41 WD40 (PF00400)
O 47 87 P55735 47 87 WD40 (PF00400)
O 93 131 P55735 93 131 WD40 (PF00400)
O 202 244 P55735 202 244 WD40 (PF00400)
O 254 290 P55735 254 290 WD40 (PF00400)
P 5 40 Q96EE3 5 40 WD40 (PF00400)
P 268 306 Q96EE3 268 306 WD40 (PF00400)
Q 53 475 Q9BW27 53 475 Nucleopor_Nup85 (PF07575)
R 207 246 Q8NFH3 207 246 WD40 (PF00400)
S 62 577 Q12769 62 577 Nup160 (PF11715)
T 114 153 Q8NFH4 114 153 WD40 (PF00400)
U 596 1024 Q8WUM0 596 1024 Nucleoporin_C (PF03177)
V 209 908 P57740 209 908 Nup84_Nup100 (PF04121)
W 452 743 P52948 1332 1623 Nup96 (PF12110)
X 14 41 P55735 14 41 WD40 (PF00400)
X 47 87 P55735 47 87 WD40 (PF00400)
X 93 131 P55735 93 131 WD40 (PF00400)
X 202 244 P55735 202 244 WD40 (PF00400)
X 254 290 P55735 254 290 WD40 (PF00400)
Y 5 40 Q96EE3 5 40 WD40 (PF00400)
Y 268 306 Q96EE3 268 306 WD40 (PF00400)
Z 53 475 Q9BW27 53 475 Nucleopor_Nup85 (PF07575)

Note: This mapping was provided by the PDBe group.

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