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Structure: 5FKU

Summary

5fku
PDB entry 5fku: cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex)
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PDB entry 5fku

Cryo-em structure of the e. coli replicative dna polymerase complex in dna free state (dna polymerase iii alpha, beta, epsilon, tau complex)

Experiment type: Electron Microscopy, resolution 8.34Å
Release date: 2019-05-08
Authors: Fernandez-Leiro, R., Conrad, J., Scheres, S.H.W., Lamers, M.H.
Species: Escherichia coli (strain K12)

PDBprint

Below is the PDBprint for entry 5fku.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 8 173 P10443 8 173 PHP (PF02811)
A 290 558 P10443 290 558 DNA_pol3_alpha (PF07733)
A 561 735 P10443 561 735 DNA_pol3_finger (PF17657)
A 808 898 P10443 808 898 HHH_6 (PF14579)
A 994 1073 P10443 994 1073 tRNA_anti-codon (PF01336)
B 1 120 P0A988 1 120 DNA_pol3_beta (PF00712)
B 129 243 P0A988 129 243 DNA_pol3_beta_2 (PF02767)
B 245 365 P0A988 245 365 DNA_pol3_beta_3 (PF02768)
C 1 120 P0A988 1 120 DNA_pol3_beta (PF00712)
C 129 243 P0A988 129 243 DNA_pol3_beta_2 (PF02767)
C 245 365 P0A988 245 365 DNA_pol3_beta_3 (PF02768)
D 9 175 P03007 9 175 RNase_T (PF00929)
E 504 623 P06710 504 623 DNA_pol3_tau_5 (PF12170)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5fku in InterPro