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Structure: 5GAP

Summary

5gap
PDB entry 5gap: Body region of the U4/U6.U5 tri-snRNP
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PDB entry 5gap

Body region of the u4/u6.u5 tri-snrnp

Experiment type: Electron Microscopy, resolution 3.60Å
Release date: 2019-10-02
Authors: Nguyen, T.H.D., Galej, W.P., Oubridge, C., Bai, X.C., Newman, A., Scheres, S., Nagai, K.
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

PDBprint

Below is the PDBprint for entry 5gap.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 751 874 P33334 751 874 PROCN (PF08083)
A 1059 1150 P33334 1059 1150 RRM_4 (PF10598)
A 1282 1415 P33334 1282 1415 U5_2-snRNA_bdg (PF10597)
A 1514 1672 P33334 1514 1672 U6-snRNA_bdg (PF10596)
A 1832 2061 P33334 1832 2061 PRP8_domainIV (PF12134)
B 363 389 P32639 363 389 Helicase_PWI (PF18149)
D 5 137 Q06819 5 137 DIM1 (PF02966)
F 101 343 P49704 101 343 Nop (PF01798)
F 350 457 P49704 350 457 Prp31_C (PF09785)
G 150 318 Q03338 150 318 PRP3 (PF08572)
G 340 467 Q03338 340 467 DUF1115 (PF06544)
H 255 293 P20053 255 293 WD40 (PF00400)
H 298 335 P20053 298 335 WD40 (PF00400)
H 339 377 P20053 339 377 WD40 (PF00400)
H 427 465 P20053 427 465 WD40 (PF00400)
K 18 112 P39990 18 112 Ribosomal_L7Ae (PF01248)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5gap in InterPro