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1  structure 1  species 0  interactions 17  sequences 17  architectures

Structure: 5W66

Summary

5w66
PDB entry 5w66: RNA polymerase I Initial Transcribing Complex State 3
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PDB entry 5w66

Rna polymerase i initial transcribing complex state 3

Experiment type: Electron Microscopy, resolution 3.90Å
Release date: 2019-11-27
Authors: Han, Y., He, Y.
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

PDBprint

Below is the PDBprint for entry 5w66.

External database links

Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
A 8 471 P10964 8 471 RNA_pol_Rpb1_1 (PF04997)
A 473 653 P10964 473 653 RNA_pol_Rpb1_2 (PF00623)
A 656 833 P10964 656 833 RNA_pol_Rpb1_3 (PF04983)
A 863 982 P10964 863 982 RNA_pol_Rpb1_4 (PF05000)
A 989 1611 P10964 989 1611 RNA_pol_Rpb1_5 (PF04998)
B 40 459 P22138 40 459 RNA_pol_Rpb2_1 (PF04563)
B 210 403 P22138 210 403 RNA_pol_Rpb2_2 (PF04561)
B 486 551 P22138 486 551 RNA_pol_Rpb2_3 (PF04565)
B 593 651 P22138 593 651 RNA_pol_Rpa2_4 (PF06883)
B 700 1065 P22138 700 1065 RNA_pol_Rpb2_6 (PF00562)
B 1067 1196 P22138 1067 1196 RNA_pol_Rpb2_7 (PF04560)
C 53 325 P07703 53 325 RNA_pol_L (PF01193)
C 83 220 P07703 83 220 RNA_pol_A_bac (PF01000)
D 15 100 P50106 15 100 RNA_polI_A14 (PF08203)
E 6 100 P20434 6 100 RNA_pol_Rpb5_N (PF03871)
E 142 214 P20434 142 214 RNA_pol_Rpb5_C (PF01191)
F 79 132 P20435 79 132 RNA_pol_Rpb6 (PF01192)
G 44 112 P46669 44 112 SHS2_Rpb7-N (PF03876)
G 127 250 P46669 127 250 RPA43_OB (PF17875)
H 7 146 P20436 7 146 RNA_pol_Rpb8 (PF03870)
I 7 42 P32529 7 42 RNA_POL_M_15KD (PF02150)
J 2 60 P22139 2 60 RNA_pol_N (PF01194)
K 60 134 P28000 60 134 RNA_pol_L_2 (PF13656)
L 29 60 P40422 29 60 DNA_RNApol_7kD (PF03604)
M 33 403 Q01080 33 403 RNA_pol_I_A49 (PF06870)
N 48 180 P47006 48 180 RNA_polI_A34 (PF08208)
O 175 780 P32786 175 780 Rrn6 (PF10214)
Q 173 383 Q04712 173 383 RNA_pol_I_TF (PF04090)

Note: This mapping was provided by the PDBe group.

View structure

View Pfam families and other data mapped to the structure of PDB entry 5w66 in InterPro