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2  structures 4065  species 0  interactions 18870  sequences 92  architectures

Clan: AsmA-like (CL0401)


AsmA-like OmpF regulator protein superfamily Add an annotation

Families in this collection are AsmA-like. Mutations in the AsmA gene restore the assembly of OmpF, a trimeric outer membrane porin from E coli and related bacteria necessary for the cytotoxic action of group-A colicins.

This clan contains 6 families and the total number of domains in the clan is 18870. The clan was built by A Bateman.


This clan contains the following 6 member families:

AsmA AsmA_1 AsmA_2 DUF3971 DUF748 TamB

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
TamB (PF04357) 4984 (26.4%) View
AsmA_2 (PF13502) 4440 (23.5%) View
AsmA (PF05170) 4226 (22.4%) View
DUF748 (PF05359) 3023 (16.0%) View
DUF3971 (PF13116) 2072 (11.0%) View
AsmA_1 (PF13109) 125 (0.7%) View
Total: 6 Total: 18870 Clan alignment

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...



For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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