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3661  structures 9062  species 0  interactions 309820  sequences 8178  architectures

Clan: Ubiquitin (CL0072)

Summary

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
ubiquitin (PF00240) 47633 (15.4%) View
SLBB (PF10531) 23230 (7.5%) View
TGS (PF02824) 21334 (6.9%) View
RA (PF00788) 18419 (5.9%) View
PB1 (PF00564) 15036 (4.9%) View
ThiS (PF02597) 14622 (4.7%) View
FERM_N (PF09379) 14420 (4.7%) View
Oxidored_molyb (PF00174) 13694 (4.4%) View
UBX (PF00789) 11034 (3.6%) View
YchF-GTPase_C (PF06071) 10061 (3.2%) View
AUX_IAA (PF02309) 9544 (3.1%) View
Flg_new (PF09479) 7791 (2.5%) View
Flg_new_2 (PF18998) 6186 (2.0%) View
DCX (PF03607) 6162 (2.0%) View
Rad60-SLD (PF11976) 5439 (1.8%) View
DUF348 (PF03990) 5151 (1.7%) View
ATG8 (PF02991) 4642 (1.5%) View
USP7_C2 (PF14533) 3811 (1.2%) View
USP7_ICP0_bdg (PF12436) 3613 (1.2%) View
RBD (PF02196) 3352 (1.1%) View
Crinkler (PF20147) 3300 (1.1%) View
PI3K_rbd (PF00794) 2947 (1.0%) View
DIX (PF00778) 2902 (0.9%) View
NLE (PF08154) 2865 (0.9%) View
Ubiquitin_2 (PF14560) 2804 (0.9%) View
RAWUL (PF16207) 2371 (0.8%) View
Rad60-SLD_2 (PF13881) 2275 (0.7%) View
DWNN (PF08783) 2176 (0.7%) View
DUF4430 (PF14478) 1892 (0.6%) View
Par3_HAL_N_term (PF12053) 1836 (0.6%) View
YukD (PF08817) 1831 (0.6%) View
MucBP (PF06458) 1785 (0.6%) View
APG5 (PF04106) 1755 (0.6%) View
Ub-RnfH (PF03658) 1584 (0.5%) View
Ubiquitin_3 (PF14836) 1570 (0.5%) View
FERM_N_2 (PF18038) 1544 (0.5%) View
CIDE-N (PF02017) 1478 (0.5%) View
SAP18 (PF06487) 1470 (0.5%) View
CRIM (PF16978) 1455 (0.5%) View
continued
Pfam family Num. domains Alignment
Sde2_N_Ubi (PF13019) 1432 (0.5%) View
Urm1 (PF09138) 1412 (0.5%) View
APG12 (PF04110) 1391 (0.4%) View
PI3K_p85B (PF02192) 1381 (0.4%) View
NQRA_SLBB (PF11973) 1363 (0.4%) View
Kindlin_2_N (PF18124) 1356 (0.4%) View
FERM_f0 (PF16511) 1295 (0.4%) View
TUG-UBL1 (PF11470) 1092 (0.4%) View
Formin_GBD_N (PF18382) 1087 (0.4%) View
UN_NPL4 (PF11543) 1028 (0.3%) View
Cobl (PF09469) 1023 (0.3%) View
Ubiquitin_4 (PF18036) 975 (0.3%) View
ULD (PF16534) 970 (0.3%) View
Muc_B2 (PF17966) 879 (0.3%) View
Ub-Mut7C (PF14451) 848 (0.3%) View
TBK1_ULD (PF18396) 832 (0.3%) View
Ufm1 (PF03671) 738 (0.2%) View
Ras_bdg_2 (PF14847) 721 (0.2%) View
DUF2407 (PF10302) 669 (0.2%) View
Caps_synth_GfcC (PF06251) 542 (0.2%) View
Multi_ubiq (PF14452) 475 (0.2%) View
MucBP_2 (PF17965) 469 (0.2%) View
Blt1 (PF12754) 424 (0.1%) View
GABP-alpha (PF11620) 380 (0.1%) View
Ubiquitin_5 (PF18037) 375 (0.1%) View
Lambda_tail_I (PF06805) 324 (0.1%) View
Tugs (PF17840) 286 (0.1%) View
Prok_Ub (PF14454) 225 (0.1%) View
Phenol_monoox (PF04663) 209 (0.1%) View
SHIRT (PF18655) 197 (0.1%) View
ThiS-like (PF14453) 146 (0.0%) View
SSSPR-51 (PF18877) 91 (0.0%) View
TmoB (PF06234) 90 (0.0%) View
BILBO1_N (PF18281) 30 (0.0%) View
Staphylokinase (PF02821) 22 (0.0%) View
IgG_binding_B (PF01378) 21 (0.0%) View
CHIPS (PF11434) 8 (0.0%) View
B1 (PF02246) 0 (0.0%) View
Total: 77 Total: 309820
No alignment ℹ
 

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Family relationships

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Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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