Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
69  structures 775  species 0  interactions 23336  sequences 1017  architectures

Family: 7tm_2 (PF00002)

Summary: 7 transmembrane receptor (Secretin family)

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

This is the Wikipedia entry entitled "Secretin receptor family". More...

Secretin receptor family Edit Wikipedia article

This page is based on a Wikipedia article. The text is available under the Creative Commons Attribution/Share-Alike License.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

7 transmembrane receptor (Secretin family) Provide feedback

This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs).They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognised. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97 (P48960); calcium-independent receptors for latrotoxin (such as O94910), and brain-specific angiogenesis inhibitors (such as O14514) amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins (e.g. P83119). Other than the typical seven-transmembrane region, characteristic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling [1].

Literature references

  1. Harmar AJ; , Genome Biol 2001;2:REVIEWS3013.: Family-B G-protein-coupled receptors. PUBMED:11790261 EPMC:11790261


Internal database links

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR000832

The secretin-like GPCRs include secretin [ PUBMED:1646711 ], calcitonin [ PUBMED:1658940 ], parathyroid hormone/parathyroid hormone-related peptides [ PUBMED:1658941 ] and vasoactive intestinal peptide [ PUBMED:1314625 ], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N-terminal is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allows the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products.

G protein-coupled receptors (GPCRs) constitute a vast protein family that encompasses a wide range of functions, including various autocrine, paracrine and endocrine processes. They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups [ PUBMED:12679517 ]. The term clan can be used to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence [ PUBMED:8170923 ]. The currently known clan members include rhodopsin-like GPCRs (Class A, GPCRA), secretin-like GPCRs (Class B, GPCRB), metabotropic glutamate receptor family (Class C, GPCRC), fungal mating pheromone receptors (Class D, GPCRD), cAMP receptors (Class E, GPCRE) and frizzled/smoothened (Class F, GPCRF) [ PUBMED:8170923 , PUBMED:8081729 , PUBMED:15914470 , PUBMED:18948278 , PUBMED:16753280 ]. GPCRs are major drug targets, and are consequently the subject of considerable research interest. It has been reported that the repertoire of GPCRs for endogenous ligands consists of approximately 400 receptors in humans and mice [ PUBMED:12679517 ]. Most GPCRs are identified on the basis of their DNA sequences, rather than the ligand they bind, those that are unmatched to known natural ligands are designated by as orphan GPCRs, or unclassified GPCRs [ PUBMED:23020293 ].

Gene Ontology

The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

Loading domain graphics...

Pfam Clan

This family is a member of clan GPCR_A (CL0192), which has the following description:

This clan contains various seven-transmembrane receptors and related proteins. A major member is Pfam:PF00001, members of which have been considered to be typical members of the rhodopsin superfamily. Many members of this clan are Caenorhabditis proteins, suggesting great expansion of the relevant families in these nematode worms.

The clan contains the following 45 members:

7TM-7TMR_HD 7tm_1 7tm_2 7tm_3 7tm_4 7TM_GPCR_Sra 7TM_GPCR_Srab 7TM_GPCR_Srb 7TM_GPCR_Srbc 7TM_GPCR_Srd 7TM_GPCR_Srh 7TM_GPCR_Sri 7TM_GPCR_Srj 7TM_GPCR_Srsx 7TM_GPCR_Srt 7TM_GPCR_Sru 7TM_GPCR_Srv 7TM_GPCR_Srw 7TM_GPCR_Srx 7TM_GPCR_Srz 7TM_GPCR_Str 7TMR-DISM_7TM Bac_rhodopsin Ceramidase Dicty_CAR DUF1182 DUF3522 DUF621 Frizzled Git3 GpcrRhopsn4 GPR_Gpa2_C Heliorhodopsin HisKA_7TM HlyIII Lung_7-TM_R Ocular_alb Per1 Pombe_5TM Serpentine_r_xa SID-1_RNA_chan Sre Srg TAS2R V1R

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

View options

We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(28)
Full
(23336)
Representative proteomes UniProt
(38714)
RP15
(3528)
RP35
(8401)
RP55
(19885)
RP75
(26885)
Jalview View  View  View  View  View  View  View 
HTML View             
PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(28)
Full
(23336)
Representative proteomes UniProt
(38714)
RP15
(3528)
RP35
(8401)
RP55
(19885)
RP75
(26885)
Alignment:
Format:
Order:
Sequence:
Gaps:
Download/view:

Download options

We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(28)
Full
(23336)
Representative proteomes UniProt
(38714)
RP15
(3528)
RP35
(8401)
RP55
(19885)
RP75
(26885)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Prosite
Previous IDs: none
Type: Family
Sequence Ontology: SO:0100021
Author: Sonnhammer ELL
Number in seed: 28
Number in full: 23336
Average length of the domain: 226.40 aa
Average identity of full alignment: 24 %
Average coverage of the sequence by the domain: 25.39 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 20.6 20.6
Trusted cut-off 20.6 20.6
Noise cut-off 20.5 20.5
Model length: 246
Family (HMM) version: 26
Download: download the raw HMM for this family

Species distribution

Sunburst controls

Hide

Weight segments by...


Change the size of the sunburst

Small
Large

Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

Align selected sequences to HMM

Generate a FASTA-format file

Clear selection

This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

Loading sunburst data...

Tree controls

Hide

The tree shows the occurrence of this domain across different species. More...

Loading...

Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the 7tm_2 domain has been found. There are 69 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein sequence.

Loading structure mapping...

AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A096MKI0 View 3D Structure Click here
A0A0G2JSI4 View 3D Structure Click here
A0A0G2JSN6 View 3D Structure Click here
A0A0G2JST1 View 3D Structure Click here
A0A0G2JSU2 View 3D Structure Click here
A0A0G2JXP6 View 3D Structure Click here
A0A0G2K4I3 View 3D Structure Click here
A0A0G2K538 View 3D Structure Click here
A0A0G2L5R5 View 3D Structure Click here
A0A0R4IAT2 View 3D Structure Click here
A0A0R4IKR9 View 3D Structure Click here
A0A140LGW6 View 3D Structure Click here
A0A286YB45 View 3D Structure Click here
A0A2R8PX08 View 3D Structure Click here
A0A2R8Q3H9 View 3D Structure Click here
A0A2R8Q5D8 View 3D Structure Click here
A0A2R8Q5E9 View 3D Structure Click here
A0A2R8QD59 View 3D Structure Click here
A0A2R8QFT9 View 3D Structure Click here
A0A2R8QJ82 View 3D Structure Click here
A0A2R8QKH4 View 3D Structure Click here
A0A2R8QM07 View 3D Structure Click here
A0A2R8QMH5 View 3D Structure Click here
A0A2R8QN46 View 3D Structure Click here
A0A2R8QP79 View 3D Structure Click here
A0A2R8RSB8 View 3D Structure Click here
A1Z9Q8 View 3D Structure Click here
A9Y366 View 3D Structure Click here
B0S4Y6 View 3D Structure Click here
C0HL12 View 3D Structure Click here
C6KFA3 View 3D Structure Click here
D3ZF17 View 3D Structure Click here
D3ZN99 View 3D Structure Click here
D3ZTY4 View 3D Structure Click here
D4A3T6 View 3D Structure Click here
D4A831 View 3D Structure Click here
D4AAI8 View 3D Structure Click here
D4ADC7 View 3D Structure Click here
E2QCM9 View 3D Structure Click here
E2QCS3 View 3D Structure Click here
E7F1D8 View 3D Structure Click here
E7F1E5 View 3D Structure Click here
E7F287 View 3D Structure Click here
E7F2K6 View 3D Structure Click here
E7F4F2 View 3D Structure Click here
E7F9Q0 View 3D Structure Click here
E7FB43 View 3D Structure Click here
E7FBY6 View 3D Structure Click here
E7FCX8 View 3D Structure Click here
E7FD86 View 3D Structure Click here
E7FEH0 View 3D Structure Click here
E7FF72 View 3D Structure Click here
E7FF76 View 3D Structure Click here
E7FF79 View 3D Structure Click here
E9Q4J9 View 3D Structure Click here
F1M644 View 3D Structure Click here
F1Q6L7 View 3D Structure Click here
F1Q8H0 View 3D Structure Click here
F1QAE5 View 3D Structure Click here
F1QCG6 View 3D Structure Click here
F1QD99 View 3D Structure Click here
F1QFW7 View 3D Structure Click here
F1QGZ1 View 3D Structure Click here
F1QM06 View 3D Structure Click here
F1QNE5 View 3D Structure Click here
F1QSJ4 View 3D Structure Click here
F1QZM9 View 3D Structure Click here
F1R383 View 3D Structure Click here
F1R3D8 View 3D Structure Click here
F1R4K2 View 3D Structure Click here
F1R788 View 3D Structure Click here
F1R8J2 View 3D Structure Click here
F1R9B1 View 3D Structure Click here
F1RBM7 View 3D Structure Click here
F1RCQ6 View 3D Structure Click here
F8W5I9 View 3D Structure Click here
G5E8Q8 View 3D Structure Click here
G5EBF7 View 3D Structure Click here
G5ECX0 View 3D Structure Click here
G5EDW2 View 3D Structure Click here
I3IRX3 View 3D Structure Click here
M0R7K6 View 3D Structure Click here
O14514 View 3D Structure Click here
O35659 View 3D Structure Click here
O60241 View 3D Structure Click here
O60242 View 3D Structure Click here
O88917 View 3D Structure Click here
O88923 View 3D Structure Click here
O94910 View 3D Structure Click here
O95490 View 3D Structure Click here
O95838 View 3D Structure Click here
O97148 View 3D Structure Click here
P23811 View 3D Structure Click here
P25961 View 3D Structure Click here
P30082 View 3D Structure Click here
P30083 View 3D Structure Click here
P30650 View 3D Structure Click here
P30988 View 3D Structure Click here
P32082 View 3D Structure Click here
P32214 View 3D Structure Click here
P32215 View 3D Structure Click here
P32241 View 3D Structure Click here
P32301 View 3D Structure Click here
P34998 View 3D Structure Click here
P35000 View 3D Structure Click here
P35347 View 3D Structure Click here
P35353 View 3D Structure Click here
P41586 View 3D Structure Click here
P41587 View 3D Structure Click here
P41588 View 3D Structure Click here
P41593 View 3D Structure Click here
P43219 View 3D Structure Click here
P43220 View 3D Structure Click here
P47866 View 3D Structure Click here
P47871 View 3D Structure Click here
P47872 View 3D Structure Click here
P48546 View 3D Structure Click here
P48960 View 3D Structure Click here
P49190 View 3D Structure Click here
P70205 View 3D Structure Click here
P97751 View 3D Structure Click here
Q02643 View 3D Structure Click here
Q02644 View 3D Structure Click here
Q03431 View 3D Structure Click here
Q09460 View 3D Structure Click here
Q0P543 View 3D Structure Click here
Q13324 View 3D Structure Click here
Q14246 View 3D Structure Click here
Q16602 View 3D Structure Click here
Q3UHD1 View 3D Structure Click here
Q3V3Z3 View 3D Structure Click here
Q54J77 View 3D Structure Click here
Q54MC6 View 3D Structure Click here
Q54WN6 View 3D Structure Click here
Q58Y75 View 3D Structure Click here
Q5FVG1 View 3D Structure Click here
Q5FWI2 View 3D Structure Click here
Q5IXF8 View 3D Structure Click here
Q5PR47 View 3D Structure Click here
Q5RHM3 View 3D Structure Click here
Q5RHM5 View 3D Structure Click here
Q5RHM6 View 3D Structure Click here
Q5T601 View 3D Structure Click here
Q5UAW9 View 3D Structure Click here
Q5Y4N8 View 3D Structure Click here
Q60748 View 3D Structure Click here
Q60755 View 3D Structure Click here
Q61549 View 3D Structure Click here
Q61606 View 3D Structure Click here
Q63118 View 3D Structure Click here
Q68EK2 View 3D Structure Click here
Q6F3F9 View 3D Structure Click here
Q6QNK2 View 3D Structure Click here
Q7KV24 View 3D Structure Click here
Q7SY09 View 3D Structure Click here
Q7TT36 View 3D Structure Click here
Q7Z7M1 View 3D Structure Click here
Q80T32 View 3D Structure Click here
Q80TR1 View 3D Structure Click here
Q80TS3 View 3D Structure Click here
Q80ZF8 View 3D Structure Click here
Q86SQ3 View 3D Structure Click here
Q86SQ4 View 3D Structure Click here
Q86SQ6 View 3D Structure Click here
Q86Y34 View 3D Structure Click here
Q8BM96 View 3D Structure Click here
Q8C206 View 3D Structure Click here
Q8C4G9 View 3D Structure Click here
Q8CGM1 View 3D Structure Click here
Q8CJ11 View 3D Structure Click here
Q8CJ12 View 3D Structure Click here
Q8IWK6 View 3D Structure Click here
Q8IZF2 View 3D Structure Click here
Q8IZF3 View 3D Structure Click here
Q8IZF4 View 3D Structure Click here
Q8IZF5 View 3D Structure Click here
Q8IZF7 View 3D Structure Click here
Q8IZP9 View 3D Structure Click here
Q8JZZ7 View 3D Structure Click here
Q8K209 View 3D Structure Click here
Q8K3V3 View 3D Structure Click here
Q8R0T6 View 3D Structure Click here
Q8SZ78 View 3D Structure Click here
Q8VEC3 View 3D Structure Click here
Q91V95 View 3D Structure Click here
Q91ZE5 View 3D Structure Click here
Q91ZV8 View 3D Structure Click here
Q923X1 View 3D Structure Click here
Q96K78 View 3D Structure Click here
Q96PE1 View 3D Structure Click here
Q9BY15 View 3D Structure Click here
Q9D2L6 View 3D Structure Click here
Q9ESC1 View 3D Structure Click here
Q9HAR2 View 3D Structure Click here
Q9HBW9 View 3D Structure Click here
Q9PVD3 View 3D Structure Click here
Q9QYP2 View 3D Structure Click here
Q9R1W5 View 3D Structure Click here
Q9UHX3 View 3D Structure Click here
Q9V817 View 3D Structure Click here
Q9V818 View 3D Structure Click here
Q9VA10 View 3D Structure Click here
Q9VRN2 View 3D Structure Click here
Q9VS77 View 3D Structure Click here
Q9VXD9 View 3D Structure Click here
Q9VYH9 View 3D Structure Click here
Q9W0R5 View 3D Structure Click here
Q9W4Y2 View 3D Structure Click here
Q9WVT0 View 3D Structure Click here
Q9Y653 View 3D Structure Click here
Q9Z0M6 View 3D Structure Click here
Q9Z0W0 View 3D Structure Click here
Q9Z173 View 3D Structure Click here
R4GDT3 View 3D Structure Click here
R4GDV7 View 3D Structure Click here
R4GEI0 View 3D Structure Click here
R4GEX5 View 3D Structure Click here
U3JB09 View 3D Structure Click here
X1WFX4 View 3D Structure Click here
X1WHD4 View 3D Structure Click here