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290  structures 1467  species 0  interactions 37986  sequences 1351  architectures

Family: Myosin_head (PF00063)

Summary: Myosin head (motor domain)

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Myosin head (motor domain) Provide feedback

No Pfam abstract.

Literature references

  1. Rayment I, Holden HM, Whittaker M, Yohn CB, Lorenz M, Holmes KC, Milligan RA; , Science 1993;261:58-65.: Structure of the actin-myosin complex and its implications for muscle contraction. PUBMED:8316858 EPMC:8316858


Internal database links

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR001609

Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [ PUBMED:1939027 ], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family [ PUBMED:2806546 ]. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy [ PUBMED:3540939 ]. The 3-D structure of the head portion of myosin has been determined [ PUBMED:8316857 ] and a model for actin-myosin complex has been constructed [ PUBMED:8316858 ].

The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains [ PUBMED:6576334 ]. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [ PUBMED:6576334 ].

Gene Ontology

The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Pfam Clan

This family is a member of clan P-loop_NTPase (CL0023), which has the following description:

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].

The clan contains the following 243 members:

6PF2K AAA AAA-ATPase_like AAA_10 AAA_11 AAA_12 AAA_13 AAA_14 AAA_15 AAA_16 AAA_17 AAA_18 AAA_19 AAA_2 AAA_21 AAA_22 AAA_23 AAA_24 AAA_25 AAA_26 AAA_27 AAA_28 AAA_29 AAA_3 AAA_30 AAA_31 AAA_32 AAA_33 AAA_34 AAA_35 AAA_5 AAA_6 AAA_7 AAA_8 AAA_9 AAA_PrkA ABC_ATPase ABC_tran ABC_tran_Xtn Adeno_IVa2 Adenylsucc_synt ADK AFG1_ATPase AIG1 APS_kinase Arf ArsA_ATPase ATP-synt_ab ATP_bind_1 ATP_bind_2 ATPase ATPase_2 Bac_DnaA BCA_ABC_TP_C Beta-Casp bpMoxR Cas_Csn2 Cas_St_Csn2 CbiA CBP_BcsQ CDC73_C CENP-M CFTR_R CLP1_P CMS1 CoaE CobA_CobO_BtuR CobU cobW CPT CSM2 CTP_synth_N Cytidylate_kin Cytidylate_kin2 DAP3 DBINO DEAD DEAD_2 DLIC DNA_pack_C DNA_pack_N DNA_pol3_delta DNA_pol3_delta2 DnaB_C dNK DO-GTPase1 DO-GTPase2 DUF1611 DUF1726 DUF2075 DUF2326 DUF2478 DUF257 DUF2791 DUF2813 DUF3584 DUF463 DUF5906 DUF6079 DUF815 DUF853 DUF87 DUF927 Dynamin_N Dynein_heavy Elong_Iki1 ELP6 ERCC3_RAD25_C Exonuc_V_gamma FeoB_N Fer4_NifH Flavi_DEAD FTHFS FtsK_SpoIIIE G-alpha Gal-3-0_sulfotr GBP GBP_C GTP_EFTU Gtr1_RagA Guanylate_kin GvpD HDA2-3 Helicase_C Helicase_C_2 Helicase_C_4 Helicase_RecD Herpes_Helicase Herpes_ori_bp Herpes_TK HSA HydF_dimer HydF_tetramer Hydin_ADK IIGP IPPT IPT iSTAND IstB_IS21 KAP_NTPase KdpD Kinase-PPPase Kinesin KTI12 LAP1C Lon_2 LpxK MCM MeaB MEDS Mg_chelatase Microtub_bd MipZ MMR_HSR1 MMR_HSR1_C MobB MukB Mur_ligase_M MutS_V Myosin_head NACHT NAT_N NB-ARC NOG1 NTPase_1 NTPase_P4 OPA1_C ORC3_N P-loop_TraG ParA Parvo_NS1 PAXNEB PduV-EutP PhoH PIF1 Ploopntkinase1 Ploopntkinase2 Ploopntkinase3 Podovirus_Gp16 Polyoma_lg_T_C Pox_A32 PPK2 PPV_E1_C PRK PSY3 Rad17 Rad51 Ras RecA ResIII RHD3 RhoGAP_pG1_pG2 RHSP RNA12 RNA_helicase Roc RsgA_GTPase RuvB_N SbcCD_C SecA_DEAD Septin Sigma54_activ_2 Sigma54_activat SKI SMC_N SNF2-rel_dom Spore_III_AA Spore_IV_A SRP54 SRPRB SulA Sulfotransfer_1 Sulfotransfer_2 Sulfotransfer_3 Sulfotransfer_4 Sulfotransfer_5 Sulphotransf SWI2_SNF2 T2SSE T4SS-DNA_transf Terminase_1 Terminase_3 Terminase_6N Terminase_GpA Thymidylate_kin TIP49 TK TniB Torsin TraG-D_C tRNA_lig_kinase TrwB_AAD_bind TsaE UvrB UvrD-helicase UvrD_C UvrD_C_2 Viral_helicase1 VirC1 VirE YqeC Zeta_toxin Zot

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

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We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(16)
Full
(37986)
Representative proteomes UniProt
(76575)
RP15
(6255)
RP35
(15950)
RP55
(32704)
RP75
(42687)
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PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(16)
Full
(37986)
Representative proteomes UniProt
(76575)
RP15
(6255)
RP35
(15950)
RP55
(32704)
RP75
(42687)
Alignment:
Format:
Order:
Sequence:
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Download options

We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(16)
Full
(37986)
Representative proteomes UniProt
(76575)
RP15
(6255)
RP35
(15950)
RP55
(32704)
RP75
(42687)
Raw Stockholm Download   Download   Download   Download   Download   Download    
Gzipped Download   Download   Download   Download   Download   Download    

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Blastp MYSA_HUMAN/1-840
Previous IDs: myosin_head;
Type: Domain
Sequence Ontology: SO:0000417
Author: Sonnhammer ELL
Number in seed: 16
Number in full: 37986
Average length of the domain: 497.20 aa
Average identity of full alignment: 32 %
Average coverage of the sequence by the domain: 41.23 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 33.3 33.3
Trusted cut-off 33.3 33.3
Noise cut-off 33.2 33.2
Model length: 677
Family (HMM) version: 23
Download: download the raw HMM for this family

Species distribution

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Selections

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Myosin_head domain has been found. There are 290 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein sequence.

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AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A0A1EI90 View 3D Structure Click here
A0A0G2JY53 View 3D Structure Click here
A0A0G2K6E3 View 3D Structure Click here
A0A0G2L354 View 3D Structure Click here
A0A0G2L365 View 3D Structure Click here
A0A0N4STT5 View 3D Structure Click here
A0A0N7KRQ8 View 3D Structure Click here
A0A0P0VRB1 View 3D Structure Click here
A0A0P0W1J8 View 3D Structure Click here
A0A0P0W5T6 View 3D Structure Click here
A0A0P0X7H4 View 3D Structure Click here
A0A0R0E5G3 View 3D Structure Click here
A0A0R0FQM2 View 3D Structure Click here
A0A0R0GUH4 View 3D Structure Click here
A0A0R0H3D7 View 3D Structure Click here
A0A0R0H940 View 3D Structure Click here
A0A0R0HNV9 View 3D Structure Click here
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A0A0R0KQQ4 View 3D Structure Click here
A0A0R4IEQ7 View 3D Structure Click here
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A0A0R4IHN7 View 3D Structure Click here
A0A0R4IIX0 View 3D Structure Click here
A0A0R4IIX0 View 3D Structure Click here
A0A0R4IJY6 View 3D Structure Click here
A0A0R4IPW9 View 3D Structure Click here
A0A0R4J7R2 View 3D Structure Click here
A0A144A488 View 3D Structure Click here
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A0A1D6EAY7 View 3D Structure Click here
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A0A1D6EY50 View 3D Structure Click here
A0A1D6G388 View 3D Structure Click here
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A0A1D6GHG7 View 3D Structure Click here
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A0A1D6GR62 View 3D Structure Click here
A0A1D6HPF7 View 3D Structure Click here
A0A1D6HXR0 View 3D Structure Click here
A0A1D6IFH5 View 3D Structure Click here
A0A1D6IFH5 View 3D Structure Click here
A0A1D6KSI2 View 3D Structure Click here
A0A1D6LCG3 View 3D Structure Click here
A0A1D6MB87 View 3D Structure Click here
A0A1D6MB87 View 3D Structure Click here
A0A1D6MB89 View 3D Structure Click here
A0A1D6MLY6 View 3D Structure Click here
A0A1D6NE40 View 3D Structure Click here
A0A1D6NKQ5 View 3D Structure Click here
A0A1D8PN92 View 3D Structure Click here
A0A286Y9F5 View 3D Structure Click here
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A0A286YBP3 View 3D Structure Click here
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A0A2R8Q3R0 View 3D Structure Click here
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A0A2R8QG39 View 3D Structure Click here
A0A2R8QHZ3 View 3D Structure Click here
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A0A2R8QM44 View 3D Structure Click here
A0A2R8QN33 View 3D Structure Click here
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A5PF48 View 3D Structure Click here
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B0I1T2 View 3D Structure Click here
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B1AR69 View 3D Structure Click here
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B6RK61 View 3D Structure Click here
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E7F106 View 3D Structure Click here
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O62244 View 3D Structure Click here
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P02563 View 3D Structure Click here
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P05661 View 3D Structure Click here
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