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159  structures 4402  species 0  interactions 33427  sequences 6719  architectures

Family: TPR_1 (PF00515)

Summary: Tetratricopeptide repeat

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

This is the Wikipedia entry entitled "Tetratricopeptide". More...

Tetratricopeptide Edit Wikipedia article

  • From a page move: This is a redirect from a page that has been moved (renamed). This page was kept as a redirect to avoid breaking links, both internal and external, that may have been made to the old page name.

This page is based on a Wikipedia article. The text is available under the Creative Commons Attribution/Share-Alike License.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

Tetratricopeptide repeat Provide feedback

No Pfam abstract.

Literature references

  1. Lamb JR, Tugendreich S, Hieter P; , Trends Biochem Sci 1995;20:257-259.: Tetratrico peptide repeat interactions: to TPR or not to TPR? PUBMED:7667876 EPMC:7667876

  2. Das AK, Cohen PW, Barford D; , EMBO J 1998;17:1192-1199.: The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. PUBMED:9482716 EPMC:9482716


Internal database links

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR001440

The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [ PUBMED:7667876 , PUBMED:9482716 , PUBMED:1882418 ]. It mediates protein-protein interactions and the assembly of multiprotein complexes [ PUBMED:14659697 ]. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding [ PUBMED:22404999 ].

The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices [ PUBMED:14659697 ]. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B.

Gene Ontology

The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Pfam Clan

This family is a member of clan TPR (CL0020), which has the following description:

Tetratricopeptide-like repeats are found in a numerous and diverse proteins involved in such functions as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding.

The clan contains the following 176 members:

Adaptin_N Alkyl_sulf_dimr ANAPC3 ANAPC5 ANAPC8 APC_rep API5 Arm Arm_2 Arm_3 Arm_vescicular Atx10homo_assoc B56 BAF250_C BTAD CAS_CSE1 ChAPs CHIP_TPR_N CID CLASP_N Clathrin Clathrin-link Clathrin_H_link Clathrin_propel Cnd1 Cnd3 Coatomer_E Cohesin_HEAT Cohesin_load ComR_TPR COPI_C CPL CRM1_C CRM1_repeat CRM1_repeat_3 Cse1 CTK3 DHR-2 DIL DNA_alkylation Dopey_N Drf_FH3 Drf_GBD DUF1822 DUF2019 DUF2225 DUF3385 DUF3458_C DUF3808 DUF3856 DUF4042 DUF5588 DUF5691 DUF6340 DUF6377 DUF924 EAD11 EST1 EST1_DNA_bind FAT Fis1_TPR_C Fis1_TPR_N Foie-gras_1 GUN4_N HAT HEAT HEAT_2 HEAT_EZ HEAT_PBS HEAT_UF HemY_N HrpB1_HrpK HSM3_C HSM3_N IBB IBN_N IFRD Importin_rep Importin_rep_2 Importin_rep_3 Importin_rep_4 Importin_rep_5 Importin_rep_6 Insc_C KAP Leuk-A4-hydro_C LRV LRV_FeS MA3 MIF4G MIF4G_like MIF4G_like_2 MMS19_C Mo25 MRP-S27 Mtf2 NARP1 Neurochondrin Nipped-B_C Nro1 NSF Paf67 ParcG PC_rep PHAT PI3Ka PknG_TPR PPP5 PPR PPR_1 PPR_2 PPR_3 PPR_long PPTA Proteasom_PSMB PUF Rapsyn_N RIX1 RNPP_C RPM2 RPN7 Sel1 SHNi-TPR SNAP SPO22 SRP_TPR_like ST7 Suf SusD-like SusD-like_2 SusD-like_3 SusD_RagB SYCP2_ARLD TAF6_C TAL_effector TAtT Tcf25 TIP120 TOM20_plant TPR_1 TPR_10 TPR_11 TPR_12 TPR_14 TPR_15 TPR_16 TPR_17 TPR_18 TPR_19 TPR_2 TPR_20 TPR_21 TPR_22 TPR_3 TPR_4 TPR_5 TPR_6 TPR_7 TPR_8 TPR_9 TPR_MalT TTC7_N UNC45-central Upf2 V-ATPase_H_C V-ATPase_H_N Vac14_Fab1_bd Vitellogenin_N Vps39_1 W2 WSLR Wzy_C_2 Xpo1 YcaO_C YfiO Zmiz1_N

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

View options

We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(551)
Full
(33427)
Representative proteomes UniProt
(109233)
RP15
(6106)
RP35
(15940)
RP55
(29321)
RP75
(43975)
Jalview View  View  View  View  View  View  View 
HTML View             
PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(551)
Full
(33427)
Representative proteomes UniProt
(109233)
RP15
(6106)
RP35
(15940)
RP55
(29321)
RP75
(43975)
Alignment:
Format:
Order:
Sequence:
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Download options

We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(551)
Full
(33427)
Representative proteomes UniProt
(109233)
RP15
(6106)
RP35
(15940)
RP55
(29321)
RP75
(43975)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Alignment kindly provided by SMART
Previous IDs: TPR;
Type: Repeat
Sequence Ontology: SO:0001068
Author: SMART
Number in seed: 551
Number in full: 33427
Average length of the domain: 33.70 aa
Average identity of full alignment: 26 %
Average coverage of the sequence by the domain: 8.04 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 27.8 27.8
Trusted cut-off 27.8 27.8
Noise cut-off 27.7 27.7
Model length: 34
Family (HMM) version: 30
Download: download the raw HMM for this family

Species distribution

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Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

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This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the TPR_1 domain has been found. There are 159 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein sequence.

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AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A0G2JZ94 View 3D Structure Click here
A0A0G2K435 View 3D Structure Click here
A0A0N7KMF5 View 3D Structure Click here
A0A0P0WD35 View 3D Structure Click here
A0A0R0HQK4 View 3D Structure Click here
A0A0R0HQK4 View 3D Structure Click here
A0A0R0HQK4 View 3D Structure Click here
A0A0R0HQK4 View 3D Structure Click here
A0A0R0KGG4 View 3D Structure Click here
A0A0R4J5S0 View 3D Structure Click here
A0A144A2J9 View 3D Structure Click here
A0A1D6E560 View 3D Structure Click here
A0A1D6EZA1 View 3D Structure Click here
A0A1D6FA34 View 3D Structure Click here
A0A1D6FLB1 View 3D Structure Click here
A0A1D6H8E1 View 3D Structure Click here
A0A1D6HEP0 View 3D Structure Click here
A0A1D6HKP2 View 3D Structure Click here
A0A1D6HKR0 View 3D Structure Click here
A0A1D6HSP5 View 3D Structure Click here
A0A1D6JVE9 View 3D Structure Click here
A0A1D6KFG4 View 3D Structure Click here
A0A1D6KMF8 View 3D Structure Click here
A0A1D6KMF8 View 3D Structure Click here
A0A1D6KMF8 View 3D Structure Click here
A0A1D6KMF8 View 3D Structure Click here
A0A1D6KMF8 View 3D Structure Click here
A0A1D6KYR0 View 3D Structure Click here
A0A1D6M065 View 3D Structure Click here
A0A1D6N4S9 View 3D Structure Click here
A0A1D6NMA4 View 3D Structure Click here
A0A1D8PN90 View 3D Structure Click here
A0A1D8PN90 View 3D Structure Click here
A0A1D8PRX3 View 3D Structure Click here
A0A1L1SSC7 View 3D Structure Click here
A0A2R8PZ91 View 3D Structure Click here
A0A2R8PZ91 View 3D Structure Click here
A0A3B6UA77 View 3D Structure Click here
A2A6Q5 View 3D Structure Click here
A2A6Q5 View 3D Structure Click here
A4HRQ4 View 3D Structure Click here
A4HTP4 View 3D Structure Click here
A4HTP4 View 3D Structure Click here
A4HTP4 View 3D Structure Click here
A4I5V1 View 3D Structure Click here
A4I5V1 View 3D Structure Click here
A4I5Y0 View 3D Structure Click here
A4I5Y0 View 3D Structure Click here
A4I5Y0 View 3D Structure Click here
A4ICY0 View 3D Structure Click here
B3DNN5 View 3D Structure Click here
B4F8Q0 View 3D Structure Click here
B4FL68 View 3D Structure Click here
B4FQV3 View 3D Structure Click here
B7ZWR6 View 3D Structure Click here
B9DHG0 View 3D Structure Click here
B9FDQ8 View 3D Structure Click here
C0HHW6 View 3D Structure Click here
C0P732 View 3D Structure Click here
C0PH06 View 3D Structure Click here
C4J4W3 View 3D Structure Click here
C6TEB0 View 3D Structure Click here
D3ZUJ8 View 3D Structure Click here
D4A4T0 View 3D Structure Click here
E7FG92 View 3D Structure Click here
F1M369 View 3D Structure Click here
F1Q5X3 View 3D Structure Click here
F1Q8K3 View 3D Structure Click here
F1QD06 View 3D Structure Click here
F1QE50 View 3D Structure Click here
F1QQI6 View 3D Structure Click here
F1R7L2 View 3D Structure Click here
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F1RBN2 View 3D Structure Click here
F1RD24 View 3D Structure Click here
F1RD24 View 3D Structure Click here
F6NMN3 View 3D Structure Click here
G3UYY4 View 3D Structure Click here
G5ECY6 View 3D Structure Click here
I1J9X8 View 3D Structure Click here
I1JCF2 View 3D Structure Click here
I1JEW8 View 3D Structure Click here
I1JGL8 View 3D Structure Click here
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I1JV82 View 3D Structure Click here
I1K0K7 View 3D Structure Click here
I1K1S1 View 3D Structure Click here
I1K2A6 View 3D Structure Click here
I1K9S1 View 3D Structure Click here
I1KDL9 View 3D Structure Click here
I1KLX5 View 3D Structure Click here
I1KT37 View 3D Structure Click here
I1KX76 View 3D Structure Click here
I1KZ20 View 3D Structure Click here
I1KZC7 View 3D Structure Click here
I1LBT2 View 3D Structure Click here
I1LBT2 View 3D Structure Click here
I1LGM2 View 3D Structure Click here
I1LNL6 View 3D Structure Click here
I1LWZ1 View 3D Structure Click here
I1MHE8 View 3D Structure Click here
I1MN29 View 3D Structure Click here
I1MVQ3 View 3D Structure Click here
I1N4V8 View 3D Structure Click here
I1N6L5 View 3D Structure Click here
I1NE04 View 3D Structure Click here
I1NIK8 View 3D Structure Click here
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K7KEL5 View 3D Structure Click here
K7KG28 View 3D Structure Click here
K7KG28 View 3D Structure Click here
K7KG28 View 3D Structure Click here
K7KG28 View 3D Structure Click here
K7KJI6 View 3D Structure Click here
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K7KP47 View 3D Structure Click here
K7KYM0 View 3D Structure Click here
K7KYM0 View 3D Structure Click here
K7LA10 View 3D Structure Click here
K7LBG7 View 3D Structure Click here
K7LEL0 View 3D Structure Click here
K7MB47 View 3D Structure Click here
K7MPF2 View 3D Structure Click here
K7MR42 View 3D Structure Click here
K7MZ97 View 3D Structure Click here
K7MZ97 View 3D Structure Click here
K7MZ97 View 3D Structure Click here
K7MZ97 View 3D Structure Click here
K7TYW1 View 3D Structure Click here
K7VZE6 View 3D Structure Click here
O15294 View 3D Structure Click here
O15294 View 3D Structure Click here
O16259 View 3D Structure Click here
O16259 View 3D Structure Click here
O18158 View 3D Structure Click here
O18158 View 3D Structure Click here
O18158 View 3D Structure Click here
O18158 View 3D Structure Click here
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O35450 View 3D Structure Click here
O35814 View 3D Structure Click here
O35814 View 3D Structure Click here
O35814 View 3D Structure Click here
O35814 View 3D Structure Click here
O43765 View 3D Structure Click here
O43765 View 3D Structure Click here
O60184 View 3D Structure Click here
O70145 View 3D Structure Click here
O70593 View 3D Structure Click here
O70593 View 3D Structure Click here
O77033 View 3D Structure Click here
O88447 View 3D Structure Click here
O88448 View 3D Structure Click here
O94826 View 3D Structure Click here
P07213 View 3D Structure Click here
P10505 View 3D Structure Click here
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P12203 View 3D Structure Click here
P14922 View 3D Structure Click here
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P30416 View 3D Structure Click here
P31948 View 3D Structure Click here
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P33313 View 3D Structure Click here
P35056 View 3D Structure Click here
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P53041 View 3D Structure Click here
P53042 View 3D Structure Click here
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P61843 View 3D Structure Click here
P91189 View 3D Structure Click here
Q02790 View 3D Structure Click here
Q06AN9 View 3D Structure Click here
Q07617 View 3D Structure Click here
Q07866 View 3D Structure Click here
Q0DJZ3 View 3D Structure Click here
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Q10KX6 View 3D Structure Click here
Q12118 View 3D Structure Click here
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Q13217 View 3D Structure Click here
Q13451 View 3D Structure Click here
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Q20683 View 3D Structure Click here
Q21746 View 3D Structure Click here
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Q2FXV7 View 3D Structure Click here
Q2PMU4 View 3D Structure Click here
Q2QML4 View 3D Structure Click here
Q337M8 View 3D Structure Click here
Q38931 View 3D Structure Click here
Q3KRD5 View 3D Structure Click here
Q3V038 View 3D Structure Click here
Q43468 View 3D Structure Click here
Q43468 View 3D Structure Click here
Q4CLR4 View 3D Structure Click here
Q4CLR4 View 3D Structure Click here
Q4CRA7 View 3D Structure Click here
Q4CRA7 View 3D Structure Click here
Q4D0P4 View 3D Structure Click here
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Q4D5Z5 View 3D Structure Click here
Q4D5Z5 View 3D Structure Click here
Q4D8B4 View 3D Structure Click here
Q4DBR3 View 3D Structure Click here
Q4DBR3 View 3D Structure Click here
Q4DCN5 View 3D Structure Click here
Q4DHE6 View 3D Structure Click here
Q4DQF1 View 3D Structure Click here
Q4DQF1 View 3D Structure Click here
Q4DTG4 View 3D Structure Click here
Q4DZK6 View 3D Structure Click here
Q4DZK6 View 3D Structure Click here
Q4E1W0 View 3D Structure Click here
Q4E2I2 View 3D Structure Click here
Q4E5D0 View 3D Structure Click here
Q4V8A2 View 3D Structure Click here
Q4V8A2 View 3D Structure Click here
Q54DA8 View 3D Structure Click here
Q54DA8 View 3D Structure Click here
Q54IP0 View 3D Structure Click here
Q54J83 View 3D Structure Click here
Q54M21 View 3D Structure Click here
Q54NH1 View 3D Structure Click here
Q54NH1 View 3D Structure Click here
Q54QS2 View 3D Structure Click here
Q54VG4 View 3D Structure Click here
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Q54Y27 View 3D Structure Click here
Q56A06 View 3D Structure Click here
Q57711 View 3D Structure Click here
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Q58823 View 3D Structure Click here
Q58823 View 3D Structure Click here
Q5A0I8 View 3D Structure Click here
Q5ADP3 View 3D Structure Click here
Q5ADP3 View 3D Structure Click here
Q5I0X7 View 3D Structure Click here
Q5QNE5 View 3D Structure Click here
Q5RKM3 View 3D Structure Click here
Q5RKM3 View 3D Structure Click here
Q5U2T9 View 3D Structure Click here
Q5U2X2 View 3D Structure Click here
Q5U2X2 View 3D Structure Click here
Q5W6J3 View 3D Structure Click here
Q5XEP2 View 3D Structure Click here
Q5XEP2 View 3D Structure Click here
Q5XF05 View 3D Structure Click here
Q5ZBW3 View 3D Structure Click here
Q60676 View 3D Structure Click here
Q60864 View 3D Structure Click here
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Q61371 View 3D Structure Click here
Q64378 View 3D Structure Click here
Q66H09 View 3D Structure Click here
Q68FQ7 View 3D Structure Click here
Q68FR0 View 3D Structure Click here
Q6H660 View 3D Structure Click here
Q6K5Q1 View 3D Structure Click here
Q6L5C2 View 3D Structure Click here
Q6MG81 View 3D Structure Click here
Q6NXA1 View 3D Structure Click here
Q6NXA1 View 3D Structure Click here
Q6P3J6 View 3D Structure Click here
Q6YZI0 View 3D Structure Click here
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Q6YZI0 View 3D Structure Click here
Q6YZI0 View 3D Structure Click here
Q6Z697 View 3D Structure Click here
Q6ZM24 View 3D Structure Click here
Q75JW7 View 3D Structure Click here
Q75Q39 View 3D Structure Click here
Q7F1F2 View 3D Structure Click here
Q7KJA9 View 3D Structure Click here
Q7XD86 View 3D Structure Click here
Q7XIM1 View 3D Structure Click here
Q7XRB1 View 3D Structure Click here
Q80W98 View 3D Structure Click here
Q80ZX8 View 3D Structure Click here
Q80ZX8 View 3D Structure Click here
Q84JR9 View 3D Structure Click here
Q84XU2 View 3D Structure Click here
Q86TZ1 View 3D Structure Click here
Q86TZ1 View 3D Structure Click here
Q8BG19 View 3D Structure Click here
Q8BJU0 View 3D Structure Click here
Q8BJU0 View 3D Structure Click here
Q8BRH0 View 3D Structure Click here
Q8BW49 View 3D Structure Click here
Q8CGY8 View 3D Structure Click here
Q8CGY8 View 3D Structure Click here
Q8IIP5 View 3D Structure Click here
Q8LGU6 View 3D Structure Click here
Q8N394 View 3D Structure Click here
Q8NBP0 View 3D Structure Click here
Q8NEE8 View 3D Structure Click here
Q8RXN1 View 3D Structure Click here
Q8VD33 View 3D Structure Click here
Q8VZM1 View 3D Structure Click here
Q91YW3 View 3D Structure Click here
Q96301 View 3D Structure Click here
Q96301 View 3D Structure Click here
Q96301 View 3D Structure Click here
Q96301 View 3D Structure Click here
Q96EQ0 View 3D Structure Click here
Q99614 View 3D Structure Click here
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Q9D706 View 3D Structure Click here
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Q9FMA3 View 3D Structure Click here
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Q9H892 View 3D Structure Click here
Q9LV01 View 3D Structure Click here
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