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0  structures 138  species 0  interactions 12085  sequences 81  architectures

Family: Auxin_inducible (PF02519)

Summary: Auxin responsive protein

Pfam includes annotations and additional family information from a range of different sources. These sources can be accessed via the tabs below.

The Pfam group coordinates the annotation of Pfam families in Wikipedia, but we have not yet assigned a Wikipedia article to this family. If you think that a particular Wikipedia article provides good annotation, please let us know.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

Auxin responsive protein Provide feedback

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.

Literature references

  1. Anai T, Kono N, Kosemura S, Yamamura S, Hasegawa K; , DNA Seq 1998;9:329-333.: Isolation and characterization of an auxin-inducible SAUR gene from radish seedlings. PUBMED:10524760 EPMC:10524760


This tab holds annotation information from the InterPro database.

InterPro entry IPR003676

This entry represents a group of plant auxin-responsive proteins, known as small auxin-up RNA (SAUR) [ PUBMED:9278170 ]. The first SAUR gene was originally identified in soybean hypocotyls [ PUBMED:24277197 ]. SAUR genes are mainly expressed in growing hypocotyls or other elongating tissues, implying that they play a role in the regulation of cell elongation [ PUBMED:9278170 ]. SAUR proteins may provide a mechanistic link between auxin and plasma membrane H+-ATPases (PM H+-ATPases) in Arabidopsis thaliana [ PUBMED:24858935 ].

Gene Ontology

The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

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We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(133)
Full
(12085)
Representative proteomes UniProt
(16827)
RP15
(926)
RP35
(6262)
RP55
(9764)
RP75
(13091)
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PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(133)
Full
(12085)
Representative proteomes UniProt
(16827)
RP15
(926)
RP35
(6262)
RP55
(9764)
RP75
(13091)
Alignment:
Format:
Order:
Sequence:
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We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(133)
Full
(12085)
Representative proteomes UniProt
(16827)
RP15
(926)
RP35
(6262)
RP55
(9764)
RP75
(13091)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Pfam-B_1263 (release 5.4)
Previous IDs: none
Type: Family
Sequence Ontology: SO:0100021
Author: Bashton M , Bateman A
Number in seed: 133
Number in full: 12085
Average length of the domain: 95.80 aa
Average identity of full alignment: 31 %
Average coverage of the sequence by the domain: 75.09 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 26.3 26.3
Trusted cut-off 26.3 26.3
Noise cut-off 26.2 25.9
Model length: 90
Family (HMM) version: 16
Download: download the raw HMM for this family

Species distribution

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AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A0N7KJP9 View 3D Structure Click here
A0A0P0VER5 View 3D Structure Click here
A0A0P0VIK8 View 3D Structure Click here
A0A0P0VWA3 View 3D Structure Click here
A0A0P0WER0 View 3D Structure Click here
A0A0P0X0Y9 View 3D Structure Click here
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A0A0R0E366 View 3D Structure Click here
A0A0R0E3Q8 View 3D Structure Click here
A0A0R0EQ57 View 3D Structure Click here
A0A0R0FGZ0 View 3D Structure Click here
A0A0R0FNK0 View 3D Structure Click here
A0A0R0GE70 View 3D Structure Click here
A0A0R0GM55 View 3D Structure Click here
A0A0R0GNN8 View 3D Structure Click here
A0A0R0H0X9 View 3D Structure Click here
A0A0R0H4N5 View 3D Structure Click here
A0A0R0H4P7 View 3D Structure Click here
A0A0R0H4Y0 View 3D Structure Click here
A0A0R0H9R0 View 3D Structure Click here
A0A0R0HBD2 View 3D Structure Click here
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A0A0R0HE48 View 3D Structure Click here
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A0A0R0HEN6 View 3D Structure Click here
A0A0R0HER6 View 3D Structure Click here
A0A0R0HF89 View 3D Structure Click here
A0A0R0HGN4 View 3D Structure Click here
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A0A0R0HSD0 View 3D Structure Click here
A0A0R0HY35 View 3D Structure Click here
A0A0R0I460 View 3D Structure Click here
A0A0R0IBN5 View 3D Structure Click here
A0A0R0IBS0 View 3D Structure Click here
A0A0R0IBT4 View 3D Structure Click here
A0A0R0IHL4 View 3D Structure Click here
A0A0R0IIF7 View 3D Structure Click here
A0A0R0IJ57 View 3D Structure Click here
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A0A0R0JI44 View 3D Structure Click here
A0A0R0JM02 View 3D Structure Click here
A0A0R0JMI9 View 3D Structure Click here
A0A0R0JUM8 View 3D Structure Click here
A0A0R0JWB8 View 3D Structure Click here
A0A0R0K1Q9 View 3D Structure Click here
A0A0R0K283 View 3D Structure Click here
A0A0R0KE59 View 3D Structure Click here
A0A0R0KIA5 View 3D Structure Click here
A0A0R0KWC4 View 3D Structure Click here
A0A0R0LCV3 View 3D Structure Click here
A0A0R4J2G8 View 3D Structure Click here
A0A0R4J313 View 3D Structure Click here
A0A0R4J419 View 3D Structure Click here
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A0A0R4J469 View 3D Structure Click here
A0A0R4J4N8 View 3D Structure Click here
A0A0R4J4P6 View 3D Structure Click here
A0A0R4J4Q2 View 3D Structure Click here
A0A0R4J4Q4 View 3D Structure Click here
A0A178W1I1 View 3D Structure Click here
A0A1D6DUT4 View 3D Structure Click here
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A0A1D6DZB1 View 3D Structure Click here
A0A1D6DZC6 View 3D Structure Click here
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A0A1D6E4M6 View 3D Structure Click here
A0A1D6E5Z9 View 3D Structure Click here
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A0A1D6EGD6 View 3D Structure Click here
A0A1D6EQW9 View 3D Structure Click here
A0A1D6ESV6 View 3D Structure Click here
A0A1D6EUC2 View 3D Structure Click here
A0A1D6EUC3 View 3D Structure Click here
A0A1D6EUC7 View 3D Structure Click here
A0A1D6EUC9 View 3D Structure Click here
A0A1D6EUD1 View 3D Structure Click here
A0A1D6FCP3 View 3D Structure Click here
A0A1D6FTK6 View 3D Structure Click here
A0A1D6FTK7 View 3D Structure Click here
A0A1D6G575 View 3D Structure Click here
A0A1D6GG82 View 3D Structure Click here
A0A1D6GL11 View 3D Structure Click here
A0A1D6GV22 View 3D Structure Click here
A0A1D6GWA2 View 3D Structure Click here
A0A1D6H1F8 View 3D Structure Click here
A0A1D6H346 View 3D Structure Click here
A0A1D6H914 View 3D Structure Click here
A0A1D6HEN0 View 3D Structure Click here
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A0A1D6I555 View 3D Structure Click here
A0A1D6I664 View 3D Structure Click here
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A0A1D6IB90 View 3D Structure Click here
A0A1D6JPC4 View 3D Structure Click here
A0A1D6KGQ0 View 3D Structure Click here
A0A1D6KNG7 View 3D Structure Click here
A0A1D6KNH1 View 3D Structure Click here
A0A1D6KNH3 View 3D Structure Click here
A0A1D6KR34 View 3D Structure Click here
A0A1D6KZ40 View 3D Structure Click here
A0A1D6KZ42 View 3D Structure Click here
A0A1D6L1V9 View 3D Structure Click here
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A0A1D6ML67 View 3D Structure Click here
A0A1D6MWB3 View 3D Structure Click here
A0A1D6N2N3 View 3D Structure Click here
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A0A1D6QBC9 View 3D Structure Click here
A0A1D6QBC9 View 3D Structure Click here
A0A1D6QNU1 View 3D Structure Click here
A0A1I9LQF0 View 3D Structure Click here
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A3AL27 View 3D Structure Click here
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I1K645 View 3D Structure Click here
I1K714 View 3D Structure Click here
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I1K717 View 3D Structure Click here
I1K720 View 3D Structure Click here
I1K7K7 View 3D Structure Click here
I1K968 View 3D Structure Click here
I1KEP3 View 3D Structure Click here
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I1KER0 View 3D Structure Click here
I1KG24 View 3D Structure Click here
I1KHG8 View 3D Structure Click here
I1KNY8 View 3D Structure Click here
I1KP56 View 3D Structure Click here
I1KPR7 View 3D Structure Click here
I1KTM8 View 3D Structure Click here
I1KTN4 View 3D Structure Click here
I1KU04 View 3D Structure Click here
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I1LI08 View 3D Structure Click here
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I1LL19 View 3D Structure Click here
I1LPF3 View 3D Structure Click here
I1LPU5 View 3D Structure Click here
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I1LPU9 View 3D Structure Click here
I1LPV2 View 3D Structure Click here
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I1LR68 View 3D Structure Click here
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I1LSF3 View 3D Structure Click here
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I1LY99 View 3D Structure Click here
I1LYA1 View 3D Structure Click here
I1LZ77 View 3D Structure Click here
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I1LZE5 View 3D Structure Click here
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I1MW79 View 3D Structure Click here
I1MY20 View 3D Structure Click here
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I1NA99 View 3D Structure Click here
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K7K0V9 View 3D Structure Click here
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K7K488 View 3D Structure Click here
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K7KH49 View 3D Structure Click here
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K7KN19 View 3D Structure Click here
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Q9ZUZ3 View 3D Structure Click here

trRosetta Structure

The structural model below was generated by the Baker group with the trRosetta software using the Pfam UniProt multiple sequence alignment.

The InterPro website shows the contact map for the Pfam SEED alignment. Hovering or clicking on a contact position will highlight its connection to other residues in the alignment, as well as on the 3D structure.

Improved protein structure prediction using predicted inter-residue orientations. Jianyi Yang, Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, David Baker Proceedings of the National Academy of Sciences Jan 2020, 117 (3) 1496-1503; DOI: 10.1073/pnas.1914677117;