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140  structures 3311  species 0  interactions 32070  sequences 375  architectures

Family: DIOX_N (PF14226)

Summary: non-haem dioxygenase in morphine synthesis N-terminal

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The Pfam group coordinates the annotation of Pfam families in Wikipedia, but we have not yet assigned a Wikipedia article to this family. If you think that a particular Wikipedia article provides good annotation, please let us know.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

non-haem dioxygenase in morphine synthesis N-terminal Provide feedback

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity.

Literature references

  1. Hagel JM, Facchini PJ;, Nat Chem Biol. 2010;6:273-275.: Dioxygenases catalyze the O-demethylation steps of morphine biosynthesis in opium poppy. PUBMED:20228795 EPMC:20228795


Internal database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR026992

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity [ PUBMED:20228795 ].

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets and the UniProtKB sequence database. More...

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We make a range of alignments for each Pfam-A family. You can see a description of each above. You can view these alignments in various ways but please note that some types of alignment are never generated while others may not be available for all families, most commonly because the alignments are too large to handle.

  Seed
(322)
Full
(32070)
Representative proteomes UniProt
(62334)
RP15
(3201)
RP35
(15278)
RP55
(26029)
RP75
(37530)
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PP/heatmap 1            

1Cannot generate PP/Heatmap alignments for seeds; no PP data available

Key: ✓ available, x not generated, not available.

Format an alignment

  Seed
(322)
Full
(32070)
Representative proteomes UniProt
(62334)
RP15
(3201)
RP35
(15278)
RP55
(26029)
RP75
(37530)
Alignment:
Format:
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Sequence:
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We make all of our alignments available in Stockholm format. You can download them here as raw, plain text files or as gzip-compressed files.

  Seed
(322)
Full
(32070)
Representative proteomes UniProt
(62334)
RP15
(3201)
RP35
(15278)
RP55
(26029)
RP75
(37530)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

HMM logo

HMM logos is one way of visualising profile HMMs. Logos provide a quick overview of the properties of an HMM in a graphical form. You can see a more detailed description of HMM logos and find out how you can interpret them here. More...

Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

Note: You can also download the data file for the tree.

Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Jackhmmer:Q94JV6
Previous IDs: none
Type: Family
Sequence Ontology: SO:0100021
Author: Coggill P
Number in seed: 322
Number in full: 32070
Average length of the domain: 113.90 aa
Average identity of full alignment: 21 %
Average coverage of the sequence by the domain: 33.25 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 27.3 27.3
Trusted cut-off 27.3 27.3
Noise cut-off 27.2 27.2
Model length: 118
Family (HMM) version: 8
Download: download the raw HMM for this family

Species distribution

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Selections

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the DIOX_N domain has been found. There are 140 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein sequence.

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AlphaFold Structure Predictions

The list of proteins below match this family and have AlphaFold predicted structures. Click on the protein accession to view the predicted structure.

Protein Predicted structure External Information
A0A0N7KFL0 View 3D Structure Click here
A0A0N7KLM5 View 3D Structure Click here
A0A0N7KQM8 View 3D Structure Click here
A0A0P0V4I5 View 3D Structure Click here
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A0A0R0EGI2 View 3D Structure Click here
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A0A0R0HJV6 View 3D Structure Click here
A0A0R0I9Y9 View 3D Structure Click here
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A0A0R0J536 View 3D Structure Click here
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A0A0R0K074 View 3D Structure Click here
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A0A0R4J2N9 View 3D Structure Click here
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A0A0R4J5R0 View 3D Structure Click here
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A0A1D6F8B8 View 3D Structure Click here
A0A1D6F9M0 View 3D Structure Click here
A0A1D6FGN0 View 3D Structure Click here
A0A1D6FWL0 View 3D Structure Click here
A0A1D6G8X2 View 3D Structure Click here
A0A1D6GCY9 View 3D Structure Click here
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I1L632 View 3D Structure Click here
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