# STOCKHOLM 1.0 #=GF ID Transp_inhibit #=GF AC PF18791.2 #=GF DE Transport inhibitor response 1 protein domain #=GF AU Paladin L;0000-0003-0011-9397 #=GF AU Piovesan D;0000-0001-8210-2390 #=GF SE RepeatsDB #=GF GA 33.00 29.00; #=GF TC 33.10 29.50; #=GF NC 32.40 28.80; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 18391211 #=GF RT Small-molecule agonists and antagonists of F-box #=GF RT protein-substrate interactions in auxin perception and #=GF RT signaling. #=GF RA Hayashi K, Tan X, Zheng N, Hatate T, Kimura Y, Kepinski S, #=GF RA Nozaki H; #=GF RL Proc Natl Acad Sci U S A. 2008;105:5632-5637. #=GF RN [2] #=GF RM 20927106 #=GF RT Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ #=GF RT co-receptor. #=GF RA Sheard LB, Tan X, Mao H, Withers J, Ben-Nissan G, Hinds TR, #=GF RA Kobayashi Y, Hsu FF, Sharon M, Browse J, He SY, Rizo J, Howe GA, #=GF RA Zheng N; #=GF RL Nature. 2010;468:400-405. #=GF DR INTERPRO; IPR041101; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC The F-box protein Transport inhibitor response 1 (TIR1) is a #=GF CC receptor for auxin, triggering an auxin-enhanced and #=GF CC ubiquitin-mediated degradation of substrates [1]. The targets #=GF CC are recruited via interaction with the leucine-rich repeat #=GF CC region of the protein. This Pfam entry represents a specific #=GF CC unit of the LRR region, including an insertion of one short #=GF CC alpha-helix in the loop between the beta-strand and the #=GF CC following helix. It shares some sequence homology with a unit #=GF CC with similar structure of Coronatine-insensitive protein 1 [2]. #=GF SQ 75 #=GS A0A0K9R4P9_SPIOL/61-107 AC A0A0K9R4P9.1 #=GS A0A0D3CVF8_BRAOL/103-149 AC A0A0D3CVF8.1 #=GS B9I9W7_POPTR/65-111 AC B9I9W7.1 #=GS A0A2G2V7R7_CAPBA/73-119 AC A0A2G2V7R7.1 #=GS A0A251TG39_HELAN/62-108 AC A0A251TG39.1 #=GS A0A251TGT5_HELAN/62-108 AC A0A251TGT5.1 #=GS A0A022RLB6_ERYGU/63-109 AC A0A022RLB6.1 #=GS A0A072VML5_MEDTR/71-117 AC A0A072VML5.1 #=GS A0A078GAB1_BRANA/103-149 AC A0A078GAB1.1 #=GS D8QPC7_SELML/89-135 AC D8QPC7.1 #=GS A0A0D9WH55_9ORYZ/78-124 AC A0A0D9WH55.1 #=GS A0A1U8ABN8_NELNU/71-117 AC A0A1U8ABN8.1 #=GS A0A067G0U1_CITSI/73-119 AC A0A067G0U1.1 #=GS A0A0D2RHI7_GOSRA/75-121 AC A0A0D2RHI7.1 #=GS A0A175YB83_DAUCS/64-110 AC A0A175YB83.1 #=GS A0A166BY00_DAUCS/74-120 AC A0A166BY00.1 #=GS A0A078J7G3_BRANA/185-231 AC A0A078J7G3.1 #=GS A0A251TVK1_HELAN/125-171 AC A0A251TVK1.1 #=GS A0A251UE37_HELAN/75-121 AC A0A251UE37.1 #=GS M0TLY7_MUSAM/49-95 AC M0TLY7.1 #=GS A0A200Q7K0_9MAGN/72-118 AC A0A200Q7K0.1 #=GS A0A0D3FGL3_9ORYZ/75-121 AC A0A0D3FGL3.1 #=GS A0A199VTN4_ANACO/72-118 AC A0A199VTN4.1 #=GS A0A2K1K2P6_PHYPA/78-124 AC A0A2K1K2P6.1 #=GS A0A2K1JBJ4_PHYPA/73-119 AC A0A2K1JBJ4.1 #=GS A0A2K1IJZ0_PHYPA/91-137 AC A0A2K1IJZ0.1 #=GS A0A2K1KTR5_PHYPA/88-134 AC A0A2K1KTR5.1 #=GS D8RF91_SELML/81-127 AC D8RF91.1 #=GS A9TAY1_PHYPA/62-108 AC A9TAY1.1 #=GS A0A200PUC5_9MAGN/107-153 AC A0A200PUC5.1 #=GS A0A2H3YZT8_PHODC/92-138 AC A0A2H3YZT8.1 #=GS A0A0K9P3Y8_ZOSMR/76-122 AC A0A0K9P3Y8.1 #=GS A0A2H3XDP9_PHODC/96-142 AC A0A2H3XDP9.1 #=GS A0A199W7L6_ANACO/99-145 AC A0A199W7L6.1 #=GS A0A0D9YYG9_9ORYZ/150-196 AC A0A0D9YYG9.1 #=GS A0A0E0BIY6_9ORYZ/2022-2068 AC A0A0E0BIY6.1 #=GS A0A0E0MFB9_ORYPU/1867-1913 AC A0A0E0MFB9.1 #=GS A0A1U8ATK8_NELNU/118-164 AC A0A1U8ATK8.1 #=GS A0A165Z947_DAUCS/93-139 AC A0A165Z947.1 #=GS A0A251UVQ0_HELAN/87-133 AC A0A251UVQ0.1 #=GS A0A251SAS0_HELAN/94-140 AC A0A251SAS0.1 #=GS A0A1S3XFY2_TOBAC/113-159 AC A0A1S3XFY2.1 #=GS A0A162A4F6_DAUCS/77-123 AC A0A162A4F6.1 #=GS A0A1Q3BGB0_CEPFO/120-166 AC A0A1Q3BGB0.1 #=GS A0A1J7H4B9_LUPAN/95-141 AC A0A1J7H4B9.1 #=GS A0A1J7GPW1_LUPAN/68-114 AC A0A1J7GPW1.1 #=GS A0A1S2XM66_CICAR/116-162 AC A0A1S2XM66.1 #=GS A0A151TSQ0_CAJCA/70-116 AC A0A151TSQ0.1 #=GS A0A0K9RQ03_SPIOL/106-152 AC A0A0K9RQ03.1 #=GS A0A067LAB6_JATCU/108-154 AC A0A067LAB6.1 #=GS A0A061FDI5_THECC/110-156 AC A0A061FDI5.1 #=GS A0A2G9HM23_9LAMI/90-136 AC A0A2G9HM23.1 #=GS A0A251TYT9_HELAN/24-70 AC A0A251TYT9.1 #=GS A0A059CDA5_EUCGR/75-121 AC A0A059CDA5.1 #=GS A0A067GK94_CITSI/74-120 AC A0A067GK94.1 #=GS D8R5Z3_SELML/62-108 AC D8R5Z3.1 #=GS W1P8I7_AMBTC/61-107 AC W1P8I7.1 #=GS A0A022QVC6_ERYGU/68-114 AC A0A022QVC6.1 #=GS A0A2I4FTA9_JUGRE/61-107 AC A0A2I4FTA9.1 #=GS G7KCN6_MEDTR/46-92 AC G7KCN6.1 #=GS A0A059BEK2_EUCGR/61-107 AC A0A059BEK2.1 #=GS I1MNN2_SOYBN/61-107 AC I1MNN2.1 #=GS A0A078FT23_BRANA/61-107 AC A0A078FT23.1 #=GS A0A0K9QND6_SPIOL/88-134 AC A0A0K9QND6.1 #=GS A0A199V918_ANACO/70-116 AC A0A199V918.1 #=GS C5Z046_SORBI/78-124 AC C5Z046.1 #=GS A0A2H3ZU27_PHODC/68-114 AC A0A2H3ZU27.1 #=GS A0A0K9NLC3_ZOSMR/80-126 AC A0A0K9NLC3.1 #=GS A0A0K9PHC9_ZOSMR/68-114 AC A0A0K9PHC9.1 #=GS A0A2H3YXJ3_PHODC/61-107 AC A0A2H3YXJ3.1 #=GS F6I1P7_VITVI/61-105 AC F6I1P7.1 #=GS B4FYV0_MAIZE/61-107 AC B4FYV0.1 #=GS A0A0D9XSF0_9ORYZ/61-107 AC A0A0D9XSF0.1 #=GS A0A199UQW9_ANACO/61-107 AC A0A199UQW9.1 #=GS A0A1B6PKE7_SORBI/61-107 AC A0A1B6PKE7.1 A0A0K9R4P9_SPIOL/61-107 PRLRVLTIKGKPHFADFNLVPHDWGGYIYPWIEALAKGCPSLEGLRL A0A0D3CVF8_BRAOL/103-149 PKVRSVELKGKPHFADFNLVPEGWGWYVYPWIEAMSKAYTWLEEIRL B9I9W7_POPTR/65-111 PELRSVELKGKPHFADFSLVPDGWGGCVYPWIAALATAYPWLEEIRL A0A2G2V7R7_CAPBA/73-119 PDIRSVNIKGKPHFADFDLVPEGWGAYFYPWVVTMATAYPFLEEIRL A0A251TG39_HELAN/62-108 PEVKAVELKGKPHFADFNLVPEGWGGFVYPWIVEFARVYPWLEEIRL A0A251TGT5_HELAN/62-108 PELRAVELKGKPHFADFNLVPDGWGGYACSWIDEMSRAYPWLEEIRL A0A022RLB6_ERYGU/63-109 PEVREVEIKGKPHFADFNLVPEGWGGYVKPWIRVMSGAYPLLEEMKL A0A072VML5_MEDTR/71-117 PKVRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAFPCLEEIKL A0A078GAB1_BRANA/103-149 PKMRSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAARRPFLEEIRL D8QPC7_SELML/89-135 PNLRSLKLKAKPRAYEFDLLPHNWGGHVHPWLENIGPAYPQLSALHL A0A0D9WH55_9ORYZ/78-124 PRLESLAVKGKPRAAMYGLIPDDWGAYARPWVAELAAPLECLKAIHL A0A1U8ABN8_NELNU/71-117 KNLQSLKLKGKPRAAMFNLIPEDWGGYVTPWIKEIAEAFDCLNSLHF A0A067G0U1_CITSI/73-119 RNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHF A0A0D2RHI7_GOSRA/75-121 PHLESLKLKGKPRAAMFDMIPEDWGGYVTPWVKEIAENLTCLKSVHF A0A175YB83_DAUCS/64-110 RHIESIKLKGKPRAAMFNLIPEDWGGYVTPWVVEFSRSFVALNSLHF A0A166BY00_DAUCS/74-120 QHIESVKLKGKPRAAMFNLIPEDWGGYVKPWVDVFCHNFVCLKSLHF A0A078J7G3_BRANA/185-231 PNLRSIKLKGKPRAAMFNLIPENWGGFVTPWVNEIASSLRRLKSVHF A0A251TVK1_HELAN/125-171 PYLESIKLKGKPRAAMYNLIPEDWGGSVTSWVEEIARSFTCLKVVHF A0A251UE37_HELAN/75-121 PFVESVKLKGKPRAAMYNLIPEDWGGFATPWVEELSKSFSCLKGVHF M0TLY7_MUSAM/49-95 PKLESLKLNGKPRASMFNLIPEDWGGYAGPWVHGIAEALSCLKTIYF A0A200Q7K0_9MAGN/72-118 PRLESLKLKGKPRAARFNLIPGDWGGYAEPWIKEISENFNCLKSIHF A0A0D3FGL3_9ORYZ/75-121 PCLESLKLKAKPRAAMFNLIPEDWGGSASPWIRQLSASFHFLKALHL A0A199VTN4_ANACO/72-118 PCLESLKIKAKPRAAMFDLIPDDWGGYAAPWIADIARSFECLTALHL A0A2K1K2P6_PHYPA/78-124 KGLEGIKLKGKPRAAEYNLVRSDWGGYGEPWLKVLGRQYADLHILQL A0A2K1JBJ4_PHYPA/73-119 KRLEGLKLKGKPRAAEYDLLVPDWGGYAEPWIRDLGRAYTSLQTLQL A0A2K1IJZ0_PHYPA/91-137 PNLEKIKIKGKPRAYEFGLLVESWGAHAGPWIEEIASVYPNLEGLAL A0A2K1KTR5_PHYPA/88-134 PNIEKFKIKGKPRAVEFNLLVDDWGGYASAWVEEIVRAYPRLHTLHF D8RF91_SELML/81-127 PRLKSMTLKGKPRFADFSLVPPNWGAFFHPWMPVIVESYPWLEALRL A9TAY1_PHYPA/62-108 PKLTSLEMKGRPRFTDFGLVPSNWGAFIQPWIEALAEHYAGLECLRL A0A200PUC5_9MAGN/107-153 QRVRSLVLKGKPRFADFNLVPPNWGAHFTPWVTEMSSAYPLLEKVCL A0A2H3YZT8_PHODC/92-138 RRVRAVVLKGKPRFADFGLIPNNWGAHFHPWVCAMAAAYPWLEKICL A0A0K9P3Y8_ZOSMR/76-122 RRVRTVFLKGRPRFADFGLVPVGWGGNLSPWIAVMSPAYPWLEKLCL A0A2H3XDP9_PHODC/96-142 RRVRALVLKGKPRFADFNLVPPRWGAGFYPWLAALAPAYPWLERLCL A0A199W7L6_ANACO/99-145 RGVRSIVLKGKPRFADFSLVPYGWGAHFSSWLFAMAPVYPWLERICL A0A0D9YYG9_9ORYZ/150-196 GGVCAVVLKGKPRFADFSLVPYGWGAYVSPWVAALGPAYPRLERICL A0A0E0BIY6_9ORYZ/2022-2068 HGLRSITIKGRPRFANSTLVPKGWGAYASPWMTALGPAYPRLERIFL A0A0E0MFB9_ORYPU/1867-1913 HGLRSITLKGKPRFADFTFLPKGWGAYASPWVAALGPAYPHLECIFL A0A1U8ATK8_NELNU/118-164 KRVKSLVLKGKPRFADFSLVPPNWGAQFFPWVSAMAAAYPWLEKIYL A0A165Z947_DAUCS/93-139 RRVRSVVLKGKPRFADFSLMPPDWGAHFAPWVIEMAEAYRGLEKLYL A0A251UVQ0_HELAN/87-133 TRVRSVTIKGKPRFADFSLLPQDWGAHFTPWVLTMASAYRALEKIHL A0A251SAS0_HELAN/94-140 KRIRSIALKGKPRFADFSLLPVDWGAYFTPWAHAMANAYRALEKIYL A0A1S3XFY2_TOBAC/113-159 KRVTSVAIKGKPRFADFSLLPPDWGAHFAPWASVLGEAYRGLEKLYL A0A162A4F6_DAUCS/77-123 KAIKSVVLKGKPRFADFSLLPPDWGARFSPWVVVLSGAYRGLEKLCL A0A1Q3BGB0_CEPFO/120-166 KRVKSVVLKGKPRFADFNLMPPNWGAHFAPWVLAMAKAYPGLEKVCL A0A1J7H4B9_LUPAN/95-141 GRVRSVTIKGKPRFADFDMMPLNWGAHFTPWVVAMAKAYPWLEKVHL A0A1J7GPW1_LUPAN/68-114 TRVRSITVKGKPRFSDFDLMPMNWGAHFSPWAIALSKAYPWLEKIHL A0A1S2XM66_CICAR/116-162 SRIKSVTVKGKPRFADFDLMPVDWGAHFTPWVSSLAQAYPWLEKLHL A0A151TSQ0_CAJCA/70-116 PRVRSLTIKGKPRFADFDLMPLNWGAHFTPWAQALAQSYPSLRRLHL A0A0K9RQ03_SPIOL/106-152 KRVRSAVIKGKPRFADFGLTPFNWGAHSTPWLSGFGQAYPWLEKIHL A0A067LAB6_JATCU/108-154 ARIRSLTLKGKPRFADFNLMPPRWGAHFAPWVSSMAKAYPWLEKVHL A0A061FDI5_THECC/110-156 IRVRALHLKGKPRFADFNLMPPDWGAHFNPWALALAKAYPWLEKVYL A0A2G9HM23_9LAMI/90-136 PRIKSVILKGKPRFSDFNMLPRDWGANVHSWLVVFAKVYPFLEELRL A0A251TYT9_HELAN/24-70 PAIRSVTLKGKPRFSDFNLVPDDWGADVQPWLNVFATAYPFLEELRL A0A059CDA5_EUCGR/75-121 PNIRSVMLKGKPRFSDFNLVPPNWGADVHGWLAVFADQYPQLEELRL A0A067GK94_CITSI/74-120 PNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRL D8R5Z3_SELML/62-108 PKVRSLTLKGKPRFADFNLLPPHWGAYLLPWIVTFAHASLPLEELRL W1P8I7_AMBTC/61-107 PRVKALSLKGKPHFADFNLVPHDWGAHVLPWIEAMARSYQWLEELKL A0A022QVC6_ERYGU/68-114 PRVRSLTLKGKPHFADFNLVPHDWGGDVYPWIEAMTKNGINLEELRL A0A2I4FTA9_JUGRE/61-107 PGLKSLTLKGKPHFADFNLVPHDWGGYVQPWIEALSNSRIGLEELRL G7KCN6_MEDTR/46-92 HNLKSLTLKGKPHFNDFTLVPRDWGGFVYPWIEALAKNKVGLEELRL A0A059BEK2_EUCGR/61-107 PGVRSLTLKGKPHFADFNLVPPDWGGFVYPWIDALARSKVNLEELRL I1MNN2_SOYBN/61-107 PELRSLTLKGKPHFPYFSLVPSGWGGFVAPWIEALARSRVDLEELRL A0A078FT23_BRANA/61-107 PSLRSLTLKGKPHFADFNLVPHEWGGFVHPWIVALAKARVELEELRL A0A0K9QND6_SPIOL/88-134 RDIRSVTIKGKPHFADFNLVPDGWGGHALPWIVAFSDAFPALEELRM A0A199V918_ANACO/70-116 PEARAAAVKGKPHFADFNLVPGDWGGGADAWVAAMAEGWPLLEELRL C5Z046_SORBI/78-124 PAVRAVEVKGKPHFADFGLVPPAWGAAAAPWVAAAADGWPLLEEISF A0A2H3ZU27_PHODC/68-114 PNVRVVSIKGKPHFADFNLVPSDWGGRADAWVTAMAEGWPHLEELSL A0A0K9NLC3_ZOSMR/80-126 PNVRRLWIKGKPHFADFNLVPDGWGGSAMEWVRVLIECCPMLVELRF A0A0K9PHC9_ZOSMR/68-114 PGMRSLSIKGKPHFADFNLVPYEWGGGAFEWIVALAEECPLLEELRM A0A2H3YXJ3_PHODC/61-107 PGVRSLSVKGKPHFADFNLVPHDWGGFALPWIEAFARGCPGLEELRL F6I1P7_VITVI/61-105 PRMRALSLKGKPHFAGLNMV..NWGGFALPWIEFFAKNCPWLQELRL B4FYV0_MAIZE/61-107 PNMRALSLKGKPHFAEFNLVPAGWGATANPWVDACARACPGLEELRL A0A0D9XSF0_9ORYZ/61-107 PRLRSLSVKGKPRFADFGLVPAGWGATAEPWVEACAAECPGLEELRL A0A199UQW9_ANACO/61-107 PRLTSLRVKGKPHFADFNLVPPDWGGNAAPWIEEAARSCPALLELRL A0A1B6PKE7_SORBI/61-107 PNVKALTVKGKPHFADFNLVPPDWGGYAGPWIEAAARSCVGLEELRM #=GC seq_cons Pcl+SlsLKGKPRFADFsLlPtsWGuaspPWlpshAcuastLEcl+L //