# STOCKHOLM 1.0 #=GF ID CoV_NSP2_N #=GF AC PF19211.2 #=GF DE Coronavirus replicase NSP2, N-terminal #=GF PI Corona_NS2_N; #=GF AU Bateman A;0000-0002-6982-4660 #=GF AU Chuguransky S;0000-0002-0520-0736 #=GF SE Bateman A #=GF GA 29.70 29.70; #=GF TC 30.10 35.90; #=GF NC 27.30 29.60; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 16227261 #=GF RT The nsp2 replicase proteins of murine hepatitis virus and severe #=GF RT acute respiratory syndrome coronavirus are dispensable for viral #=GF RT replication. #=GF RA Graham RL, Sims AC, Brockway SM, Baric RS, Denison MR; #=GF RL J Virol. 2005;79:13399-13411. #=GF DR INTERPRO; IPR043615; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This entry corresponds to the N-terminal region of coronavirus #=GF CC non-structural protein 2. NSP2 is encoded by ORF1a/1ab and #=GF CC proteolytically released from the pp1a/1ab polyprotein. The #=GF CC function of this protein is uncertain. This region contains #=GF CC numerous conserved and semi-conserved cysteine residues. #=GF SQ 79 #=GS A0A0U1UZ20_9ALPC/113-316 AC A0A0U1UZ20.1 #=GS B1PHI7_9ALPC/111-318 AC B1PHI7.1 #=GS R1A_CVPPU/110-310 AC P0C6V2.1 #=GS B8Q8S5_SARS/182-423 AC B8Q8S5.1 #=GS H9TEW9_9ALPC/110-310 AC H9TEW9.1 #=GS E0ZN59_BCHK9/191-395 AC E0ZN59.1 #=GS Q6UZF5_SARS/182-423 AC Q6UZF5.1 #=GS R1A_BCHK5/196-441 AC P0C6T5.1 #=GS F2YDB1_SARS/182-423 AC F2YDB1.1 #=GS R1AB_SARS2/182-423 AC P0DTD1.1 #=GS A0A125R5A3_9ALPC/110-310 AC A0A125R5A3.1 #=GS R1AB_BC279/182-423 AC P0C6V9.1 #=GS B1PHJ4_9ALPC/111-318 AC B1PHJ4.1 #=GS R1AB_FIPV/110-310 AC Q98VG9.2 #=GS A8JNZ0_9ALPC/111-315 AC A8JNZ0.1 #=GS R1A_BC279/182-423 AC P0C6F5.1 #=GS B8Q8U6_SARS/182-423 AC B8Q8U6.1 #=GS A8JNZ1_9ALPC/111-315 AC A8JNZ1.1 #=GS A0A0U1UZA8_9ALPC/111-318 AC A0A0U1UZA8.1 #=GS S5Z1D1_9ALPC/111-314 AC S5Z1D1.1 #=GS A3EXE7_BCHK5/196-441 AC A3EXE7.1 #=GS R1A_SARS2/182-423 AC P0DTC1.1 #=GS R1AB_BC512/111-320 AC P0C6W0.1 #=GS A3EXI9_BCHK9/191-395 AC A3EXI9.1 #=GS R1A_BC512/111-320 AC P0C6F6.1 #=GS A3EXC0_BCHK4/196-440 AC A3EXC0.1 #=GS B1PHI6_9ALPC/111-318 AC B1PHI6.1 #=GS A3EXA2_BCHK4/196-440 AC A3EXA2.1 #=GS A0A0K1Z0N1_SARS/182-423 AC A0A0K1Z0N1.1 #=GS B1PHK0_9ALPC/113-316 AC B1PHK0.1 #=GS B1PHJ3_9ALPC/111-318 AC B1PHJ3.1 #=GS H9TEX0_9ALPC/110-310 AC H9TEX0.1 #=GS B8Q8S4_SARS/182-423 AC B8Q8S4.1 #=GS A0A0K1YZY7_SARS/182-423 AC A0A0K1YZY7.1 #=GS D9J203_9ALPC/111-312 AC D9J203.1 #=GS D9J202_9ALPC/111-312 AC D9J202.1 #=GS E0ZN51_BCHK9/191-395 AC E0ZN51.1 #=GS A0A1X9JQL5_9ALPC/114-205 AC A0A1X9JQL5.1 #=GS R1AB_BCHK5/196-441 AC P0C6W4.1 #=GS A0A096XNJ3_9ALPC/114-290 AC A0A096XNJ3.2 #=GS A0A1X9JQL5_9ALPC/195-287 AC A0A1X9JQL5.1 #=GS A0A023YA54_MERS/196-445 AC A0A023YA54.1 #=GS A0A125R5A4_9ALPC/110-310 AC A0A125R5A4.1 #=GS R1AB_BCHK9/191-395 AC P0C6W5.1 #=GS R1AB_CVH22/112-316 AC P0C6X1.1 #=GS A0A0U1UZC3_9ALPC/112-317 AC A0A0U1UZC3.1 #=GS A0A0P0LKV0_CVH22/112-316 AC A0A0P0LKV0.1 #=GS B1PHK1_9ALPC/113-316 AC B1PHK1.1 #=GS R1A_SARS/182-423 AC P0C6U8.1 #=GS E0XIZ2_9BETC/182-423 AC E0XIZ2.1 #=GS R1AB_BCHK4/196-440 AC P0C6W3.1 #=GS A0A1B3Q5W8_9BETC/191-395 AC A0A1B3Q5W8.1 #=GS A0A0P0ILY9_CVH22/112-316 AC A0A0P0ILY9.1 #=GS A0A0U1UZ65_BCHK4/196-440 AC A0A0U1UZ65.1 #=GS R1A_CVH22/112-316 AC P0C6U2.1 #=GS A0A0U1WHG0_SARS/182-423 AC A0A0U1WHG0.1 #=GS A0A0U1WHK4_SARS/182-423 AC A0A0U1WHK4.1 #=GS A0A0K1RLM9_9ALPC/110-310 AC A0A0K1RLM9.1 #=GS T2B9U0_MERS/194-443 AC T2B9U0.1 #=GS A0A0U1WHG4_9ALPC/111-315 AC A0A0U1WHG4.1 #=GS A0A0U2UMS4_9ALPC/110-310 AC A0A0U2UMS4.1 #=GS R1AB_SARS/182-423 AC P0C6X7.1 #=GS B8Q8U7_SARS/182-423 AC B8Q8U7.1 #=GS T2B9I2_MERS/194-443 AC T2B9I2.1 #=GS U5LR11_9BETC/201-450 AC U5LR11.1 #=GS S5YAF0_9ALPC/111-314 AC S5YAF0.1 #=GS A0A0U1WHD1_9ALPC/113-316 AC A0A0U1WHD1.1 #=GS A0A088DIE1_9BETC/176-416 AC A0A088DIE1.1 #=GS Q0PL14_9ALPC/110-310 AC Q0PL14.1 #=GS U5KNA9_9BETC/201-450 AC U5KNA9.1 #=GS K4K1U5_9ALPC/111-315 AC K4K1U5.1 #=GS A0A059VJE6_9ALPC/111-316 AC A0A059VJE6.1 #=GS R9QTB2_SARS/182-423 AC R9QTB2.1 #=GS F2YDB2_SARS/182-423 AC F2YDB2.1 #=GS R1AB_CVPPU/110-310 AC P0C6Y5.1 #=GS R1A_BCHK4/196-440 AC P0C6T4.1 #=GS A0A240FW17_9ALPC/111-292 AC A0A240FW17.1 #=GS R1A_BCHK9/191-395 AC P0C6T6.1 #=GS A0A0U1WHG1_9ALPC/109-313 AC A0A0U1WHG1.1 A0A0U1UZ20_9ALPC/113-316 ..........gp--VYVDNYMCGANGKPVLPADVWVFQD...YFGDETE-...........LIVNGVKHVKV.......WHVTRT.DIPYQFQSLGAIESIEWL-...TDIPHTL..RSGSKLSAARAVKHSKNVVLSEPLKTLYQACGSPFVTNgstlreavPKPVFAHAYVACK-CGRKSWSVGDWS.GYKSTCCGVFG.KPQCV..-VFGEVVPGDV-..........................FITTSSVGS...GTRY...YNGLTVKHV......VTVDGLACW............................. B1PHI7_9ALPC/111-318 ...........t-SIPVDNYMCGANGKPVITEDMWYFCD...YFGDDGDK...........ITINGQEYHKA.......WNVTRS.DVPYQFQNAGTILSIEYV-...STEAHVL..PDGAIAKTAKPPKFSKNVVLSEKCKALYDACGSPFVTNgtnvlevvTNPIFAHGFVQCK-CGSKHWTTGDWS.GFKSVCCGTPG.RVLCT..-VFGGVTPGSI-..........................LLTSTRVDAtpgATRY...YHGLTLKHI......CNVDDVACW............................. R1A_CVPPU/110-310 ..........ga--IYVDQYMCGADGKPVIEG---DFKD...YFGDEDI-...........IEFEGEEYHCA.......WTTVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDIKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQYA......GDVEGVSIW............................. B8Q8S5_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. H9TEW9_9ALPC/110-310 ..........ga--IYVDQYMCGADGKPVIEG---DFKD...YFGDEDV-...........IEFEGEDYHCA.......WTVVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYRKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDVKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQHA......GDVENVSIW............................. E0ZN59_BCHK9/191-395 ...........l-VKPVQDLLGDIKPDLTLEKLTLALSD...YRKDDG--...........YDLPGGFVKIA.......VTVIRK.PVAVVKQTIFTVQGVVEQHvegYYYPYA-..PLGVVKQTKPAAGGPIGKTVEAIMLSLYGTSG------........YKPATPVARLKCSYCDHFGWTPLKDMgTVVCLCGAEYQlTSSCVdaESAGLIKPGCVM..........................LLDKSPGMRvipGNRTyvaFGGAIWSPI......GKVNDVTVW............................. Q6UZF5_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. R1A_BCHK5/196-441 ...........d-FTPIDQYMCGKNGKPIAEFAALMASEgitKLADVEAEvksrt.dsdryIVFKNKLYRIV.......WNVQRK.DVAYSKQSAFTMNSIVQLDt.mEDVPRHSftIGSEIQVIAPSTAVQANGHLNLKQRLLYAFYGKQAVSE........PNYIYHSAYVDCTSCGKGSWLTGNAVqGFACDCGAHYCaNDVDL..QSSGLVRKNAVLlttcpcnkdge....ckhtlpqlvsmMTDKCDVEV..vGKTFiltYGGVIYAYM......GCSGGTMHF............................. F2YDB1_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. R1AB_SARS2/182-423 ...........y-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKAsctls.eqldfIDTKRGVYCCReheheiaWYTERS.EKSYELQTPFEIKLAKKFDtfnGECPNFVfpLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQ........---MCLSTLMKCDHCGETSWQTGDFV.KATCEFCGTENlTKEGA..TTCGYLPQNAVVkiycpachnsevgpehslaeyhnesgLKTILRKGG...RTIA...FGGCVFSYV......GCHNKCAYW............................. A0A125R5A3_9ALPC/110-310 ..........ga--IYVDQYMCGADGKPVIEG---EFKD...YFGDEDV-...........IIYEGEEYHCA.......WLTVRD.EKPLCQQNLLTIKEIQYN-...LDIPHKL..PNCAIREVAPPVKKNSKVVLSEDYRKLYDIFGSPFMGNgdslnkcfANLHFIAATLKCP-CGAESSGVGDWT.GFKTACCGLHG.KVKGV..-TLGAVKPGDA-..........................VITSMSAGK...GVKF...FANSVLQYA......GDVENVSVW............................. R1AB_BC279/182-423 ...........f-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKSmctls.eqldyIESKRGVYCCReheheivWFTERS.EKSYERQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECND........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEQCGTE-.NLVCEgpTTCGYLPANAVVkmpcpacqdpevgpehsvadyhnhsnIETRLRKGG...RTKC...FGGCVFAYV......GCYNKRAYW............................. B1PHJ4_9ALPC/111-318 ...........t-SIPVDNYMCGANGKPVLPEDMWCFCD...YFGDDGDN...........ITVNGQAYHKA.......WNVTRG.DVPYQFQNASTILSIEYL-...ADEKHVL..PDGAVAKSAKPPKFSKNIVLSEKYKALYDACGNPFVTNgtnvlevvTNPIFAHGFVQCK-CGSKHWTTGDWA.GFKSVCCGIPG.RVLCT..-VFGGVAPGSV-..........................LLTSTRVDAspgATRY...YHGLTLKHI......CNVDGVACW............................. R1AB_FIPV/110-310 ..........ga--IYVDQYMCGADGKPVIEG---EFKD...YFGDEDV-...........IIYEGEEYHCA.......WLTVRD.EKPLWQQTLLTIREIQYN-...LDIPHKL..PNCAIREVAPPVKKNSKVVLSEEYRKLYDIFGSPFMGNgdslntcfDSLHFIAATLKCP-CGAESSGVGDWT.GFKTACCGLHG.KVKGV..-TLGAVKPGDA-..........................IVTSMSAGK...GVKF...FANSVLQYA......GDVENVSVW............................. A8JNZ0_9ALPC/111-315 ............DVVPVDNYMCGADGKPAVPSEQWSFVE...HFDDDTDE...........ITVNGVTFRHA.......WNTVRA.DDPYEKQGLLSIKFIEYI-...SNVPHKL..PNGSVLGVAGTPKKRKAVVLDEKYSKLYDACGVPFVTNgksisevvTKPLFLHALVECK-CGNESWTVGDWT.GFKTTCCGVTG.KVITL..-AVGDVTPGDI-..........................VFTTPGAGK...GTKF...FCGLVLTFV......DTLEGVSAW............................. R1A_BC279/182-423 ...........f-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKSmctls.eqldyIESKRGVYCCReheheivWFTERS.EKSYERQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECND........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEQCGTE-.NLVCEgpTTCGYLPANAVVkmpcpacqdpevgpehsvadyhnhsnIETRLRKGG...RTKC...FGGCVFAYV......GCYNKRAYW............................. B8Q8U6_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. A8JNZ1_9ALPC/111-315 ............DVVPVDNYMCGADGKPAVPSEQWSFVE...HFDDDTDE...........ITVNGVTFRHA.......WNTVRA.DDPYEKQGLLSIKFIEYI-...SNVPHKL..PNGSVLGVAGTPKKRKAVVLDEKYSKLYDACGVPFVTNgksisevvTKPLFLHALVECK-CGNESWTVGDWT.GFKTTCCGVTG.KVITL..-AVGDVTPGDI-..........................VFTTPGAGK...GTKF...FCGLVLTFV......DTLEGVSAW............................. A0A0U1UZA8_9ALPC/111-318 ...........t-SIPVDNYMCGANGKPVLPEDMWCFCD...YFGDDGDN...........ITVNGQAYHKA.......WNVTRS.DVPYQFQNASTILSIEYL-...ADEKHVL..PDGAVAKTAKPPKFSKNIVLSEKYKALYDACGSPFVTNgtnvlevvTNPIFAHGFVQCK-CGSKHWTTGDWA.GFKSVCCGIPG.RVLCT..-VFGGVAPGSV-..........................LLTSTRVDAspgAARY...YHGLTLKHI......CNVDGVACW............................. S5Z1D1_9ALPC/111-314 ............NTIYVDQYLCGADGKPVVPEEFWDFKD...YFVDDDQ-...........VVVNGTTYIKA.......WVVERA.NVAYEAQNVTAINGITYC-...AKIPHTL..PDGSVVRVARKPKIKKSIVLSDVYKPLLEGLGAPFVKNgdtlasilTEPVFLHALVKCT-CGKTMWTVGDWS.CYKSLCCGVVC.KPLCN..-VAGIVNPGSA-..........................VVTRTGLGS...GIKY...YCGMFLRHI......LDVDGVSVW............................. A3EXE7_BCHK5/196-441 ...........d-FTPIDQYMCGKNGKPIAEFAALMASEgitKLADVEAEvksrt.dsdryIVLKNKLYRIV.......WNVQRK.DVAYSKQSAFTMNSIVQLDt.mEDVPRHSftIGSEIQVIAPSTAVQANGHLNLKQRLLYAFYGKQAVSE........PNYIYHSAYVDCTSCGKGSWLTGNAVqGFACDCGAHYCaNDVDL..QSSGLVRKNAVLlttcpcnkdge....ckhtlpqlvsmMTDKCDVEV..vGKTFiltYGGVIYAYM......GCSGGTMHF............................. R1A_SARS2/182-423 ...........y-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKAsctls.eqldfIDTKRGVYCCReheheiaWYTERS.EKSYELQTPFEIKLAKKFDtfnGECPNFVfpLNSIIKTIQPRVEKKKLDGFMGRIRSVYPVASPNECNQ........---MCLSTLMKCDHCGETSWQTGDFV.KATCEFCGTENlTKEGA..TTCGYLPQNAVVkiycpachnsevgpehslaeyhnesgLKTILRKGG...RTIA...FGGCVFSYV......GCHNKCAYW............................. R1AB_BC512/111-320 ...........t-TIPVDQFMCGADGAPVIQEGDWTFMD...YFQDSNQ-...........FTLNGITYVKA.......WDVDRK.PNDYAKQNVTCIRRITYI-...TDHRHVL..ADGTTMKTARHPKVNKSVVLDSPFDQIYKEVGSPFMGNgstfvemlKDPAFFHALITCE-CGRSEWTVGDWK.GYNSLCCNIKC.KPITI..-VTPKAVPGAV-..........................VITKAGIGA...GLKC...YNNVFLKHIidlvvpGTNLGWGVW............................. A3EXI9_BCHK9/191-395 ...........l-VKPVQDLLGDIRPDFTLEELTLCLSD...YRTDDG--...........YDLLGGYVKVA.......VKVVRK.PVPVVKQTIFTVQGVIEQCvegYYYPFP-..PMSAVKHTKPRSDKPLGKTVDSIMLSLYGTSG------........YNPATPVVRLRCSHCDFYGWVPLKDMgTVSCSCSAVHQlTSSCIdaESAGAIKPGCVM..........................LLDKSPGMRvipGNRTyvaFGGAIWSPI......GKVGDVTVW............................. R1A_BC512/111-320 ...........t-TIPVDQFMCGADGAPVIQEGDWTFMD...YFQDSNQ-...........FTLNGITYVKA.......WDVDRK.PNDYAKQNVTCIRRITYI-...TDHRHVL..ADGTTMKTARHPKVNKSVVLDSPFDQIYKEVGSPFMGNgstfvemlKDPAFFHALITCE-CGRSEWTVGDWK.GYNSLCCNIKC.KPITI..-VTPKAVPGAV-..........................VITKAGIGA...GLKC...YNNVFLKHIidlvvpGTNLGWGVW............................. A3EXC0_BCHK4/196-440 ...........d-CVPVDQYMCGKNGKPIADYAKIVAKEgltTLADIEVDvksrm.dsdrfIVLNKKLYRVV.......WNVTRR.NVPYSKQTAFTVVSVVQFDd.kESVPEHTftIGSQILMVSP-LKATNNKNFNLKQRLLYTFYGKDAVQQ........PGYIYHSAYVDCNACGKGTWCTGNAIqGFACDCGANYSaNDVDL..QSSGLVPRNALFlancpcannga....cshsaaqvysiLDGKACVEV..gGKSFtltFGGVVYAYM......GCCDGTMYF............................. B1PHI6_9ALPC/111-318 ...........t-SIPVDNYMCGANGKPVITEDMWYFCD...YFGDDGDK...........ITINGQEYHKA.......WNVTRS.DVPYQFQNAGTILSIEYV-...STEAHVL..PDGAIAKTAKPPKFSKNVVLSEKCKALYDACGSPFVTNgtnvlevvTNPIFAHGFVQCK-CGSKHWTTGDWS.GFKSVCCGTPG.RVLCT..-VFGGVTPGSI-..........................LLTSTRVDAtpgATRY...YHGLTLKHI......CNVDDVACW............................. A3EXA2_BCHK4/196-440 ............DCIPIDQYMCGKNGKPIADYAKIVAKEgltTLADIEVDvksrm.dsdrfIVLNKKLYRVV.......WNVTRR.NVPYPKQTAFTIVSVVQCDd.kDSVPEHTftIGSQILMVSP-LKATNNKNFNLKQRLLYTFYGKDAVQQ........PGYIYHSAYVDCNACGRGTWCTGNAIqGFACDCGANYSaNDVDL..QSSGLVPRNALFlancpcannga....cshsaaqvyniLDGKACVEV..gGKSFtltFGGVVYAYM......GCCDGTMYF............................. A0A0K1Z0N1_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLE-----CIKG...LLARAGKSmctls.eqldfIESKRGVYCCReheheiaWYTERS.DKSYEHQTPFDIKSAKKFDtfkEECPKFVfpLNSTVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCSHCDEVSWQTCDFL.KATCEHCGTEN.LVVEG.pTTCGYLPINAVVkmpcpacqnkevgpehsvadyhnysnIETRLRKGG...RTKC...FGGCVFSYV......GCYNKRAYW............................. B1PHK0_9ALPC/113-316 ..........sp--VYVDNYMCGANGKPVLPADVWVYQD...YFGEETE-...........LIVNGVKHVKV.......WHVTRT.DIPYQFQSLGAIESIEWL-...TDIPHTL..RNGSRLSAARAVKHSKNVVLSEPLKTLYQACGSPFVTNgstlreavPKPVFAHAYVACK-CGRKAWSVGDWS.GYKSTCCGVFG.KPQCV..-VFGEVVPGDV-..........................FITTSSVGS...GTRY...YNGLTVKHV......VTVDGLACW............................. B1PHJ3_9ALPC/111-318 ...........t-SIPVDNYMCGANGKPVLPEDMWCFCD...YFGDDGDN...........ITVNGQAYHKA.......WNVTRG.DVPYQFQNASTILSIEYL-...ADEKHVL..PDGAVAKSAKPPKFSKNIVLSEKYKALYDACGNPFVTNgtnvlevvTNPIFAHGFVQCK-CGSKHWTTGDWA.GFKSVCCGIPG.RVLCT..-VFGGVAPGSV-..........................LLTSTRVDAspgATRY...YHGLTLKHI......CNVDGVACW............................. H9TEX0_9ALPC/110-310 ..........ga--IYVDQYMCGADGKPVIEG---DFKD...YFGDEDV-...........IEFEGEDYHCA.......WTVVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYRKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDVKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQHA......GDVENVSIW............................. B8Q8S4_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. A0A0K1YZY7_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLE-----CIKG...LLARAGKSmctls.eqldfIESKRGVYCCReheheiaWYTERS.DKSYEHQTPFDIKSAKKFDtfkEECPKFVfpLNSTVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCSHCDEVSWQTCDFL.KATCEHCGTEN.LVVEG.pTTCGYLPINAVVkmpcpacqnkevgpehsvadyhnysnIETRLRKGG...RTKC...FGGCVFSYV......GCYNKRAYW............................. D9J203_9ALPC/111-312 ...........t-VVHVDQFLCGADGKPVRQG---DMKD...YFGDLEE-...........IVIDGITYQHA.......WDVVRDvEVPHAKQTALNVQSIMYL-...MDVDHKL..VNGATRQRAAPVKISSKVCLTEPYNSLYKHFGSPYMQNggnlnecfAKLNFIVANVKCK-CGGESSGVGDWT.GFKSACCGTPG.KVIGV..-SIGDASVGEA-..........................VITSKGCGT...GTKF...YAGAVLKYV......GDAEGVSVW............................. D9J202_9ALPC/111-312 ...........t-VVHVDQFLCGADGKPVRQG---DMKD...YFGDLEE-...........IVIDGITYQHA.......WDVVRDvEVPHAKQTALNVQSIMYL-...MDVDHKL..VNGATRQRAAPVKISSKVCLTEPYNSLYKHFGSPYMQNggnlnecfAKLNFIVANVKCK-CGGESSGVGDWT.GFKSACCGTPG.KVIGV..-SIGDASVGEA-..........................VITSKGCGT...GTKF...YAGAVLKYV......GDAEGVSVW............................. E0ZN51_BCHK9/191-395 ...........l-VKPVLELLGGIKPDLTLEKLTLALSE...YRNSDG--...........YDLPGGFVRVA.......VSVIRK.PVPVVKQTIFTVQGVVEQHvegFYYPYS-..TMSVVKHTKPRSDKPLGKTVESIMLSLYGTSG------........YSPATPVVRLRCSYCDFYGWVPPRDMgTVVCSCGAEFQlTSACVdaESAGAIKPGCVM..........................LLDRSPGMRlipGNRIyvaFGGAIWSPI......GTVNGVSVW............................. A0A1X9JQL5_9ALPC/114-205 ..........np--IFVDQYLCGADGTPVK--RDVEFKN...YFTDGDT-...........YVEPGKTYKLV.......WNVERK.PGDL---TLSGILSIKYL-...SDKPHKL..RDGVVQEVADAVS-------------------------........--------------------------.-----------.-----..------------..........................---------...----...---------......---------elndtkql..................... R1AB_BCHK5/196-441 ...........d-FTPIDQYMCGKNGKPIAEFAALMASEgitKLADVEAEvksrt.dsdryIVFKNKLYRIV.......WNVQRK.DVAYSKQSAFTMNSIVQLDt.mEDVPRHSftIGSEIQVIAPSTAVQANGHLNLKQRLLYAFYGKQAVSE........PNYIYHSAYVDCTSCGKGSWLTGNAVqGFACDCGAHYCaNDVDL..QSSGLVRKNAVLlttcpcnkdge....ckhtlpqlvsmMTDKCDVEV..vGKTFiltYGGVIYAYM......GCSGGTMHF............................. A0A096XNJ3_9ALPC/114-290 ...........n-PIYVDQYLCGPDGTPVKKG--LEFKD...YFMNGGDI...........YVEPGKTYVRV.......WDVERK.QDDL---TLDGILSIKYL-...SDKPHKL..RDGAIQGVADAVSE-----LN-------DTN-------........QMVRFIHAFVSCP-CGKSAFTVGSWM.GFATVCCGKIVkTPMCV..KFSGEAGSIFAL..........................PVGSRGFSA..nGKRS...YAGAEFQFC......CELSGVEIW............................. A0A1X9JQL5_9ALPC/195-287 avselndtkqlv---------------------------...--------...........-----------.......------.-------------------...-------..--------------------------------------........---RFIHGFVSCP-CGKSAFTVGGWN.GFATVCCGVTVkSPICV..KFSGKA--GSIF.........................aLPLGSRVFG...TKRI...YAGAEFQYC......CDLSGVEIW............................. A0A023YA54_MERS/196-445 ...........d-FIPIDQFMCGKDGAPVPDYATLAASEnliSLADVATDvsara.dsdgyIDFKSKLYRIV.......WHVERK.NVPYAKQTIFTINSVVQCDgiqDVPPHTF.tLGGKVDLIVPRNKWTGKTALNLKQKILYTFYGKDALDN........HSYIYHSAYADCTSCGKGSWLTGNAVqGFACDCGAQYSaNDVEL..QSSGVVNPNAIFcatcpfakgdscsssckhtlaqmvsqLSEKCDVAP..dGKSFtlaFGGVVYAYL......GCLEGTMYF............................. A0A125R5A4_9ALPC/110-310 ..........ga--IYVDQYMCGADGKPVIEG---EFKD...YFGDEDV-...........IIYEGEEYHCA.......WLTVRD.EKPLCQQNLLTIKEIQYN-...LDIPHKL..PNCAIREVAPPVKKNSKVVLSEDYRKLYDIFGSPFMGNgdslnkcfANLHFIAATLKCP-CGAESSGVGDWT.GFKTACCGLHG.KVKGV..-TLGAVKPGDA-..........................VITSMSAGK...GVKF...FANSVLQYA......GDVENVSVW............................. R1AB_BCHK9/191-395 ...........l-VEPVMKLLGVIKSDFTLEQLLAALGK...YRTEDG--...........YDLPDGYVKVA.......IKVGRK.AVPVLKQSIFTVVGVTEQLvpgYYYPFS-..TSSVVEHTKPTRGGPVGKTVEAVMLSLYGTNN------........YNPATPVARLKCSYCDYYGWTPLKDIgTVNCLCGAEFQlTSSCVdaESAGVIKPGCVM..........................LLDKSPGMRlipGNRTyvsFGGAIWSPI......GKVNGVTVW............................. R1AB_CVH22/112-316 ............NVTYTDQYLCGADGKPVMSEDLWQFVD...HFGENEE-...........IIINGHTYVCA.......WLTKRK.PLDYKRQNNLAIEEIEYVH...GDALHTL..RNGSVLEMAKEVKTSSKVVLSDALDKLYKVFGSPVMTNgsnileafTKPVFISALVQCT-CGTKSWSVGDWT.GFKSSCCNVIS.NKLCV..-VPGNVKPGDA-..........................VITTQQAGA...GIKY...FCGMTLKFV......ANIEGVSVW............................. A0A0U1UZC3_9ALPC/112-317 ..........pp--IYVDNYLCGADGTPVVQESMWSYTD...HFGEDCDE...........ITLCGITYVHA.......WNVQRA.DVPYEQQNVTSIFSIEYL-...LDVDHAL..QNGAVLNVASGVKYKKSVVLSEGFKKLYDACGVPAVQNgntlvdilTKPAFFHAIVSCS-CGLSSYTVGDWKiGFRSLCCGKRL.EPITV..-VVGDVKPGDI-..........................VVTSANAGD...GVRY...FNGLTLQYV......GDWEGVSCW............................. A0A0P0LKV0_CVH22/112-316 ...........t-VTYTDQYLCGADGKPVINEDLWQFVD...YFGENEE-...........VVINGQTYVCA.......WLTKRK.PLDHKRQNNLAIEEINYVR...GDALHTL..RNGSVLETAKDLKTSSKVVLSAELDKLYKMLGSPFMTNgstileaiVKPVFISALVQCT-CGKKGWSVGDWT.GFKSSCCNNLS.KRLCV..-VPGVVKPGDA-..........................VITTQKAGV...GIKY...FCGMTLKFV......ASIEGVSVW............................. B1PHK1_9ALPC/113-316 ..........sp--VYVDNYMCGANGKPVLPADVWVYQD...YFGEETE-...........LIVNGVKHVKV.......WHVTRT.DIPYQFQSLGAIESIEWL-...TDIPHTL..RNGSRLSAARAVKHSKNVVLSEPLKTLYQACGSPFVTNgstlreavPKPVFAHAYVACK-CGRKAWSVGDWS.GYKSTCCGVFG.KPQCV..-VFGEVVPGDV-..........................FITTSSVGS...GTRY...YNGLTVKHV......VTVDGLACW............................. R1A_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. E0XIZ2_9BETC/182-423 ...........y-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKSsapla.eqldfLESKRGVYCCReheheiaWYTERS.DKSYELQTPFDITNAKKFDsfkGECPKFVfpLNSTVKVLQPRVEKKKTEGFLGRIRTVYQVASPGEC--........-NSMHLSTYMNCNHCGEKSWQTCDFL.TATCEMCGNQ-.NTVEEgpTTCGYVPSNAVVkmvcpacqnpeigpdhsvadyhnnskIETRLRKGG...RIKS...FGGCVFSYV......GCYNKRAFW............................. R1AB_BCHK4/196-440 ............DCIPIDQYMCGKNGKPIADYAKIVAKEgltTLADIEVDvksrm.dsdrfIVLNKKLYRVV.......WNVTRR.NVPYPKQTAFTIVSVVQCDd.kDSVPEHTftIGSQILMVSP-LKATNNKNFNLKQRLLYTFYGKDAVQQ........PGYIYHSAYVDCNACGRGTWCTGNAIqGFACDCGANYSaNDVDL..QSSGLVPRNALFlancpcannga....cshsaaqvyniLDGKACVEV..gGKSFtltFGGVVYAYM......GCCDGTMYF............................. A0A1B3Q5W8_9BETC/191-395 ..........la--APIKEVLGGKGAGMSLVELTKFLGK...YRTADG--...........YELPSGIVKVA.......VKVVRK.NLPVSKQSIFTVLGVTERVvdgFYYPYS-..TNSVVSYTKPRAGATVGNTVQSVMLSMYGTEA------........YNPVTPVVRLRCSSCDFYGWVPVKDLgCVTCSCAAVHQiTSSCIdaESAGLIKQGAVM..........................LVDRSPSMRvvpGNRLyvaFGGAIWSPI......GKVNGVQVW............................. A0A0P0ILY9_CVH22/112-316 ...........t-VTYTDQYLCGADGKPVINEDLWQFVD...YFGENEE-...........VVINGQTYVCA.......WLTKRK.PLDHKRQNNLAIEEINYVR...GDALHTL..RNGSVLETAKDLKTSSKVVLSAELDKLYKMLGSPFMTNgstileaiVKPVFISALVQCT-CGKKGWSVGDWT.GFKSSCCNNLS.KRLCV..-VPGVVKPGDA-..........................VITTQKAGV...GIKY...FCGMTLKFV......ASIEGVSVW............................. A0A0U1UZ65_BCHK4/196-440 ............DCIPVDQYMCGKNGKPIADYAKIVAKEgltTLADIEVDvksrm.dldrfIVLNKKLYRVV.......WNVTRR.NVPYSKQTAFTVVSVVQCDd.kESVPEHTftIGSQILMVSP-LKATNNKNFNLKQRLLHTFYGKEAVQQ........PGYIYHSAYVDCNACGRGTWCTGNAIqGFACDCGANYSaNDVDL..QSSGLVPKNALFlancpcanngs....cshsaaqvysiLDGKACVEF..gGKSFtltFGGVVYAYM......GCCDGTMYF............................. R1A_CVH22/112-316 ............NVTYTDQYLCGADGKPVMSEDLWQFVD...HFGENEE-...........IIINGHTYVCA.......WLTKRK.PLDYKRQNNLAIEEIEYVH...GDALHTL..RNGSVLEMAKEVKTSSKVVLSDALDKLYKVFGSPVMTNgsnileafTKPVFISALVQCT-CGTKSWSVGDWT.GFKSSCCNVIS.NKLCV..-VPGNVKPGDA-..........................VITTQQAGA...GIKY...FCGMTLKFV......ANIEGVSVW............................. A0A0U1WHG0_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...LLARAGKSmctlp.eqldfIESKRGVYCCReheheiaWYTERS.DKSYEHQTPFEVKIAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKNTEGFMGRIRSVYQVATPNECND........---MHLSVFMKCNHCDEASWQTCDFL.KATCEYCGTE-.NPVSEgpTTCGYLPTNAVVkmpcpacqnkevgpehsvadyhnhssIETRLRKGG...RTKC...FGGCVFSYV......GCYNKRAYW............................. A0A0U1WHK4_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdhehevaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTE-.NSIAEgpTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRRGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. A0A0K1RLM9_9ALPC/110-310 ...........g-VIYVDQYMCGADGKPVIEG---DFKD...YFGDEDI-...........IEFEGEEYHCA.......WTTVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDIKPGDA-..........................VVTSMNAGK...GVKF...FANCVLQYA......GDVEGVSIW............................. T2B9U0_MERS/194-443 ............DVTPVDQYMCGVDGKPISAYAFLMAKDgitKLADVEADvaara.ddegfITLKNNLYRLV.......WHVERK.DVPYPKQSIFTINSVVQKDgveNTPPHYF.tLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLEN........PTYIYHSAFIECGSCGNDSWLTGNAIqGFACGCGASYTaNDVEV..QSSGMIKPNALLcatcpfakgdscssnckhsvaqlvsyLSERCNVIA..dSKSFtliFGGVAYAYF......GCEEGTMYF............................. A0A0U1WHG4_9ALPC/111-315 ............NTVYVDNYMCGSNGVPVLPEDQWEFVD...YFGELTE-...........VSIGDTTYIKA.......WNVDRV.EGPYKSQTLLSINAISYC-...GEVIHAL..ADGSTMSYATAVKKNSKTVVNKTYQKLYDNIGVPFVTNgkvlteiiPKPVFNHGLVKCH-CGKVSWTVGDWS.CYKSTCCGTVC.KPIAI..-VNGDVNPGDV-..........................VITSKQVAT..nGVKY...YNGMVLKYV......DTIEDVHLW............................. A0A0U2UMS4_9ALPC/110-310 ..........gi--IYVDQYMCGADGKPVIEG---DFKD...YFGDEDI-...........IEFEGEEYHCA.......WTTVRD.EKPLNQQTLFTIQEIQYN-...MDIPHKL..SNCAIRHVAPPVKKNSKIVLSEDYKKLYEIFGSPFMGNgdclskcfNTLHFIVATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDIKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQYA......GDVEGVSIW............................. R1AB_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. B8Q8U7_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. T2B9I2_MERS/194-443 ............DVTPVDQYMCGVDGKPISAYAFLMAKDgitKLADVEADvaara.ddegfITLKNNLYRLV.......WHVERK.DVPYPKQSIFTINSVVQKDgveNTPPHYF.tLGCKILTLTPRNKWSGVSDLSLKQKLLYTFYGKESLEN........PTYIYHSAFIECGSCGNDSWLTGNAIqGFACGCGASYTaNDVEV..QSSGMIKPNALLcatcpfakgdscssnckhsvaqlvsyLSERCNVIA..dSKSFtliFGGVAYAYF......GCEEGTMYF............................. U5LR11_9BETC/201-450 ............DVIPVDQYMCGFDGSPIKPYLDLANKEgltKLADVEADvcsrv.dkqgfLIFKGTTYRVV.......WFTERK.DVDYSKQTLFTVICVMQRNg.vHDIPAHPftLGSKVEQLKPHVAKGNLVGLTLKAKILYTMYGEDAVEE........PSYIYHSAFVDCVKCNEGKWCTGNAVaGFACECGAAYTaKQVLL..QSSGLVKSNALFcatcpfaqgdrcsldckhtvpqvvsyLSEKCVVFP..sGKSFvlaFGGALYTYM......GCAEGTMYF............................. S5YAF0_9ALPC/111-314 ............NTIYVDQYLCGADGKPVVPEEFWDFKD...YFVDDDQ-...........VVVNGTTYIKA.......WVVERA.NVAYEAQNVTAINGITYC-...AKIPHTL..PDGSVVRVARKPKIKKSIVLSDVYKPLLEGLGAPFVKNgdtlasilTEPVFLHALVKCT-CGKTMWTVGDWS.CYKSLCCGVVC.KPLCN..-VAGIVNPGSA-..........................VVTRTGLGS...GIKY...YCGMFLRHI......LDVDGVSVW............................. A0A0U1WHD1_9ALPC/113-316 ..........ep--VYVDNYMCGANGKPVLPADVWCFQD...YFGDETE-...........LVVNGVRHVKA.......WDVVRT.NLPYQFQSTGAIESIIWL-...SDVPHVL..RNGSKLSVCKAPKFSKNVKLSEPLNTLYQACGSPFVSNgtdlagavGKPVFAHSYVACK-CGSKCWSVGDWS.GYKSTCCGTFG.KVLCT..-VFGDVVPGDV-..........................LMTSAAVGS...GTRY...YNGLTIKHV......VTVQNIACW............................. A0A088DIE1_9BETC/176-416 .........dfh--RYVDNYYCTGDGKPLP-----CIVT...LLEKAGHAnkplddamdylRGLNRMGQPCRdhdhervWEVERD.NAPYPEQSLFSISAIKTL-...GEIPHCVfaPDCAVKVMKPRKVKRGADGFMTKLRRVYNINGFDEV--........-KPMALCALHYCEDCGMEMWCHSNFE.EAYCPCGKIYT.NTPCT.lTSAGYVVEGSVVampcdacksdsd.hsngtfydsckylAEDKAEPGN...RENFv.yFGGCCFAYV......GCRNGNAIW............................. Q0PL14_9ALPC/110-310 ...........g-VIYVDQYMCGADGKPVIEG---DFKD...YFGDEDI-...........IEFEGEEYHCA.......WTTVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDIKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQYA......GDVEGVSIW............................. U5KNA9_9BETC/201-450 ............DVIPVDQYMCGFDGSPIKPYLDLANKEgltKLADVEADvcsrv.dkqgfLIFKGTTYRVV.......WFTERK.DVDYSKQTLFTVICVMQRNg.vHDIPAHPftLGSKVEQLKPHVAKGNLVGLTLKAKILYTMYGEDAVEE........PSYIYHSAFVDCVKCNEGKWCTGNAVaGFACECGAAYTaKQVLL..QSSGLVKSNALFcatcpfaqgdrcsldckhtvpqvvsyLSEKCVVFP..sGKSFvlaFGGALYTYM......GCAEGTMYF............................. K4K1U5_9ALPC/111-315 ...........t-TVFVDNFLCGANGLPACSEQEWEFKD...HFGELDE-...........VTINGTTFVKA.......WNVDRT.PGPYSTQNLLSINSISWC-...GEIPHSL..ADGSIRRVAKVVKKSKSVLLGKQFQQLYDSVGSPFVTNgknlsdvlVKPIYCHALVKCQ-CGKTSWTVGDWS.CYKSMCCGFNC.KPLAI..-VNGEVVPGDV-..........................LVTSDKVSA..sGTKY...YNGMVLKFV......DKIDNACLW............................. A0A059VJE6_9ALPC/111-316 ...........n-IVPVDQYMCGADGKPVLQESEWEYTD...FFADSEDG..........qLNIAGITYVKA.......WIVERS.DVSYASQNLTSIKSITYC-...STYEHTF..PDGTAMKVARTPKIKKTVVLSEPLATIYREIGSPFVDNgsdarsiiKRPVFLHAFVKCK-CGSYHWTVGDWT.SYVSTCCGFKC.KPVLV..-ASCSATPGSV-..........................VVTRAGAGT...GVKY...YNNMFLRHV......ADIDGLAFW............................. R9QTB2_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLE-----CIKD...LLARAGKSmctls.eqldyIESKRGVYCCReheheivWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVATPQECND........---MHLSTLMKCNHCDEVSWQTCDFI.KATCEQCGTE-.NPVCEgpTTCGYLPTNAVVkmpcpacqdpevgpehsvadyhnhsnIETRLRKGG...RTKC...FGGCVFSYV......GCYNKRAYW............................. F2YDB2_SARS/182-423 ...........v-TRYVDNNFCGPDGYPLD-----CIKD...FLARAGKSmctls.eqldyIESKRGVYCCRdheheiaWFTERS.DKSYEHQTPFEIKSAKKFDtfkGECPKFVfpLNSKVKVIQPRVEKKKTEGFMGRIRSVYPVASPQECNN........---MHLSTLMKCNHCDEVSWQTCDFL.KATCEHCGTEN.LVIEG.pTTCGYLPTNAVVkmpcpacqdpeigpehsvadyhnhsnIETRLRKGG...RTRC...FGGCVFAYV......GCYNKRAYW............................. R1AB_CVPPU/110-310 ..........ga--IYVDQYMCGADGKPVIEG---DFKD...YFGDEDI-...........IEFEGEEYHCA.......WTTVRD.EKPLNQQTLFTIQEIQYN-...LDIPHKL..PNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNgdclskcfDTLHFIAATLRCP-CGSESSGVGDWT.GFKTACCGLSG.KVKGV..-TLGDIKPGDA-..........................VVTSMSAGK...GVKF...FANCVLQYA......GDVEGVSIW............................. R1A_BCHK4/196-440 ............DCIPIDQYMCGKNGKPIADYAKIVAKEgltTLADIEVDvksrm.dsdrfIVLNKKLYRVV.......WNVTRR.NVPYPKQTAFTIVSVVQCDd.kDSVPEHTftIGSQILMVSP-LKATNNKNFNLKQRLLYTFYGKDAVQQ........PGYIYHSAYVDCNACGRGTWCTGNAIqGFACDCGANYSaNDVDL..QSSGLVPRNALFlancpcannga....cshsaaqvyniLDGKACVEV..gGKSFtltFGGVVYAYM......GCCDGTMYF............................. A0A240FW17_9ALPC/111-292 ...........k-VVYVDNYLCGNNGKPVVPKDKWKILS...K---GQQG...........LLADNVYYKVV.......WDVKRD.DVPYEKQNMSSIVSIRYL-...IDIPHFL..ADGAVREKKRPPQDYTTML----------VKGFPFLMA........YDWKFVNHAVKCGKCDNHVVEAGAFE.SVITSCCRDEI.VHQGV..---VTAKAGEL-..........................V--------...----...---------......---------ltplsnkklilvgstvlrnigtahnlsiw R1A_BCHK9/191-395 ...........l-VEPVMKLLGVIKSDFTLEQLLAALGK...YRTEDG--...........YDLPDGYVKVA.......IKVGRK.AVPVLKQSIFTVVGVTEQLvpgYYYPFS-..TSSVVEHTKPTRGGPVGKTVEAVMLSLYGTNN------........YNPATPVARLKCSYCDYYGWTPLKDIgTVNCLCGAEFQlTSSCVdaESAGVIKPGCVM..........................LLDKSPGMRlipGNRTyvsFGGAIWSPI......GKVNGVTVW............................. A0A0U1WHG1_9ALPC/109-313 ..........ae--VYVDNYMCDQTGKPVLAADVWTFKD...YFGESDT-...........IVIDGVVYRKA.......WEVVRL.DVPYKAQSVSAISSIEWL-...CGVQHVL..PSGTVLDVAKSVSKSKVVLLSDPYADIYDQVGSPFMTNgknlleivVKPCFLHGYVKCN-CGNTHWAVGDWRaGYKSVCCGLNC.NPICV..-AAGYVEPGDV-..........................LFTSKGAGT...GLKY...YKGLTLKFV......GEVENVAVW............................. #=GC seq_cons ...........s.shaVDpahCGsDGcPlh.....shpD...ahu-ssp............IphpsthYpps.......WhspRs.-hsYppQohhsIpulphh....s-hP+hl..hsuslptlsPtlcpppshslstch+pLYshhGsshhsN.........p.hahsuhlcCs.CGptoWssGDah.uapssCCGs.s.pslsl...osGhl.sssl...........................lhTphpsGs...Gs+a...FuGslhpal......GshsssuhW............................. //