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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: D4A1W1_RAT (D4A1W1)

Summary

This is the summary of UniProt entry D4A1W1_RAT (D4A1W1).

Description: Holliday junction recognition protein {ECO:0000313|Ensembl:ENSRNOP00000040906}
Source organism: Rattus norvegicus (Rat) (NCBI taxonomy ID 10116)
Length: 672 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
disorder n/a 1 18
Pfam Scm3 11 68
disorder n/a 41 46
disorder n/a 59 63
disorder n/a 69 123
low_complexity n/a 84 93
disorder n/a 159 165
disorder n/a 174 184
disorder n/a 188 193
disorder n/a 197 199
Pfam HJURP_mid 254 373
disorder n/a 276 283
disorder n/a 287 300
disorder n/a 305 346
Pfam HJURP_C 392 453
disorder n/a 405 406
disorder n/a 430 487
disorder n/a 495 541
Pfam HJURP_C 533 589
disorder n/a 543 544
disorder n/a 547 548
disorder n/a 586 637
disorder n/a 641 644
disorder n/a 654 672

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession D4A1W1. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MESMNLRDRP LDQRLKESSR RFQTYMQRLI AKYNQPFEDD PLVQMATLTY
50
51
ETPQGLRVWG GKLIKEEDEE HTQVIGGLSE QAPGGDSDSS GADTSLEEAE
100
101
WPSCNLTREA SGDTGKHQLT VPGNTLKTDL RRKYLTQVDI LLQDAEYFKN
150
151
TQKGDGKDTV TTCFPSWTSP VTPAPGCQDG IPAKSFGGPE GSASSCGDQA
200
201
SSYPCPADMT IVTRNDSFSL LGASSNSVSN QCPEVDDISN VTISDLYEGM
250
251
MHSMSRLLRS KPSCIISTKT SINRNWKLKR RLSRKHGVHK NTTYCHRSKP
300
301
FQRSSRKGPL HCSEPRKEAR VLRDSKNLPH VDPHKTDKTG LELESVPLEG
350
351
SKLQVHKLSP AWKELQGLPQ KYLGLSTVNH LGREDRVKAL QWLISPVKMA
400
401
PRLRVPPGQV ENWYREVKIK FEKLHQECCP SPEKRLRLTG PTQSWAADMY
450
451
RGGSKSPGSR QSVETHKLSS PLSREKTERP GEAFEDLRGR SVKTNSCLLR
500
501
RGPSPEDSPS QSPGHSQQRS GHLQEHNSEP IRKAAWPSTA ISAPDFPDCG
550
551
GHYDELKKEF NRLYQKYCLV SPRHAKVTLC GRLSPVKAAA AVPGQTEHLK
600
601
RLNPDSPLQS SQKWSPSPDW RIRIPQDSTA VEGHRSAQTA SAVVRGPWLS
650
651
TKRRKLSYPA KSPDSSGAAG RL                              
672
 

Show the unformatted sequence.

Checksums:
CRC64:6DFF2E8F9ADFCC95
MD5:2eb37424b229b0a3dd228d3ad57f0423

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;