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0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: F1QSJ2_DANRE (F1QSJ2)

Summary

This is the summary of UniProt entry F1QSJ2_DANRE (F1QSJ2).

Description: Collagen, type XI, alpha 1a {ECO:0000313|Ensembl:ENSDARP00000002692}
Source organism: Danio rerio (Zebrafish) (Brachydanio rerio) (NCBI taxonomy ID 7955)
Length: 1813 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
sig_p n/a 1 40
disorder n/a 62 65
disorder n/a 247 271
low_complexity n/a 268 279
disorder n/a 274 275
disorder n/a 278 361
disorder n/a 363 364
disorder n/a 379 1582
Pfam Collagen 448 501
low_complexity n/a 450 498
low_complexity n/a 492 504
Pfam Collagen 535 598
low_complexity n/a 546 564
low_complexity n/a 567 589
low_complexity n/a 582 600
low_complexity n/a 624 651
low_complexity n/a 657 675
low_complexity n/a 690 726
low_complexity n/a 729 744
low_complexity n/a 738 753
low_complexity n/a 753 771
low_complexity n/a 773 798
low_complexity n/a 884 915
low_complexity n/a 915 957
low_complexity n/a 962 993
low_complexity n/a 987 1021
low_complexity n/a 1053 1071
low_complexity n/a 1080 1105
low_complexity n/a 1112 1143
low_complexity n/a 1155 1182
low_complexity n/a 1193 1221
low_complexity n/a 1221 1260
low_complexity n/a 1266 1318
low_complexity n/a 1314 1332
low_complexity n/a 1335 1350
low_complexity n/a 1344 1378
low_complexity n/a 1377 1399
low_complexity n/a 1428 1458
Pfam Collagen 1443 1507
low_complexity n/a 1463 1473
Pfam Collagen 1494 1553
low_complexity n/a 1497 1530
low_complexity n/a 1539 1548
Pfam COLFI 1582 1811
disorder n/a 1584 1585
disorder n/a 1587 1592
disorder n/a 1597 1618

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession F1QSJ2. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MERPRWSPMW KTKRWLLDST VFKLITVSLV LVLQAPHVRA EPVDVLKVLE
50
51
FPTVPEGVEK TSGFCTNRRA SQPDAAYKIS KNAQLSAPTK QLFPDGVFPE
100
101
DFSILTTIKP KAGIQSFLLS IYNEKGVQQL GVEVGRSPVF LYEDQEGKPA
150
151
PEDYPLFRAL NLADGKWHRV GISVEKKTVT IVVDCKKKLT KPLGRSDHAS
200
201
IDTKGITVFG TRILDEESFE GDIQQLLIVA DPKAAYDYCE HYSPDCDVPH
250
251
KDTLQAQEPG EEYTTPVEYG DLYDYYEGGT PTATDEFSEP QSNNVDGEYY
300
301
TDSELDYGTV DASKTPVATT GPNKAMEEEN FGDYITETAQ AGLDPTAASE
350
351
AVLPSGTADP IGVDSYDFKE YDLKEYDVTG LDKNQYEYGP YDEFGNVAPN
400
401
PTSNYEDTFG PGVAAETDIA ETDLGGGAAL GQKGEKGEPA VIEPGMLIEG
450
451
PSGPPGPAGL PGPPGLQGPP GLAGDPGDRG PPGRAGLPGA DGLPGPPGTM
500
501
LMLPFRFGGD GEKGPVVSAQ EAQAQAILSQ ARLAMRGPPG PMGLTGRSGP
550
551
VGLPGPPGLK GESGDHGPQG PRGIQGPPGQ IGKPGKRGRA GADGARGMPG
600
601
ESGSKGDRGF DGLPGLPGEK GHRGETGPAG PPGPTGEDGP RGEDGEIGPR
650
651
GLAGESGPRG LLGPRGPPGP PGQPGIAGVD GPQGPKGNMG PQGEPGPPGQ
700
701
QGIPGGQGLP GPQGPIGPPG EKGPQGRSGL PGLPGADGPP GHPGKEGPPG
750
751
EKGALGQPGP QGPIGYPGPR GVKGADGVRG LKGGKGEKGE DGFPGFKGDM
800
801
GLKGDRGELG LAGPRGEDGP EGPKGRAGPN GESGPQGSAG EKGKLGVPGL
850
851
PGYPGRQGPK GSTGFPGFPG ANGEKGGRGV AGKAGPRGQR GPTGPRGARG
900
901
ARGPTGKPGP KGTAGNDGPP GPPGERGPQG PQGPVGFPGP KGPPGPPGKD
950
951
GLPGHPGQRG ETGFQGKTGP PGPGGVVGPQ GPTGETGPIG ERGHPGPPGP
1000
1001
PGEQGLPGAG GKEGAKGDPG PQGSPGKDGP PGLRGFPGER GLPGVTGPPG
1050
1051
LKGAEGPQGP PGPVGSPGER GAAGSAGPIG LPGRTGPQGP PGPAGEKGAP
1100
1101
GERGPLGPAG RDGVQGPVGL PGPAGPQGPP GEDGDKGEVG EPGQKGSKAD
1150
1151
KGEQGPPGPP GLQGPIGAPG PAGADGEPGP RGQQGMFGQK GDEGSRGFPG
1200
1201
PPGPIGLQGL PGPPGEKGEN GDVGPMGPPG PPGPRGPQGP PGADGPQGPP
1250
1251
GGIGGMGAVG EKGEQGEAGN PGPPGEPGPG GPKGERGEKG EAGPPGAAGP
1300
1301
AGPKGPPGDD GPKGNPGPVG FPGDPGPPGE PGVAGIDGGP GEKGEDGESG
1350
1351
QPGPPGPSGE AGPPGPPGKR GPPGAHGAEG RQGEKGAKGE AGLEGPPGKT
1400
1401
GPVGPQGPSG KPGPEGLRGI PGPVGEQGLP GAPGQDGPPG PMGPPGLPGL
1450
1451
KGDPGSKGEK GHPGLIGLIG PPGEQGEKGD RGLPGPQGAA GSKGDNGISG
1500
1501
ASGPIGPPGP PGLPGPQGPK GSKGSTGPAG QKGDTGTVGP PGPPGPPGEV
1550
1551
IQPLPIHSPK KSRRSIDMQA DEAGTMLDYG EGMEDIFSSL NNLKQDIERM
1600
1601
KYPMGTQNNP ARSCKDLQLA HPEFPDGEYY IDPNQGCSGD SFKVYCNFTA
1650
1651
GGETCIFPDK KSNGVRISSW PKEVPGSWFS EFKRGKILSY VDAEGNSINM
1700
1701
VQMTFLKLLT ASARQNLTYS CHQSVAWHDA TTDSYDRALH FLGSNDEEIS
1750
1751
YDNNPYIKAL SDGCAVRKGY GKTVLEINTP KIDQVPIVDV KFTDFGDPNQ
1800
1801
KFGFEVGPVC FLG                                        
1813
 

Show the unformatted sequence.

Checksums:
CRC64:A165A4276614F2CF
MD5:e4f8cd4119d0135649e0f730f1e3e413

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;