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6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: DDLB_ECOLI (P07862)

Summary

This is the summary of UniProt entry DDLB_ECOLI (P07862).

Description: D-alanine--D-alanine ligase B EC=6.3.2.4
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
Length: 306 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

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Source Domain Start End
Pfam Dala_Dala_lig_N 4 86
Pfam Dala_Dala_lig_C 103 303

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P07862. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTDKIAVLLG GTSAEREVSL NSGAAVLAGL REGGIDAYPV DPKEVDVTQL
50
51
KSMGFQKVFI ALHGRGGEDG TLQGMLELMG LPYTGSGVMA SALSMDKLRS
100
101
KLLWQGAGLP VAPWVALTRA EFEKGLSDKQ LAEISALGLP VIVKPSREGS
150
151
SVGMSKVVAE NALQDALRLA FQHDEEVLIE KWLSGPEFTV AILGEEILPS
200
201
IRIQPSGTFY DYEAKYLSDE TQYFCPAGLE ASQEANLQAL VLKAWTTLGC
250
251
KGWGRIDVML DSDGQFYLLE ANTSPGMTSH SLVPMAARQA GMSFSQLVVR
300
301
ILELAD                                                
306
 

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Checksums:
CRC64:F2D401C323A04471
MD5:54e611311e0e2a239edc3e7c5749607a

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Dala_Dala_lig_C 103 - 303 1IOV A 103 - 303 Show 3D Structure View in InterPro
1IOW A 103 - 303 Show 3D Structure View in InterPro
2DLN A 103 - 303 Show 3D Structure View in InterPro
4C5A A 103 - 303 Show 3D Structure View in InterPro
B 103 - 303 Show 3D Structure View in InterPro
4C5B A 103 - 303 Show 3D Structure View in InterPro
B 103 - 303 Show 3D Structure View in InterPro
4C5C A 103 - 303 Show 3D Structure View in InterPro
B 103 - 303 Show 3D Structure View in InterPro
Dala_Dala_lig_N 4 - 86 1IOV A 4 - 86 Show 3D Structure View in InterPro
1IOW A 4 - 86 Show 3D Structure View in InterPro
2DLN A 4 - 86 Show 3D Structure View in InterPro
4C5A A 4 - 86 Show 3D Structure View in InterPro
B 4 - 86 Show 3D Structure View in InterPro
4C5B A 4 - 86 Show 3D Structure View in InterPro
B 4 - 86 Show 3D Structure View in InterPro
4C5C A 4 - 86 Show 3D Structure View in InterPro
B 4 - 86 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;